ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast55c07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 98 3e-17
2gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare str... 98 3e-17
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
4gb|AC121491.2| Oryza sativa (japonica cultivar-group) chromosome... 98 3e-17
5dbj|AK100470.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
6gb|AY111637.1| Zea mays CL22329_1 mRNA sequence 90 7e-15
7gb|AY258461.1| Podovirus SOG clone SOG-S-R DNA polymerase gene, ... 44 0.37
8gb|AC132616.2| Mus musculus BAC clone RP23-317F10 from chromosom... 44 0.37
9dbj|D30657.1|POPPALB Populus kitakamiensis gene for phenylalanin... 44 0.37
10gb|AC102475.7| Mus musculus chromosome 8, clone RP24-393D2, comp... 42 1.5
11gb|AY263365.1| Homo sapiens tissue factor pathway inhibitor (lip... 42 1.5
12gb|AC067742.7| Homo sapiens chromosome 10 clone RP11-508P23, com... 42 1.5
13gb|AC022398.7| Homo sapiens chromosome 10 clone RP11-491H19, com... 42 1.5
14gb|AC007319.2| Homo sapiens BAC clone RP11-432D12 from 2, comple... 42 1.5
15gb|AC137070.2| Genomic sequence for Oryza sativa, Nipponbare str... 42 1.5
16gb|AC090358.16| Homo sapiens chromosome 18, clone RP11-775G23, c... 42 1.5
17dbj|AK067657.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
18emb|BX957305.5| Zebrafish DNA sequence from clone DKEYP-11G8 in ... 42 1.5
19emb|AL592243.14| Mouse DNA sequence from clone RP23-101B24 on ch... 42 1.5
20dbj|D43802.1|POPPALG2BA Populus kitakamiensis gene for phenylala... 42 1.5
21gb|AC167143.2| Mus musculus BAC clone RP23-38J9 from chromosome ... 40 5.8
22gb|AY346009.1| Helianthus annuus ABRC5 mRNA, complete cds 40 5.8
23gb|AC124142.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
24gb|AC148814.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
25ref|XM_534317.2| PREDICTED: Canis familiaris similar to signal s... 40 5.8
26emb|CR933559.5| Zebrafish DNA sequence from clone DKEY-51M8 in l... 40 5.8
27gb|AC149474.15| Medicago truncatula clone mth2-122l24, complete ... 40 5.8
28emb|AL513166.7| Human DNA sequence from clone RP11-261J10 on chr... 40 5.8
29emb|AL390027.11| Human DNA sequence from clone RP11-368G3 on chr... 40 5.8
30emb|AL360007.11| Human DNA sequence from clone RP11-753B14 on ch... 40 5.8
31emb|AL358119.12| Human DNA sequence from clone RP11-331P7 on chr... 40 5.8
32emb|AL354738.13| Human DNA sequence from clone RP11-628O6 on chr... 40 5.8
33emb|AL080284.20|HSJ177I10 Human DNA sequence from clone RP1-177I... 40 5.8
34emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, ... 40 5.8
35emb|AL034556.4|PFMAL3P5 Plasmodium falciparum MAL3P5, complete s... 40 5.8
36emb|AL592465.8| Mouse DNA sequence from clone RP23-36C4 on chrom... 40 5.8
37emb|BX465223.9| Zebrafish DNA sequence from clone RP71-8E8 in li... 40 5.8
38gb|AC106726.3| Homo sapiens 3 BAC RP11-450I19 (Roswell Park Canc... 40 5.8
39gb|AC107309.6| Homo sapiens 3 BAC RP11-619J2 (Roswell Park Cance... 40 5.8
40gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 5.8
41gb|AC146572.11| Medicago truncatula clone mth2-104c10, complete ... 40 5.8
42gb|AC108700.4| Homo sapiens 3 BAC RP11-14B7 (Roswell Park Cancer... 40 5.8
43gb|DP000042.1| Lemur catta target 106 genomic scaffold 40 5.8
44emb|BX323560.16| Zebrafish DNA sequence from clone DKEY-265E15 i... 40 5.8
45emb|AL112345.1|CNS01A0X Botrytis cinerea strain T4 cDNA library 40 5.8
46dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
47dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
48gb|AC010744.7| Homo sapiens BAC clone RP11-548D17 from 2, comple... 40 5.8
49gb|AC152417.3| Mus musculus BAC clone RP23-56I21 from chromosome... 40 5.8
50gb|AC009480.4| Homo sapiens BAC clone RP11-295N18 from 2, comple... 40 5.8
51gb|AC117651.8| Mus musculus chromosome 3, clone RP23-287I17, com... 40 5.8
52dbj|AB028613.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.8
53dbj|AK105279.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
54gb|AF096371.1|T2L5 Arabidopsis thaliana BAC T2L5 40 5.8
55emb|AL928591.14| Mouse DNA sequence from clone RP23-422B24 on ch... 40 5.8
56gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
57emb|AL837527.2|CNS08CAQ Oryza sativa chromosome 12, . BAC OSJNBb... 40 5.8
58gb|AC132135.3| Mus musculus BAC clone RP23-268C21 from 10, compl... 40 5.8
59gb|AY653733.1| Acanthamoeba polyphaga mimivirus, complete genome 40 5.8
60dbj|AP006116.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 5.8 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 94/109 (86%)
 Strand = Plus / Minus

