>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase (
          Length = 7059

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 308  EAACSRNQDFFRVEQDC*LDLTRLMECRGIVCYHV 204
            EA CS++  F+R+  +C   L+ ++ C G  CY+V
Sbjct: 5008 EACCSQSDRFYRLANECAQVLSEIVMCGG--CYYV 5040

>R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase
          Length = 7094

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 308  EAACSRNQDFFRVEQDC*LDLTRLMECRGIVCYHV 204
            EA CS++  F+R+  +C   L+ ++ C G  CY+V
Sbjct: 5008 EACCSQSDRFYRLANECAQVLSEIVMCGG--CYYV 5040

>R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase
          Length = 7094

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 308  EAACSRNQDFFRVEQDC*LDLTRLMECRGIVCYHV 204
            EA CS++  F+R+  +C   L+ ++ C G  CY+V
Sbjct: 5008 EACCSQSDRFYRLANECAQVLSEIVMCGG--CYYV 5040

>ALK_HUMAN (Q9UM73) ALK tyrosine kinase receptor precursor (EC 2.7.10.1)|
           (Anaplastic lymphoma kinase) (CD246 antigen)
          Length = 1620

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 220 MPRHSIKRVRSSQQSCSTLKKSWLRLQAASCQMPHSIHR 336
           MPR S   + +S  S  T+   W+R  +  C +  S+HR
Sbjct: 315 MPRGSFLLLNTSADSKHTILSPWMRSSSEHCTLAVSVHR 353

>ALK_MOUSE (P97793) ALK tyrosine kinase receptor precursor (EC 2.7.10.1)|
           (Anaplastic lymphoma kinase) (CD246 antigen)
          Length = 1621

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 220 MPRHSIKRVRSSQQSCSTLKKSWLRLQAASCQMPHSIHR 336
           MPR S   + +S  S  T+   W+R  +  C +  S+HR
Sbjct: 319 MPRGSFLLLNTSADSKHTILSPWMRSSSDHCTLAVSVHR 357

>PPK_NEIMB (Q9JXS9) Polyphosphate kinase (EC 2.7.4.1) (Polyphosphoric acid|
           kinase) (ATP-polyphosphate phosphotransferase)
          Length = 685

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 258 LTGSDSFDGMSGHRVLSCVIVLPHQKPCPKTLVPGVFGF 142
           L G+D+F   SG  ++    +LP   P P  L  G  GF
Sbjct: 163 LDGTDAFGRPSGMAIVQAPRILPRVVPLPSELCGGGHGF 201

>PPK_NEIMA (Q9JW42) Polyphosphate kinase (EC 2.7.4.1) (Polyphosphoric acid|
           kinase) (ATP-polyphosphate phosphotransferase)
          Length = 685

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 258 LTGSDSFDGMSGHRVLSCVIVLPHQKPCPKTLVPGVFGF 142
           L G+D+F   SG  ++    +LP   P P  L  G  GF
Sbjct: 163 LDGTDAFGRPSGMAIVQAPRILPRVVPLPSELCGGGHGF 201

>UNC5_DROME (Q95TU8) Netrin receptor unc-5 precursor (Unc5 netrin receptor)|
          Length = 1072

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 155 PGTNVFGQGF*CGSTMTHDSTRCPDIPSNESDPVSNLAL 271
           PG ++ G G  CG    H     P++ +N ++P+ +L++
Sbjct: 584 PGEHIMGMGIGCGGVTEHHYD-VPNLSANYTNPIDHLSV 621


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,820,401
Number of Sequences: 219361
Number of extensions: 1472853
Number of successful extensions: 3064
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3063
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)