ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast55g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UNG_BUCBP (P59465) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG) 28 4.3
2YM59_YEAST (Q03648) Hypothetical 52.2 kDa protein in RAR1-SCJ1 i... 28 4.3
3SYBL1_PONPY (Q5RF94) Synaptobrevin-like protein 1 28 4.3
4SYBL1_HUMAN (P51809) Synaptobrevin-like protein 1 (Tetanus insen... 28 4.3
5MAO1_SHEON (Q8EAP2) NAD-dependent malic enzyme (EC 1.1.1.38) (NA... 28 5.6

>UNG_BUCBP (P59465) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 224

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 158 LTPWSSIVIDESLKICHFVGLITLLLYHMQ-RMVFGPKADVCYLFM 24
           L  WSSI+ +E  K  +F+ +I  L +  Q +M+F PK  V   F+
Sbjct: 6   LLNWSSILKNEKKKY-YFINIINHLFFERQKKMIFPPKGKVFNAFV 50



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>YM59_YEAST (Q03648) Hypothetical 52.2 kDa protein in RAR1-SCJ1 intergenic|
           region
          Length = 457

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 234 DYDKIVFCLLHVCETISNLAKRMALTHTLELHC 136
           DYDKI+ C  +  +T  N+ + ++    L+ +C
Sbjct: 349 DYDKIIICSAYFIDTAENMFEYLSSIEALKKYC 381



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>SYBL1_PONPY (Q5RF94) Synaptobrevin-like protein 1|
          Length = 219

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 190 CFTNMKQTENYLVIIIIEAS*LIYVNINPLCSSF 291
           C  N+K T    +IIII +   IY+ ++PLC  F
Sbjct: 182 CMKNLKLT----IIIIIVSIVFIYIIVSPLCGGF 211



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>SYBL1_HUMAN (P51809) Synaptobrevin-like protein 1 (Tetanus insensitive VAMP)|
           (Ti-VAMP) (Ti-VAMP/VAMP7)
          Length = 219

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 190 CFTNMKQTENYLVIIIIEAS*LIYVNINPLCSSF 291
           C  N+K T    +IIII +   IY+ ++PLC  F
Sbjct: 182 CMKNLKLT----IIIIIVSIVFIYIIVSPLCGGF 211



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>MAO1_SHEON (Q8EAP2) NAD-dependent malic enzyme (EC 1.1.1.38) (NAD-ME)|
          Length = 562

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 258 DELRSFNDDYDKIVFCLLHVCETISNLAKRMALTHTLEL 142
           D+ RSFN+D DK ++ L ++ +T   L  R+   H  E+
Sbjct: 59  DQFRSFNNDLDKHIY-LRNIQDTNETLFYRLVQNHISEM 96


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,891,240
Number of Sequences: 219361
Number of extensions: 835028
Number of successful extensions: 2079
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2079
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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