                                                                            
Query: 319      ctagtcagccattttgttcaatcgatgaatcatactcctggcaagacgattcccagggtc 378
                |||||||||||| |||||||  ||||| ||||||||||| ||||| | |||||| |||||
Sbjct: 12665813 ctagtcagccatcttgttcaggcgatggatcatactcctcgcaagcctattccctgggtc 12665754

                                                                 
Query: 379      aatcttcagaacaaaacgcagatcctcagccccaagcctatatttctca 427
                ||| |||||||| ||||| || ||||| || |||||||| |||||||||
Sbjct: 12665753 aattttcagaaccaaacggaggtcctctgcaccaagcctgtatttctca 12665705



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 61/69 (88%), Gaps = 1/69 (1%)
 Strand = Plus / Minus

                                                                            
Query: 208      aaattattacccccaaagccagaagtatagtaaaacaatttgaaataactcacagtttcc 267
                |||||||| ||||||||| || |||||||||||| |||||  |||||||||||||||  |
Sbjct: 12665922 aaattatt-cccccaaaggcacaagtatagtaaatcaattcaaaataactcacagttctc 12665864

                         
Query: 268      gtgtcaagg 276
                |||||||||
Sbjct: 12665863 gtgtcaagg 12665855



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 29       tcatataacaaattaacaata 49
                |||||||||||||||||||||
Sbjct: 11879014 tcatataacaaattaacaata 11879034
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>gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0030D15, from chromosome 3, complete sequence
          Length = 151972

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 94/109 (86%)
 Strand = Plus / Plus

                                                                         
Query: 319   ctagtcagccattttgttcaatcgatgaatcatactcctggcaagacgattcccagggtc 378
             |||||||||||| |||||||  ||||| ||||||||||| ||||| | |||||| |||||
Sbjct: 11176 ctagtcagccatcttgttcaggcgatggatcatactcctcgcaagcctattccctgggtc 11235

                                                              
Query: 379   aatcttcagaacaaaacgcagatcctcagccccaagcctatatttctca 427
             ||| |||||||| ||||| || ||||| || |||||||| |||||||||
Sbjct: 11236 aattttcagaaccaaacggaggtcctctgcaccaagcctgtatttctca 11284



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 61/69 (88%), Gaps = 1/69 (1%)
 Strand = Plus / Plus

                                                                         
Query: 208   aaattattacccccaaagccagaagtatagtaaaacaatttgaaataactcacagtttcc 267
             |||||||| ||||||||| || |||||||||||| |||||  |||||||||||||||  |
Sbjct: 11067 aaattatt-cccccaaaggcacaagtatagtaaatcaattcaaaataactcacagttctc 11125

