ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast56a02 |
|---|---|
| Clone Library Name | barley_pub |
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 40.0 bits (92), Expect = 0.001 Identities = 17/33 (51%), Positives = 23/33 (69%) Frame = -2 Query: 405 NRNGPVEVPYTLLTPRADPTAPHVGGIPNSIAV 307 NRNGPV++PYT+L P + GIPNSI++ Sbjct: 830 NRNGPVKMPYTVLLPTCEDEGLTFRGIPNSISI 862
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 36.2 bits (82), Expect = 0.019 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 6/39 (15%) Frame = -2 Query: 405 NRNGPVEVPYTLLTPRADPTAPHVG------GIPNSIAV 307 NRNGPV++PY LL P G GIPNSI++ Sbjct: 839 NRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 35.8 bits (81), Expect = 0.025 Identities = 20/38 (52%), Positives = 23/38 (60%), Gaps = 5/38 (13%) Frame = -2 Query: 405 NRNGPVEVPYTLLTPR-ADPTAPHVG----GIPNSIAV 307 NRNGP E PY LL P +D T G GIPNSI++ Sbjct: 829 NRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 35.8 bits (81), Expect = 0.025 Identities = 18/33 (54%), Positives = 23/33 (69%) Frame = -2 Query: 405 NRNGPVEVPYTLLTPRADPTAPHVGGIPNSIAV 307 NR+GPVE+PYTLL P + GIPNSI++ Sbjct: 830 NRHGPVEMPYTLLYP-SSKEGLTFRGIPNSISI 861
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 35.4 bits (80), Expect = 0.033 Identities = 17/33 (51%), Positives = 23/33 (69%) Frame = -2 Query: 405 NRNGPVEVPYTLLTPRADPTAPHVGGIPNSIAV 307 NR+GPV VPYTLL P ++ GIPNS+++ Sbjct: 828 NRSGPVNVPYTLLFPTSEEGLTG-KGIPNSVSI 859
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 35.0 bits (79), Expect = 0.043 Identities = 17/33 (51%), Positives = 23/33 (69%) Frame = -2 Query: 405 NRNGPVEVPYTLLTPRADPTAPHVGGIPNSIAV 307 NR GPV++PYTLL P ++ GIPNSI++ Sbjct: 835 NRLGPVQLPYTLLHPNSEGLT--CRGIPNSISI 865
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 34.3 bits (77), Expect = 0.073 Identities = 17/33 (51%), Positives = 23/33 (69%) Frame = -2 Query: 405 NRNGPVEVPYTLLTPRADPTAPHVGGIPNSIAV 307 NR GPV++PYTLL P ++ GIPNSI++ Sbjct: 808 NRLGPVQLPYTLLYPSSEEGLT-FRGIPNSISI 839
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 34.3 bits (77), Expect = 0.073 Identities = 17/33 (51%), Positives = 23/33 (69%) Frame = -2 Query: 405 NRNGPVEVPYTLLTPRADPTAPHVGGIPNSIAV 307 NR GPV++PYTLL P ++ GIPNSI++ Sbjct: 835 NRYGPVKMPYTLLYPSSEEGLT-CRGIPNSISI 866
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 33.5 bits (75), Expect = 0.12 Identities = 17/33 (51%), Positives = 22/33 (66%) Frame = -2 Query: 405 NRNGPVEVPYTLLTPRADPTAPHVGGIPNSIAV 307 NR GPV++PYTLL R+ GIPNSI++ Sbjct: 833 NRTGPVQLPYTLL-HRSSEEGLTFKGIPNSISI 864
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 33.5 bits (75), Expect = 0.12 Identities = 16/33 (48%), Positives = 22/33 (66%) Frame = -2 Query: 405 NRNGPVEVPYTLLTPRADPTAPHVGGIPNSIAV 307 NR+GPV PYTLL P ++ GIPNS+++ Sbjct: 830 NRSGPVNAPYTLLFPTSEGGLTG-KGIPNSVSI 861
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 33.5 bits (75), Expect = 0.12 Identities = 17/33 (51%), Positives = 22/33 (66%) Frame = -2 Query: 405 NRNGPVEVPYTLLTPRADPTAPHVGGIPNSIAV 307 NR GPV++PYTLL P + GIPNSI++ Sbjct: 826 NRCGPVQMPYTLLLP-SSKEGLTFRGIPNSISI 857
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 33.5 bits (75), Expect = 0.12 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 8/41 (19%) Frame = -2 Query: 405 NRNGPVEVPYTLLTPRADPTAPHVG--------GIPNSIAV 307 NRNGP + PY LL P T+ H G GIPNSI++ Sbjct: 825 NRNGPAKFPYMLLYPN---TSDHKGAAAGLTAKGIPNSISI 862
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 33.1 bits (74), Expect = 0.16 Identities = 16/33 (48%), Positives = 21/33 (63%) Frame = -2 Query: 405 NRNGPVEVPYTLLTPRADPTAPHVGGIPNSIAV 307 NR GPV PYTLL P ++ GIPNS+++ Sbjct: 829 NRTGPVNAPYTLLFPTSEGGLTG-KGIPNSVSI 860
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 32.7 bits (73), Expect = 0.21 Identities = 16/33 (48%), Positives = 22/33 (66%) Frame = -2 Query: 405 NRNGPVEVPYTLLTPRADPTAPHVGGIPNSIAV 307 NR GP ++PYTLL P ++ GIPNSI++ Sbjct: 822 NRYGPAKMPYTLLYPSSEEGLT-FRGIPNSISI 853
