ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast55g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein 78 5e-15
2CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor ... 61 8e-10
314KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor 56 2e-08
4HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly... 37 0.012
5T2R55_PAPHA (Q646G3) Taste receptor type 2 member 55 (T2R55) 30 1.5
6COBL8_ARATH (Q9LIB6) COBRA-like protein 8 precursor 29 2.5
7TY3H_CAEEL (P90986) Tyrosine 3-monooxygenase (EC 1.14.16.2) (Tyr... 28 5.6
8RNPH_BIFLO (Q8G7I0) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tR... 28 7.4
9SODC1_MESCR (P93258) Superoxide dismutase [Cu-Zn] 1 (EC 1.15.1.1) 28 7.4
10YNG2_CAEEL (Q21653) Hypothetical protein R02F2.2 27 9.6

>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein|
          Length = 346

 Score = 78.2 bits (191), Expect = 5e-15
 Identities = 33/46 (71%), Positives = 41/46 (89%)
 Frame = -1

Query: 340 DLDAALCLCTTIKLKALNINLVLPIAIEVLVNQCGKTVPDDFKCPS 203
           DLDAA+CLCTTI+LK LNIN++LPIA++VL++ CGK  P DFKCPS
Sbjct: 300 DLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKCPS 345



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>CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor (Root-specific|
           protein ZRP3)
          Length = 129

 Score = 60.8 bits (146), Expect = 8e-10
 Identities = 24/46 (52%), Positives = 34/46 (73%)
 Frame = -1

Query: 340 DLDAALCLCTTIKLKALNINLVLPIAIEVLVNQCGKTVPDDFKCPS 203
           DLDAALCLCT IK   L I+L +P+++  ++N CG+  P+DF CP+
Sbjct: 84  DLDAALCLCTAIKANVLGIHLNVPLSLNFILNNCGRICPEDFTCPN 129



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>14KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor|
          Length = 137

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 24/44 (54%), Positives = 33/44 (75%)
 Frame = -1

Query: 340 DLDAALCLCTTIKLKALNINLVLPIAIEVLVNQCGKTVPDDFKC 209
           +L+AA+CLCT IK   L  NL LPIA+ +++N CGK VP+ F+C
Sbjct: 93  NLEAAVCLCTAIKANILGKNLNLPIALSLVLNNCGKQVPNGFEC 136



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>HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly m 1)|
          Length = 80

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 18/45 (40%), Positives = 31/45 (68%)
 Frame = -1

Query: 340 DLDAALCLCTTIKLKALNINLVLPIAIEVLVNQCGKTVPDDFKCP 206
           D++A +CLC  I+L+AL I L L   +++++N CG++ P +  CP
Sbjct: 37  DIEAIVCLC--IQLRALGI-LNLNRNLQLILNSCGRSYPSNATCP 78



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>T2R55_PAPHA (Q646G3) Taste receptor type 2 member 55 (T2R55)|
          Length = 314

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 137 MGVSLADEGDAHSTIYST*WSLT-RALEVVGHCLATLVDEHLDGNGQHEVDVERL 298
           +G++   EG  +  ++S  + LT  A+  +GH L  L D H+ G   H    +R+
Sbjct: 27  IGLANCSEGIKNQKVFSVDFILTCLAISTIGHLLVILFDSHVAGLAPHLYATDRV 81



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>COBL8_ARATH (Q9LIB6) COBRA-like protein 8 precursor|
          Length = 653

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = -2

Query: 255 CSSTNVARQCPTTSSALVKLHQVLYI 178
           CSS  VAR C TTS AL   +Q L I
Sbjct: 435 CSSDRVARTCSTTSPALPLPYQALLI 460



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>TY3H_CAEEL (P90986) Tyrosine 3-monooxygenase (EC 1.14.16.2) (Tyrosine|
           3-hydroxylase) (TH)
          Length = 454

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 16  GYYLIDNYTNKMHACSTAPHHK 81
           G  L+  Y   MHACS AP HK
Sbjct: 341 GAGLLSAYGELMHACSDAPEHK 362



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>RNPH_BIFLO (Q8G7I0) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 248

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 218 VVGHCLATLVDEHLDGNGQHEVDVERLELDGG 313
           ++G CL  ++D    G  Q ++D + L+ DGG
Sbjct: 100 LIGRCLRGVIDMKALGENQIQLDCDVLQADGG 131



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>SODC1_MESCR (P93258) Superoxide dismutase [Cu-Zn] 1 (EC 1.15.1.1)|
          Length = 152

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 131 DLMGVSLADEGDAHSTIYST*WSLTRALEVVGHCLATLVDEHLDGNGQHEV 283
           DL  +++ D+G A  TI  +   LT    +VG  +    D    G G HE+
Sbjct: 82  DLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHADPDDLGRGGHEL 132



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>YNG2_CAEEL (Q21653) Hypothetical protein R02F2.2|
          Length = 1182

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 227 HCLATLVDEHLDGNGQHEVDVERLE 301
           HCLA  +++H DG+ Q E  +  +E
Sbjct: 535 HCLAVAINQHKDGSEQMEQRLREIE 559


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,403,708
Number of Sequences: 219361
Number of extensions: 757921
Number of successful extensions: 1613
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1613
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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