                      
Query: 268   gtgtcaagg 276
             |||||||||
Sbjct: 11126 gtgtcaagg 11134
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 94/109 (86%)
 Strand = Plus / Minus

                                                                            
Query: 319      ctagtcagccattttgttcaatcgatgaatcatactcctggcaagacgattcccagggtc 378
                |||||||||||| |||||||  ||||| ||||||||||| ||||| | |||||| |||||
Sbjct: 12662576 ctagtcagccatcttgttcaggcgatggatcatactcctcgcaagcctattccctgggtc 12662517

                                                                 
Query: 379      aatcttcagaacaaaacgcagatcctcagccccaagcctatatttctca 427
                ||| |||||||| ||||| || ||||| || |||||||| |||||||||
Sbjct: 12662516 aattttcagaaccaaacggaggtcctctgcaccaagcctgtatttctca 12662468



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 61/69 (88%), Gaps = 1/69 (1%)
 Strand = Plus / Minus

                                                                            
Query: 208      aaattattacccccaaagccagaagtatagtaaaacaatttgaaataactcacagtttcc 267
                |||||||| ||||||||| || |||||||||||| |||||  |||||||||||||||  |
Sbjct: 12662685 aaattatt-cccccaaaggcacaagtatagtaaatcaattcaaaataactcacagttctc 12662627

                         
Query: 268      gtgtcaagg 276
                |||||||||
Sbjct: 12662626 gtgtcaagg 12662618



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 29       tcatataacaaattaacaata 49
                |||||||||||||||||||||
Sbjct: 11875777 tcatataacaaattaacaata 11875797
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>gb|AC121491.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0050D18, complete sequence
          Length = 126350

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 94/109 (86%)
 Strand = Plus / Minus

                                                                         
Query: 319   ctagtcagccattttgttcaatcgatgaatcatactcctggcaagacgattcccagggtc 378
             |||||||||||| |||||||  ||||| ||||||||||| ||||| | |||||| |||||
Sbjct: 20266 ctagtcagccatcttgttcaggcgatggatcatactcctcgcaagcctattccctgggtc 20207

                                                              
Query: 379   aatcttcagaacaaaacgcagatcctcagccccaagcctatatttctca 427
             ||| |||||||| ||||| || ||||| || |||||||| |||||||||
Sbjct: 20206 aattttcagaaccaaacggaggtcctctgcaccaagcctgtatttctca 20158



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 61/69 (88%), Gaps = 1/69 (1%)
 Strand = Plus / Minus

                                                                         
Query: 208   aaattattacccccaaagccagaagtatagtaaaacaatttgaaataactcacagtttcc 267
             |||||||| ||||||||| || |||||||||||| |||||  |||||||||||||||  |
Sbjct: 20375 aaattatt-cccccaaaggcacaagtatagtaaatcaattcaaaataactcacagttctc 20317

                      
Query: 268   gtgtcaagg 276
             |||||||||
Sbjct: 20316 gtgtcaagg 20308
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>dbj|AK100470.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093E24, full
            insert sequence
          Length = 1833

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 94/109 (86%)
 Strand = Plus / Minus

                                                                        
Query: 319  ctagtcagccattttgttcaatcgatgaatcatactcctggcaagacgattcccagggtc 378
            |||||||||||| |||||||  ||||| ||||||||||| ||||| | |||||| |||||
Sbjct: 1626 ctagtcagccatcttgttcaggcgatggatcatactcctcgcaagcctattccctgggtc 1567

                                                             
Query: 379  aatcttcagaacaaaacgcagatcctcagccccaagcctatatttctca 427
            ||| |||||||| ||||| || ||||| || |||||||| |||||||||
Sbjct: 1566 aattttcagaaccaaacggaggtcctctgcaccaagcctgtatttctca 1518



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 61/69 (88%), Gaps = 1/69 (1%)
 Strand = Plus / Minus

                                                                        
Query: 208  aaattattacccccaaagccagaagtatagtaaaacaatttgaaataactcacagtttcc 267
            |||||||| ||||||||| || |||||||||||| |||||  |||||||||||||||  |
Sbjct: 1735 aaattatt-cccccaaaggcacaagtatagtaaatcaattcaaaataactcacagttctc 1677

