>PME3_PHAVU (Q43111) Pectinesterase-3 precursor (EC 3.1.1.11) (Pectin|
           methylesterase 3) (PE 3)
          Length = 581

 Score = 37.0 bits (84), Expect = 0.019
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = -3

Query: 420 NSNKSMTAFFGMYKNWGPGADAVHGVPWARELDYFT---ARPFLGKSFVNGFHWL 265
           N     T F+  Y+N GPGAD    V WA      T   A  F  +SF+ G  WL
Sbjct: 516 NVEPPTTIFYAEYQNSGPGADVSQRVKWAGYKPTITDRNAEEFTVQSFIQGPEWL 570

>TSSP_HUMAN (Q9NQE7) Thymus-specific serine protease precursor (EC 3.4.-.-)|
          Length = 514

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = -3

Query: 390 GMYKNWGPGADAVHGVPWARE-LDYFTA---RPFLGKSFVNGFHWLTPD 256
           G+  + GPGA A+  V W  + LD F     R FL + +VN  HW+  D
Sbjct: 44  GLGLSLGPGAAALPKVGWLEQLLDPFNVSDRRSFLQRYWVNDQHWVGQD 92

>PME1_ARATH (Q43867) Pectinesterase-1 precursor (EC 3.1.1.11) (Pectin|
           methylesterase 1) (PE 1)
          Length = 586

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = -3

Query: 393 FGMYKNWGPGADAVHGVPWARELDYFT---ARPFLGKSFVNGFHWL 265
           +G YKN GPG+D    V WA      +   A  F   + ++G  W+
Sbjct: 531 YGEYKNTGPGSDVTQRVKWAGYKPVMSDAEAAKFTVATLLHGADWI 576

>PME_BRANA (P41510) Probable pectinesterase precursor (EC 3.1.1.11) (Pectin|
           methylesterase) (PE)
          Length = 584

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
 Frame = -3

Query: 405 MTAFFGMYKNWGPGADAVHGVPWAR------ELDYFTARPFLGKSFVNGFHWLTP 259
           +TA +  + N GPGA+    VPWA+      E++ FT             +WLTP
Sbjct: 526 LTATYVEFNNRGPGANTAARVPWAKMAKSAAEVERFTVA-----------NWLTP 569

>NFS1_YEAST (P25374) Cysteine desulfurase, mitochondrial precursor (EC 2.8.1.7)|
           (tRNA-splicing protein SPL1)
          Length = 497

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 214 DKIYIHTSTSQAYYKNSIDIKEL 146
           +KIY HT  +QAY K  ID+ E+
Sbjct: 266 NKIYFHTDAAQAYGKIHIDVNEM 288

>NK1R_RANCA (Q98982) Substance-P receptor (SPR) (NK-1 receptor) (NK-1R)|
           (Tachykinin receptor 1)
          Length = 408

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +1

Query: 94  NYTGKFKSMKNEQLYTVLVPLYLCYSCSMLVM-CWYECISCLLNMWCVKLPG-SSDIWSE 267
           N+    ++ K EQ+Y VLV   L Y   +LV+ C Y  I   + +W  ++PG SSD + E
Sbjct: 184 NWPDSEENRKYEQVYQVLV-FCLIYILPLLVIGCAYTFIG--MTLWASEIPGDSSDRYHE 240

Query: 268 PV 273
            V
Sbjct: 241 QV 242

>LNT_HELPY (O24982) Apolipoprotein N-acyltransferase (EC 2.3.1.-) (ALP|
           N-acyltransferase)
          Length = 425

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -3

Query: 330 ELDYFTARPFLGKSFVN--GFHWLTPD 256
           E  YF    FLG SF++  GF WL PD
Sbjct: 111 ENPYFRLLSFLGSSFIHPFGFDWLVPD 137

>LNT_HELPJ (Q9ZMQ0) Apolipoprotein N-acyltransferase (EC 2.3.1.-) (ALP|
           N-acyltransferase)
          Length = 425

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -3

Query: 330 ELDYFTARPFLGKSFVN--GFHWLTPD 256
           E  YF    FLG SF++  GF WL PD
Sbjct: 111 ENPYFRLLSFLGSSFIHPFGFDWLVPD 137

