>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion,
             complete genome
          Length = 491515

 Score =  111 bits (56), Expect = 1e-21
 Identities = 93/103 (90%), Gaps = 3/103 (2%)
 Strand = Plus / Plus

                                                                         
Query: 72    ggcaaggaaatcgttccaattctatagatataagaaaaataaagaacgaggaaggcgtaa 131
             ||||||||||||||||||||||||||  ||| | ||||| |||||| |||||| ||||||
Sbjct: 84573 ggcaaggaaatcgttccaattctata--tatgaaaaaaa-aaagaaagaggaaagcgtaa 84629

                                                        
Query: 132   accgatctagttatcttagctctttcagggaatcttctctaga 174
             | | || ||||||||||||||||||||||||||||||||||||
Sbjct: 84630 atcaatttagttatcttagctctttcagggaatcttctctaga 84672

>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion,
             complete genome
          Length = 490673

 Score =  111 bits (56), Expect = 1e-21
 Identities = 93/103 (90%), Gaps = 3/103 (2%)
 Strand = Plus / Plus

                                                                         
Query: 72    ggcaaggaaatcgttccaattctatagatataagaaaaataaagaacgaggaaggcgtaa 131
             ||||||||||||||||||||||||||  ||| | ||||| |||||| |||||| ||||||
Sbjct: 84093 ggcaaggaaatcgttccaattctata--tatgaaaaaaa-aaagaaagaggaaagcgtaa 84149

                                                        
Query: 132   accgatctagttatcttagctctttcagggaatcttctctaga 174
             | | || ||||||||||||||||||||||||||||||||||||
Sbjct: 84150 atcaatttagttatcttagctctttcagggaatcttctctaga 84192

>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare
             mitochondrion, complete genome
          Length = 490669

 Score =  111 bits (56), Expect = 1e-21
 Identities = 93/103 (90%), Gaps = 3/103 (2%)
 Strand = Plus / Plus

                                                                         
Query: 72    ggcaaggaaatcgttccaattctatagatataagaaaaataaagaacgaggaaggcgtaa 131
             ||||||||||||||||||||||||||  ||| | ||||| |||||| |||||| ||||||
Sbjct: 84093 ggcaaggaaatcgttccaattctata--tatgaaaaaaa-aaagaaagaggaaagcgtaa 84149

                                                        
Query: 132   accgatctagttatcttagctctttcagggaatcttctctaga 174
             | | || ||||||||||||||||||||||||||||||||||||
Sbjct: 84150 atcaatttagttatcttagctctttcagggaatcttctctaga 84192

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  111 bits (56), Expect = 1e-21
 Identities = 93/103 (90%), Gaps = 3/103 (2%)
 Strand = Plus / Minus

                                                                            
Query: 72       ggcaaggaaatcgttccaattctatagatataagaaaaataaagaacgaggaaggcgtaa 131
                ||||||||||||||||||||||||||  ||| | ||||| |||||| |||||| ||||||
Sbjct: 20550880 ggcaaggaaatcgttccaattctata--tatgaaaaaaa-aaagaaagaggaaagcgtaa 20550824

                                                           
Query: 132      accgatctagttatcttagctctttcagggaatcttctctaga 174
                | | || ||||||||||||||||||||||||||||||||||||
Sbjct: 20550823 atcaatttagttatcttagctctttcagggaatcttctctaga 20550781

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  111 bits (56), Expect = 1e-21
 Identities = 93/103 (90%), Gaps = 3/103 (2%)
 Strand = Plus / Minus

                                                                            
Query: 72       ggcaaggaaatcgttccaattctatagatataagaaaaataaagaacgaggaaggcgtaa 131
                ||||||||||||||||||||||||||  ||| | ||||| |||||| |||||| ||||||
Sbjct: 20477094 ggcaaggaaatcgttccaattctata--tatgaaaaaaa-aaagaaagaggaaagcgtaa 20477038

                                                           
Query: 132      accgatctagttatcttagctctttcagggaatcttctctaga 174
                | | || ||||||||||||||||||||||||||||||||||||
Sbjct: 20477037 atcaatttagttatcttagctctttcagggaatcttctctaga 20476995

>emb|AL731738.6|CNS08C7N Oryza sativa chromosome 12, . BAC OSJNBa0005K20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 143618

 Score =  111 bits (56), Expect = 1e-21
 Identities = 93/103 (90%), Gaps = 3/103 (2%)
 Strand = Plus / Plus

                                                                         
Query: 72    ggcaaggaaatcgttccaattctatagatataagaaaaataaagaacgaggaaggcgtaa 131
             ||||||||||||||||||||||||||  ||| | ||||| |||||| |||||| ||||||
Sbjct: 42353 ggcaaggaaatcgttccaattctata--tatgaaaaaaa-aaagaaagaggaaagcgtaa 42409

                                                        
Query: 132   accgatctagttatcttagctctttcagggaatcttctctaga 174
             | | || ||||||||||||||||||||||||||||||||||||
Sbjct: 42410 atcaatttagttatcttagctctttcagggaatcttctctaga 42452

>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete
             genome
          Length = 490520

 Score =  111 bits (56), Expect = 1e-21
 Identities = 93/103 (90%), Gaps = 3/103 (2%)
 Strand = Plus / Plus