                     
Query: 268  gtgtcaagg 276
            |||||||||
Sbjct: 1676 gtgtcaagg 1668
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>gb|AY111637.1| Zea mays CL22329_1 mRNA sequence
          Length = 345

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 96/113 (84%)
 Strand = Plus / Plus

                                                                       
Query: 314 catccctagtcagccattttgttcaatcgatgaatcatactcctggcaagacgattccca 373
           ||||||||||||||||  |||||||  || |||||  ||||||||||||| | |||   |
Sbjct: 136 catccctagtcagccaacttgttcaggcggtgaattgtactcctggcaagcctatttgta 195

                                                                
Query: 374 gggtcaatcttcagaacaaaacgcagatcctcagccccaagcctatatttctc 426
           || |||||||||||||| |||||||| ||||| || |||||||||||||||||
Sbjct: 196 ggatcaatcttcagaaccaaacgcaggtcctcggcaccaagcctatatttctc 248
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>gb|AY258461.1| Podovirus SOG clone SOG-S-R DNA polymerase gene, partial cds
          Length = 1227

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 271 tcaaggatgattacgatggtgg 292
           ||||||||||||||||||||||
Sbjct: 140 tcaaggatgattacgatggtgg 161
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>gb|AC132616.2| Mus musculus BAC clone RP23-317F10 from chromosome 14, complete
             sequence
          Length = 213684

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 130   atatatgatatacaattcatat 151
             ||||||||||||||||||||||
Sbjct: 54177 atatatgatatacaattcatat 54156
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>dbj|D30657.1|POPPALB Populus kitakamiensis gene for phenylalanine ammonia-lyase, complete
            cds, clone palg2a
          Length = 4080

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 34   taacaaattaacaatatcatga 55
            ||||||||||||||||||||||
Sbjct: 1377 taacaaattaacaatatcatga 1356
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>gb|AC102475.7| Mus musculus chromosome 8, clone RP24-393D2, complete sequence
          Length = 136660

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 192   ataacaccaaagttgtaaatt 212
             |||||||||||||||||||||
Sbjct: 17519 ataacaccaaagttgtaaatt 17499
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>gb|AY263365.1| Homo sapiens tissue factor pathway inhibitor (lipoprotein-associated
            coagulation inhibitor) (TFPI) gene, complete cds
          Length = 38945

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 29   tcatataacaaattaacaatatcat 53
            |||||||| ||||||||||||||||
Sbjct: 7093 tcatataaaaaattaacaatatcat 7117
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>gb|AC067742.7| Homo sapiens chromosome 10 clone RP11-508P23, complete sequence
          Length = 119222

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 125  ataaaatatatgatatacaat 145
            |||||||||||||||||||||
Sbjct: 1151 ataaaatatatgatatacaat 1171
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>gb|AC022398.7| Homo sapiens chromosome 10 clone RP11-491H19, complete sequence
          Length = 169184

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 125 ataaaatatatgatatacaat 145
           |||||||||||||||||||||
Sbjct: 850 ataaaatatatgatatacaat 830
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>gb|AC007319.2| Homo sapiens BAC clone RP11-432D12 from 2, complete sequence
          Length = 192334

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 29     tcatataacaaattaacaatatcat 53
              |||||||| ||||||||||||||||
Sbjct: 150959 tcatataaaaaattaacaatatcat 150935
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>gb|AC137070.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0035J18, from chromsome 3, complete sequence
          Length = 162711

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 29    tcatataacaaattaacaata 49
             |||||||||||||||||||||
Sbjct: 31639 tcatataacaaattaacaata 31619
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>gb|AC090358.16| Homo sapiens chromosome 18, clone RP11-775G23, complete sequence
          Length = 176680

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 120   gttcaataaaatatatgatat 140
             |||||||||||||||||||||
Sbjct: 12190 gttcaataaaatatatgatat 12170
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>dbj|AK067657.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013115O15, full
           insert sequence
          Length = 3802