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 32.3 bits (72), Expect = 0.28 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 5/38 (13%) Frame = -2 Query: 405 NRNGPVEVPYTLLTP-----RADPTAPHVGGIPNSIAV 307 NR GP PYTLL P + D GIPNSI++ Sbjct: 833 NRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 31.2 bits (69), Expect = 0.62 Identities = 16/33 (48%), Positives = 22/33 (66%) Frame = -2 Query: 405 NRNGPVEVPYTLLTPRADPTAPHVGGIPNSIAV 307 +R GPV++PYTLL P + GIPNSI++ Sbjct: 833 HRVGPVQLPYTLLHP-SSKEGLTFRGIPNSISI 864
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/33 (45%), Positives = 22/33 (66%) Frame = -2 Query: 405 NRNGPVEVPYTLLTPRADPTAPHVGGIPNSIAV 307 NR G V++PYTLL P ++ GIPNS+++ Sbjct: 828 NRTGLVKMPYTLLFPSSEGGVTG-RGIPNSVSI 859
>NU2M_CAEEL (P24889) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 282 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = +2 Query: 218 FYLFIYYFTKVILLISYY 271 FYLFIYYF ++LLIS + Sbjct: 172 FYLFIYYFVLMVLLISKF 189
>SIS2_CANTR (Q12600) Protein SIS2 (Halotolerance protein HAL3)| Length = 531 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 7/39 (17%) Frame = -2 Query: 180 KSILSRTG-------RPDKNLIHTSSSN*PQTSLSVPSI 85 KSIL+R +PD N+IH PQ+SL++P I Sbjct: 21 KSILTRISSPPPILNQPDANIIHHPQPQVPQSSLNIPGI 59
>PURA_CAEEL (P91134) Probable adenylosuccinate synthetase (EC 6.3.4.4)| (IMP--aspartate ligase) (AdSS) (AMPSase) Length = 434 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%) Frame = +2 Query: 320 LGIPPTCGAVGSALGVSSVYGT--STGPF 400 +G+PPT AVG+ +GV Y T TGPF Sbjct: 260 IGVPPT--AVGNVIGVVKAYQTRVGTGPF 286
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 5/38 (13%) Frame = -2 Query: 405 NRNGPVEVPYTLLTPR-ADPTAPHVG----GIPNSIAV 307 NR GP PYTL+ P +D G GIPNSI++ Sbjct: 826 NRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>GCSP_BURS3 (Q39KU1) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)| (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 975 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = -2 Query: 189 AESKSILSRTGRPDKNLIHTSSSN*PQT 106 AE+ ++L RTG+P N+ + + PQT Sbjct: 170 AEAMTLLQRTGKPTSNVFYVADDVLPQT 197
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = -2 Query: 405 NRNGPVEVPYTLLTPRAD 352 NR GP ++PYTLL P ++ Sbjct: 716 NRTGPAKMPYTLLYPSSE 733
>VP19_VZVD (P09276) Capsid assembly and DNA maturation protein (Capsid protein| VP19C) Length = 483 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = +1 Query: 1 NICGVDAVQRGPSERART 54 N+C + AV +GP E ART Sbjct: 270 NLCNITAVAKGPQEAART 287
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%) Frame = -2 Query: 405 NRNGPVEVPYTLLTPR------ADPTAPHV---GGIPNSIAV 307 NR+G VPY LL P DPT + GIPNSI++ Sbjct: 895 NRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>NU2M_CAEBR (Q8HEC1) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 282 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = +2 Query: 221 YLFIYYFTKVILLISYY 271 YLF+YYF +ILLIS + Sbjct: 173 YLFVYYFLLMILLISKF 189
>MALQ_SYNY3 (P72785) 4-alpha-glucanotransferase (EC 2.4.1.25) (Amylomaltase)| (Disproportionating enzyme) (D-enzyme) Length = 505 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = +2 Query: 281 YCVDRRTTQTAMLLGIPPTCGAVGSALGVSSVYGTST 391 +C+D T + AM+ G+PP + L + VY T Sbjct: 236 FCLDPETGEAAMMAGVPPDYFSATGQLWGNPVYDWET 272
>NRFI_WOLSU (Q9S1E4) Protein nrfI| Length = 902 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +1 Query: 208 KSTFLFIYLLLYQGHTFDILLLHMILCRPTHY 303 K T+ +I +LLY L+LH+ L RP HY Sbjct: 805 KETWSYISILLYA------LILHLRLLRPKHY 830 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,967,366 Number of Sequences: 219361 Number of extensions: 1049732 Number of successful extensions: 2251 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2224 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2251 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
