ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast56d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NPT2B_HUMAN (O95436) Sodium-dependent phosphate transport protei... 29 2.3
2NPT2B_PONPY (Q5REV9) Sodium-dependent phosphate transport protei... 29 2.3
3NPT2B_BOVIN (Q27960) Sodium-dependent phosphate transport protei... 29 3.0
4CE290_BOVIN (Q9TU23) Centrosomal protein Cep290 28 5.2
5VE5_HPV70 (P50774) Probable protein E5 28 5.2
6HSP1_NATST (Q8WNZ3) Sperm protamine P1 28 5.2
7HSP1_NATMI (Q8WNZ4) Sperm protamine P1 28 5.2
8RPGR_MOUSE (Q9R0X5) X-linked retinitis pigmentosa GTPase regulat... 28 6.8
9HSP1_MURCY (Q8WNY7) Sperm protamine P1 28 6.8
10K1219_MOUSE (Q8BQZ4) Protein KIAA1219 28 6.8
11SYFB_DESPS (Q6ANC2) Phenylalanyl-tRNA synthetase beta chain (EC ... 27 8.8
12E316_ADE03 (P11320) Early E3 16 kDa glycoprotein 27 8.8
13CR015_HUMAN (Q96N68) Protein C18orf15 27 8.8

>NPT2B_HUMAN (O95436) Sodium-dependent phosphate transport protein 2B|
           (Sodium/phosphate cotransporter 2B) (Na(+)/Pi
           cotransporter 2B) (Sodium-phosphate transport protein
           2B) (Na(+)-dependent phosphate cotransporter 2B)
           (NaPi-2b) (Solute carrier family 34
          Length = 690

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 137 CSCKLVCVDVCLWCACSKDLLVSVRLCCLCTR 42
           C C++ C   CL C C K        CC C++
Sbjct: 620 CCCRVCCRACCLLCGCPK--------CCRCSK 643



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>NPT2B_PONPY (Q5REV9) Sodium-dependent phosphate transport protein 2B|
           (Sodium/phosphate cotransporter 2B) (Na(+)/Pi
           cotransporter 2B) (Sodium-phosphate transport protein
           2B) (Na(+)-dependent phosphate cotransporter 2B)
           (NaPi-2b) (Solute carrier family 34
          Length = 689

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 137 CSCKLVCVDVCLWCACSKDLLVSVRLCCLCTR 42
           C C++ C   CL C C K        CC C++
Sbjct: 619 CCCRVCCRACCLLCGCPK--------CCRCSK 642



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>NPT2B_BOVIN (Q27960) Sodium-dependent phosphate transport protein 2B|
           (Sodium/phosphate cotransporter 2B) (Na(+)/Pi
           cotransporter 2B) (Sodium-phosphate transport protein
           2B) (Na(+)-dependent phosphate cotransporter 2B)
           (NaPi-2b) (Solute carrier family 34
          Length = 693

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 137 CSCKLVCVDVCLWCACSKDLLVSVRLCCLCTR 42
           C C++ C   C  C CSK        CC CT+
Sbjct: 619 CCCRVCCRLCCGLCGCSK--------CCRCTK 642



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>CE290_BOVIN (Q9TU23) Centrosomal protein Cep290|
          Length = 1453

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 110 HQHILACKNTGLAAFARTHSISRLTRYVQAYTLR 211
           HQH+++ + +  AA  +  S++   + V+A+TLR
Sbjct: 283 HQHVVSLQASEAAALGKVESVASKLQKVEAHTLR 316



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>VE5_HPV70 (P50774) Probable protein E5|
          Length = 78

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 125 LVCVDVCLWCACSKDLLVSVRLCCLCTRVVFM 30
           LV   VCL+  CS  LL SV LC     ++F+
Sbjct: 14  LVWFAVCLYICCSVPLLPSVHLCAYMWLLLFV 45



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>HSP1_NATST (Q8WNZ3) Sperm protamine P1|
          Length = 49

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -3

Query: 271 TRSRSPCTAPRRRCTTEPSMTKRIRLHVPS*SAYTVCSCKR 149
           ++SRS C   RRRC T      R R        YTV  C+R
Sbjct: 8   SQSRSRCRPRRRRCRTRRRRCCRRRRRRVCCRRYTVVRCRR 48



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>HSP1_NATMI (Q8WNZ4) Sperm protamine P1|
          Length = 49

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -3

Query: 271 TRSRSPCTAPRRRCTTEPSMTKRIRLHVPS*SAYTVCSCKR 149
           ++SRS C   RRRC T      R R        YTV  C+R
Sbjct: 8   SQSRSRCRRRRRRCRTRRRRCCRRRRRRVCCRRYTVVRCRR 48



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>RPGR_MOUSE (Q9R0X5) X-linked retinitis pigmentosa GTPase regulator (mRpgr)|
          Length = 1001

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 161 THSISRLTRYVQAYTLRHARLSGAPPPRRG 250
           T ++ R TR+   + L+H  LSG P  + G
Sbjct: 745 TENVFRATRFFPKFDLKHDHLSGIPEEQEG 774



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>HSP1_MURCY (Q8WNY7) Sperm protamine P1|
          Length = 47

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = -3

Query: 268 RSRSPCTAPRRRCTTEPSMTKRIRLHVPS*SAYTVCSCKR 149
           RSRS C   RRRC        R R        YTV  C+R
Sbjct: 7   RSRSRCRRRRRRCHRRRRRCSRRRRRRVCCRRYTVIRCRR 46



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>K1219_MOUSE (Q8BQZ4) Protein KIAA1219|
          Length = 1484

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 28  SINTTRVHRQHSRTLTSRSFEQAHHKHTSTHTSLQEHRAS 147
           ++NTT  H +  R +T           T+ HTS  +H+AS
Sbjct: 375 AVNTTPPHNRRHRAVTVNKATMKTSTVTTAHTSKVQHQAS 414



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>SYFB_DESPS (Q6ANC2) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 816

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 1   GEQIRLSFYSINTTRVHRQHSRTLTSRSFEQAHHKHTSTHT 123
           G +I+  + S+  +  +R  ++TLT ++ E++H K  S  T
Sbjct: 766 GGKIQKGYKSVAVSITYRSQTKTLTEKNVEKSHSKIVSLLT 806



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>E316_ADE03 (P11320) Early E3 16 kDa glycoprotein|
          Length = 146

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -3

Query: 142 PCVLAS*YVLMCVYGVLVRKTYWSVYGCVVYAPVLCLWNKKTGGF 8
           P V+A    L  V G LV    +    C  Y  +LC W KK G +
Sbjct: 102 PWVVAGFVTLGVVAGGLVLILCYLYTPCCAYLVILCCWFKKWGPY 146



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>CR015_HUMAN (Q96N68) Protein C18orf15|
          Length = 181

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = -2

Query: 152 TQLALCSCKLVCVDVCLW---CACSKDLLVSVRLC-CLCTR 42
           T + +C+C  VCV VC     C C     V V +C C C R
Sbjct: 125 TVVCMCACMCVCVHVCACVYVCMC-----VLVCMCACACMR 160


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,873,704
Number of Sequences: 219361
Number of extensions: 737799
Number of successful extensions: 2106
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2104
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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