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 29  tcatataacaaattaacaata 49
           |||||||||||||||||||||
Sbjct: 919 tcatataacaaattaacaata 899
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>emb|BX957305.5| Zebrafish DNA sequence from clone DKEYP-11G8 in linkage group 20,
             complete sequence
          Length = 128283

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 226   ccagaagtatagtaaaacaat 246
             |||||||||||||||||||||
Sbjct: 36415 ccagaagtatagtaaaacaat 36395
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>emb|AL592243.14| Mouse DNA sequence from clone RP23-101B24 on chromosome 1, complete
              sequence
          Length = 193810

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 233    tatagtaaaacaatttgaaataact 257
              ||||||||||| |||||||||||||
Sbjct: 125227 tatagtaaaactatttgaaataact 125251
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>dbj|D43802.1|POPPALG2BA Populus kitakamiensis gene for phenylalanine ammonia-lyase, complete
            cds (exon 1 and exon 2)
          Length = 4652

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 34   taacaaattaacaatatcatg 54
            |||||||||||||||||||||
Sbjct: 1806 taacaaattaacaatatcatg 1786
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>gb|AC167143.2| Mus musculus BAC clone RP23-38J9 from chromosome 3, complete sequence
          Length = 187770

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    tattaaagttcaataaaata 132
              ||||||||||||||||||||
Sbjct: 166837 tattaaagttcaataaaata 166856
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>gb|AY346009.1| Helianthus annuus ABRC5 mRNA, complete cds
          Length = 812

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 31 atataacaaattaacaatat 50
          ||||||||||||||||||||
Sbjct: 46 atataacaaattaacaatat 27
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>gb|AC124142.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0015A05, complete sequence
          Length = 127330

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   taaagttcaataaaatatat 135
             ||||||||||||||||||||
Sbjct: 65557 taaagttcaataaaatatat 65576
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>gb|AC148814.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0077J22, complete sequence
          Length = 173903

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   taaagttcaataaaatatat 135
             ||||||||||||||||||||
Sbjct: 27191 taaagttcaataaaatatat 27210
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>ref|XM_534317.2| PREDICTED: Canis familiaris similar to signal sequence receptor,
            gamma, transcript variant 1 (LOC477124), mRNA
          Length = 1112

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 245  atttgaaataactcacagtt 264
            ||||||||||||||||||||
Sbjct: 1093 atttgaaataactcacagtt 1112
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>emb|CR933559.5| Zebrafish DNA sequence from clone DKEY-51M8 in linkage group 11, complete
              sequence
          Length = 119833

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 32     tataacaaattaacaatatcatga 55
              ||||||||||||| ||||||||||
Sbjct: 101514 tataacaaattaaaaatatcatga 101491
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>gb|AC149474.15| Medicago truncatula clone mth2-122l24, complete sequence
          Length = 129008

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    caataaaatatatgatatac 142
              ||||||||||||||||||||
Sbjct: 117800 caataaaatatatgatatac 117819
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>emb|AL513166.7| Human DNA sequence from clone RP11-261J10 on chromosome 1, complete
             sequence
          Length = 170817

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   actattaaagttcaataaaa 130
             ||||||||||||||||||||
Sbjct: 37442 actattaaagttcaataaaa 37461
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>emb|AL390027.11| Human DNA sequence from clone RP11-368G3 on chromosome X Contains an
             UDP-GlcNAc:betaGal
             beta-1,3-N-acetylglucosaminyltransferase 1 (B3GNT1)
             pseudogene, complete sequence
          Length = 200191

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   aagtatagtaaaacaatttg 249
             ||||||||||||||||||||
Sbjct: 77259 aagtatagtaaaacaatttg 77278
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>emb|AL360007.11| Human DNA sequence from clone RP11-753B14 on chromosome 6 Contains a
             novel gene, the 5' end of a novel gene and a CpG island,
             complete sequence
          Length = 90011

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 196   caccaaagttgtaaattattaccc 219
             |||||||||| |||||||||||||
Sbjct: 26369 caccaaagttataaattattaccc 26392
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>emb|AL358119.12| Human DNA sequence from clone RP11-331P7 on chromosome 1, complete
             sequence
          Length = 157124