                                                                         
Query: 72    ggcaaggaaatcgttccaattctatagatataagaaaaataaagaacgaggaaggcgtaa 131
             ||||||||||||||||||||||||||  ||| | ||||| |||||| |||||| ||||||
Sbjct: 84040 ggcaaggaaatcgttccaattctata--tatgaaaaaaa-aaagaaagaggaaagcgtaa 84096

                                                        
Query: 132   accgatctagttatcttagctctttcagggaatcttctctaga 174
             | | || ||||||||||||||||||||||||||||||||||||
Sbjct: 84097 atcaatttagttatcttagctctttcagggaatcttctctaga 84139

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                                    
Query: 139      tagttatcttagctctttcagggaatcttctctaga 174
                ||||||||||||||||||||||||||||||||||||
Sbjct: 16615641 tagttatcttagctctttcagggaatcttctctaga 16615676

>dbj|AP005180.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0003B09
          Length = 161813

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                                  
Query: 139    tagttatcttagctctttcagggaatcttctctaga 174
              ||||||||||||||||||||||||||||||||||||
Sbjct: 106261 tagttatcttagctctttcagggaatcttctctaga 106296

>dbj|AK073933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076F17, full
            insert sequence
          Length = 2599

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                                
Query: 139  tagttatcttagctctttcagggaatcttctctaga 174
            ||||||||||||||||||||||||||||||||||||
Sbjct: 2118 tagttatcttagctctttcagggaatcttctctaga 2153

>gb|AE000512.1| Thermotoga maritima MSB8, complete genome
          Length = 1860725

 Score = 46.1 bits (23), Expect = 0.068
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 94     tatagatataagaaaaataaaga 116
              |||||||||||||||||||||||
Sbjct: 306123 tatagatataagaaaaataaaga 306145

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 22       atattcagagtagcttcatgactaccttcaaaga 55
                |||||||||||||||| || ||||||| ||||||
Sbjct: 14500309 atattcagagtagctttatcactacctccaaaga 14500276

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 22       atattcagagtagcttcatgactaccttcaaaga 55
                |||||||||||||||| || ||||||| ||||||
Sbjct: 14495284 atattcagagtagctttatcactacctccaaaga 14495251

>gb|AC087220.9| Oryza sativa chromosome 3 BAC OSJNBb0097F01 genomic sequence, complete
             sequence
          Length = 135594

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 22    atattcagagtagcttcatgactaccttcaaaga 55
             |||||||||||||||| || ||||||| ||||||
Sbjct: 41072 atattcagagtagctttatcactacctccaaaga 41105

>gb|AC064846.5| Homo sapiens BAC clone RP11-59C11 from 2, complete sequence
          Length = 169988

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 105   gaaaaataaagaacgaggaag 125
             |||||||||||||||||||||
Sbjct: 70542 gaaaaataaagaacgaggaag 70522

>emb|BX248394.5| Zebrafish DNA sequence from clone CH211-205P19 in linkage group 12,
             complete sequence
          Length = 143099

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 94    tatagatataagaaaaataaa 114
             |||||||||||||||||||||
Sbjct: 88639 tatagatataagaaaaataaa 88659

>gb|AY591722.1| Mus musculus clone IgKVk4-63 immunoglobulin kappa-like gene, partial
            sequence
          Length = 2801

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 95   atagatataagaaaaataaa 114
            ||||||||||||||||||||
Sbjct: 2381 atagatataagaaaaataaa 2362

>gb|AC156953.9| Mus musculus 6 BAC RP24-568F14 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 173297

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    atagatataagaaaaataaa 114
             ||||||||||||||||||||
Sbjct: 22056 atagatataagaaaaataaa 22075

>emb|AL683873.14| Mouse DNA sequence from clone RP23-119G22 on chromosome 13 Contains
             part of a novel gene, complete sequence
          Length = 104602

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 257   gtccagagaaaagcagtggc 276
             ||||||||||||||||||||
Sbjct: 84324 gtccagagaaaagcagtggc 84343

>gb|AF385633.1|AF385633 Craterellus tubaeformis internal transcribed spacer 1, 5.8S
           ribosomal RNA gene, internal transcribed spacer 2,
           complete sequence
          Length = 634

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 103 aagaaaaataaagaacgagg 122
           ||||||||||||||||||||
Sbjct: 78  aagaaaaataaagaacgagg 59

>gb|AY195573.1| Craterellus tubaeformis internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene, complete sequence;
           and internal transcribed spacer 2, partial sequence
          Length = 468

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 103 aagaaaaataaagaacgagg 122
           ||||||||||||||||||||
Sbjct: 110 aagaaaaataaagaacgagg 91

>gb|AY195572.1| Craterellus tubaeformis internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene, complete sequence;
           and internal transcribed spacer 2, partial sequence
          Length = 603

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 103 aagaaaaataaagaacgagg 122
           ||||||||||||||||||||
Sbjct: 57  aagaaaaataaagaacgagg 38

>gb|U70560.1|EHU70560 Entamoeba histolytica actin binding protein EhABP (abp1) gene,
           complete cds
          Length = 3060

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  atagatataagaaaaataaa 114
           ||||||||||||||||||||
Sbjct: 107 atagatataagaaaaataaa 126


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,186,851
Number of Sequences: 3902068
Number of extensions: 3186851
Number of successful extensions: 65694
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65556
Number of HSP's gapped (non-prelim): 131
length of query: 317
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 295
effective length of database: 17,147,199,772
effective search space: 5058423932740
effective search space used: 5058423932740
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)