ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast55c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2) 29 4.1
2MRGA2_MOUSE (Q91WW4) Mas-related G-protein coupled receptor memb... 28 7.1
3YFB2_YEAST (P43580) Hypothetical 17.2 kDa protein in HSP12-HXT10... 28 7.1
4CT012_MOUSE (Q8C008) Protein C20orf12 homolog 28 7.1
5FBXW9_HUMAN (Q5XUX1) F-box/WD-repeat protein 9 (F-box and WD-40 ... 28 9.2

>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 143  CISYILLNFNSSLCGSKPSLCSIVFHVCNIMI 48
            C +  +   N+SLC  KPS+C + F V + M+
Sbjct: 4879 CCNITVCKCNTSLCKEKPSVCPLGFEVKSKMV 4910



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>MRGA2_MOUSE (Q91WW4) Mas-related G-protein coupled receptor member A2|
          Length = 305

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = -3

Query: 227 GFGGNNLQLWCYEAHHCIFTHSIFFDMNCISYILLNFNSSLCGS----KPSLCSIVFHVC 60
           G  GN +  W    H      S++     ++  L   +S +  +    K S  SI+FH+C
Sbjct: 27  GLMGNAIVFWLLGFHLRRNAFSVYILNLALADFLFLLSSIIASTLFLLKVSYLSIIFHLC 86

Query: 59  NIMILLICYMT 27
              I+++ Y+T
Sbjct: 87  FNTIMMVVYIT 97



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>YFB2_YEAST (P43580) Hypothetical 17.2 kDa protein in HSP12-HXT10 intergenic|
           region
          Length = 148

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 319 LVSHFVQSMNHTPGKTIPRVNLQNKTQILSPKPI 420
           LVSH V  +NH+P  T      QN  ++   +P+
Sbjct: 34  LVSHIVIEINHSPTATTDETRKQNNPELKVKEPV 67



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>CT012_MOUSE (Q8C008) Protein C20orf12 homolog|
          Length = 778

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 13/37 (35%), Positives = 25/37 (67%)
 Frame = +1

Query: 310 QASLVSHFVQSMNHTPGKTIPRVNLQNKTQILSPKPI 420
           ++SLVS + QS++ TP       NL+ K+ +++P+P+
Sbjct: 592 RSSLVSAYSQSVSDTPESIKKMKNLKAKSFLVNPEPL 628



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>FBXW9_HUMAN (Q5XUX1) F-box/WD-repeat protein 9 (F-box and WD-40 domain protein|
           9)
          Length = 478

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 327 PFCSIDESYSWQDDSQGQSSEQNADPQPQAYIS 425
           P    D+S +W DDS  + SE + D Q +AY++
Sbjct: 4   PLGRCDDSRTWDDDSDPE-SETDPDAQAKAYVA 35


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,966,227
Number of Sequences: 219361
Number of extensions: 1174520
Number of successful extensions: 2391
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2389
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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