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   tcaataaaatatatgatata 141
             ||||||||||||||||||||
Sbjct: 51312 tcaataaaatatatgatata 51293
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>emb|AL354738.13| Human DNA sequence from clone RP11-628O6 on chromosome 9 Contains part
             of a novel gene (FLJ20276), complete sequence
          Length = 64981

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   aataaaatatatgatataca 143
             ||||||||||||||||||||
Sbjct: 20022 aataaaatatatgatataca 20003
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>emb|AL080284.20|HSJ177I10 Human DNA sequence from clone RP1-177I10 on chromosome 6q16.1-16.3
             Contains a novel gene, complete sequence
          Length = 160750

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   catatcaaagaatatactgt 166
             ||||||||||||||||||||
Sbjct: 93069 catatcaaagaatatactgt 93088
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>emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70
          Length = 198429

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     catataacaaattaacaata 49
              ||||||||||||||||||||
Sbjct: 177277 catataacaaattaacaata 177296
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>emb|AL034556.4|PFMAL3P5 Plasmodium falciparum MAL3P5, complete sequence
          Length = 86826

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                             
Query: 111   actattaaagttcaataaaatatatgatatac 142
             ||||||||| |||||||||| |||||||||||
Sbjct: 37055 actattaaa-ttcaataaaacatatgatatac 37085
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>emb|AL592465.8| Mouse DNA sequence from clone RP23-36C4 on chromosome 11 Contains the
              Tbx4 gene for T-box 4, a ribosomal protein L21 (Rpl21)
              pseudogene and the 3' end of the Brip1 gene for BRCA1
              interacting protein C-terminal helicase 1, complete
              sequence
          Length = 238358

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 126    taaaatatatgatatacaattcat 149
              |||| |||||||||||||||||||
Sbjct: 184110 taaactatatgatatacaattcat 184087
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>emb|BX465223.9| Zebrafish DNA sequence from clone RP71-8E8 in linkage group 11, complete
              sequence
          Length = 183229

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 32     tataacaaattaacaatatcatga 55
              ||||||||||||| ||||||||||
Sbjct: 162990 tataacaaattaaaaatatcatga 163013
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>gb|AC106726.3| Homo sapiens 3 BAC RP11-450I19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 200359

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 26     aggtcatataacaaattaacaata 49
              ||||||||||||||||||| ||||
Sbjct: 199442 aggtcatataacaaattaataata 199419
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>gb|AC107309.6| Homo sapiens 3 BAC RP11-619J2 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 20273

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 26   aggtcatataacaaattaacaata 49
            ||||||||||||||||||| ||||
Sbjct: 1086 aggtcatataacaaattaataata 1063
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   cagatcctcagccccaagcc 416
             ||||||||||||||||||||
Sbjct: 99977 cagatcctcagccccaagcc 99996
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>gb|AC146572.11| Medicago truncatula clone mth2-104c10, complete sequence
          Length = 109548

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 25     aaggtcatataacaaattaacaat 48
              |||| |||||||||||||||||||
Sbjct: 101603 aaggacatataacaaattaacaat 101626
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>gb|AC108700.4| Homo sapiens 3 BAC RP11-14B7 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 155455

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 123    caataaaatatatgatatacaatt 146
              |||||||||| |||||||||||||
Sbjct: 125846 caataaaataaatgatatacaatt 125823
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>gb|DP000042.1| Lemur catta target 106 genomic scaffold
          Length = 452647

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   acaatttgaaataactcaca 261
             ||||||||||||||||||||
Sbjct: 65833 acaatttgaaataactcaca 65814
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>emb|BX323560.16| Zebrafish DNA sequence from clone DKEY-265E15 in linkage group 4,
            complete sequence
          Length = 190574

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 376  gtcaatcttcagaacaaaac 395
            ||||||||||||||||||||
Sbjct: 1770 gtcaatcttcagaacaaaac 1751
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>emb|AL112345.1|CNS01A0X Botrytis cinerea strain T4 cDNA library
          Length = 720

