ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast56c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MCSP_HUMAN (P49901) Sperm mitochondrial-associated cysteine-rich... 30 1.1
2KR104_HUMAN (P60372) Keratin-associated protein 10-4 (Keratin-as... 30 1.8
3GUN9_ARATH (Q9C9H5) Probable family 9 endoglucanase At1g71380 pr... 27 8.9

>MCSP_HUMAN (P49901) Sperm mitochondrial-associated cysteine-rich protein|
          Length = 116

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 343 SRCSCPLMQSHCCLPTPPIC 284
           S+C CP   +HCC P PP C
Sbjct: 48  SQC-CPPKHNHCCQPKPPCC 66



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>KR104_HUMAN (P60372) Keratin-associated protein 10-4 (Keratin-associated|
           protein 10.4) (High sulfur keratin-associated protein
           10.4) (Keratin-associated protein 18-4)
           (Keratin-associated protein 18.4)
          Length = 401

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/57 (28%), Positives = 21/57 (36%)
 Frame = +1

Query: 181 SALSCICMRHQAPCC*ALFAFVGAAAEEAWPPADCISVALGGSSETA*EGSCSAKLC 351
           S+L C     Q  CC +  +  G        P  C+ V  G SS    + SC    C
Sbjct: 294 SSLCCQQSSCQPACCTSSQSQQGCCVPVCCKPVSCVPVCSGASSSCCQQSSCQPACC 350



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>GUN9_ARATH (Q9C9H5) Probable family 9 endoglucanase At1g71380 precursor (EC|
           3.2.1.4)
          Length = 484

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 404 PAAAAQMQGFSMQVPSLPHNFALQLPSHAV 315
           P   + M GFS   P   H+ A  LPSHA+
Sbjct: 384 PIKMSYMVGFSSNFPKRIHHRASSLPSHAL 413


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,418,025
Number of Sequences: 219361
Number of extensions: 846094
Number of successful extensions: 2201
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2200
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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