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 130 atatatgatatacaattcatatca 153
           ||||||||||| ||||||||||||
Sbjct: 606 atatatgatatccaattcatatca 583
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 327      ccattttgttcaatcgatga 346
                ||||||||||||||||||||
Sbjct: 19651872 ccattttgttcaatcgatga 19651853
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 116     taaagttcaataaaatatat 135
               ||||||||||||||||||||
Sbjct: 2580671 taaagttcaataaaatatat 2580690
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>gb|AC010744.7| Homo sapiens BAC clone RP11-548D17 from 2, complete sequence
          Length = 186687

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 238    taaaacaatttgaaataact 257
              ||||||||||||||||||||
Sbjct: 139960 taaaacaatttgaaataact 139979
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>gb|AC152417.3| Mus musculus BAC clone RP23-56I21 from chromosome 10, complete sequence
          Length = 233783

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 130   atatatgatatacaattcatatca 153
             ||||||||||||||||| ||||||
Sbjct: 73576 atatatgatatacaattaatatca 73553
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>gb|AC009480.4| Homo sapiens BAC clone RP11-295N18 from 2, complete sequence
          Length = 188353

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    aaacaatttgaaataactca 259
              ||||||||||||||||||||
Sbjct: 139790 aaacaatttgaaataactca 139771
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>gb|AC117651.8| Mus musculus chromosome 3, clone RP23-287I17, complete sequence
          Length = 229602

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 113    tattaaagttcaataaaata 132
              ||||||||||||||||||||
Sbjct: 147629 tattaaagttcaataaaata 147610
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>dbj|AB028613.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MGG23
          Length = 35313

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 143 aattcatatcaaagaatata 162
           ||||||||||||||||||||
Sbjct: 513 aattcatatcaaagaatata 494
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>dbj|AK105279.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-B08, full
            insert sequence
          Length = 2043

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 327  ccattttgttcaatcgatga 346
            ||||||||||||||||||||
Sbjct: 1407 ccattttgttcaatcgatga 1388
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>gb|AF096371.1|T2L5 Arabidopsis thaliana BAC T2L5
          Length = 77905

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 143   aattcatatcaaagaatata 162
             ||||||||||||||||||||
Sbjct: 50968 aattcatatcaaagaatata 50949
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>emb|AL928591.14| Mouse DNA sequence from clone RP23-422B24 on chromosome 4, complete
             sequence
          Length = 158629

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    atataacaaattaacaatat 50
             ||||||||||||||||||||
Sbjct: 91087 atataacaaattaacaatat 91068
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 327      ccattttgttcaatcgatga 346
                ||||||||||||||||||||
Sbjct: 19578086 ccattttgttcaatcgatga 19578067
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>emb|AL837527.2|CNS08CAQ Oryza sativa chromosome 12, . BAC OSJNBb0078B20 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 133659

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   ccattttgttcaatcgatga 346
             ||||||||||||||||||||
Sbjct: 75121 ccattttgttcaatcgatga 75140
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>gb|AC132135.3| Mus musculus BAC clone RP23-268C21 from 10, complete sequence
          Length = 168874

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 130   atatatgatatacaattcatatca 153
             ||||||||||||||||| ||||||
Sbjct: 51919 atatatgatatacaattaatatca 51896
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>gb|AY653733.1| Acanthamoeba polyphaga mimivirus, complete genome
          Length = 1181404

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    tcaataaaatatatgatata 141
              ||||||||||||||||||||
Sbjct: 898691 tcaataaaatatatgatata 898710
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>dbj|AP006116.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT40C04, TM0199,
             complete sequence
          Length = 123325

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   taaagttcaataaaatatat 135
             ||||||||||||||||||||
Sbjct: 33105 taaagttcaataaaatatat 33086


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,308,267
Number of Sequences: 3902068
Number of extensions: 5308267
Number of successful extensions: 110617
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 110250
Number of HSP's gapped (non-prelim): 368
length of query: 430
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 408
effective length of database: 17,147,199,772
effective search space: 6996057506976
effective search space used: 6996057506976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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