>PME_BRACM (Q42608) Pectinesterase (EC 3.1.1.11) (Pectin methylesterase) (PE)|
           (Fragment)
          Length = 571

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
 Frame = -3

Query: 405 MTAFFGMYKNWGPGADAVHGVPWAR------ELDYFTARPFLGKSFVNGFHWLTP 259
           +TA +  + N GPGA+    VPWA+      E++ FT             +WLTP
Sbjct: 513 LTATYVEFNNRGPGANPAARVPWAKMAKSAAEVERFTVA-----------NWLTP 556

>RIR1_NEUCR (Q9UW15) Ribonucleoside-diphosphate reductase large chain (EC|
           1.17.4.1) (Ribonucleotide reductase large subunit)
          Length = 929

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +1

Query: 184 VMCWYECISCLLNMWCVKLPGSSDIWSEPVESVDEALAEEWAGGEVVELPRPWHAV 351
           +MC +EC            PG +D++ +  E++ E   +E  G + V+  + W+A+
Sbjct: 350 LMCPHEC------------PGLADVYGDEFEALYEKYEKEGKGRKTVKAQKLWYAI 393

>GDC_MOUSE (Q8C0K5) Grave disease carrier protein homolog (GDC) (Mitochondrial|
           solute carrier protein homolog) (Solute carrier family
           25 member 16)
          Length = 332

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 298 RQELRQRIPLAHSRCLNSQAVSRTTYSADKIYIH 197
           R+ L + + L + RC+ SQAV+ TTY   K + H
Sbjct: 297 RRGLYRGLSLNYIRCIPSQAVAFTTYELMKQFFH 330

>GDC_HUMAN (P16260) Grave disease carrier protein (GDC) (Grave disease|
           autoantigen) (GDA) (Mitochondrial solute carrier protein
           homolog) (Solute carrier family 25 member 16)
          Length = 332

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 298 RQELRQRIPLAHSRCLNSQAVSRTTYSADKIYIH 197
           R+ L + + L + RC+ SQAV+ TTY   K + H
Sbjct: 297 RKGLYRGLSLNYIRCIPSQAVAFTTYELMKQFFH 330

>UPTG1_SOLTU (Q9SC19) Alpha-1,4-glucan-protein synthase [UDP-forming] 1 (EC|
           2.4.1.112) (UDP-glucose:protein transglucosylase 1)
           (UPTG 1)
          Length = 365

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = -3

Query: 396 FFGMYKNWGPGADAVHGVPWARELDYFTARPFLGKSFVNGFHWLTPDV*TPRQFHAPHIQ 217
           F  +Y  +  GAD V G P       F+ R     +  +G     PD   P Q   PH +
Sbjct: 133 FNTLYDPYRDGADFVRGYP-------FSMREGAPTAVSHGLWLNIPDYDAPTQLVKPHER 185

Query: 216 QTRY 205
            TRY
Sbjct: 186 NTRY 189

>NIA2_TOBAC (P08509) Nitrate reductase [NADH] 2 (EC 1.7.1.1) (NR2)|
          Length = 904

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 16/64 (25%), Positives = 25/64 (39%)
 Frame = +1

Query: 193 WYECISCLLNMWCVKLPGSSDIWSEPVESVDEALAEEWAGGEVVELPRPWHAVHGVGAGP 372
           W E I   + +W V      + W   +  + EA+  E        +P P H    +  GP
Sbjct: 826 WAEKIPERVKVWYVVQDSIKEGWKYSIGFITEAILRE-------HIPEPSHTTLALACGP 878

Query: 373 PVLI 384
           P +I
Sbjct: 879 PPMI 882

>PGCA_MOUSE (Q61282) Aggrecan core protein precursor (Cartilage-specific|
           proteoglycan core protein) (CSPCP)
          Length = 2132

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 22/66 (33%), Positives = 29/66 (43%)
 Frame = -3

Query: 372 GPGADAVHGVPWARELDYFTARPFLGKSFVNGFHWLTPDV*TPRQFHAPHIQQTRYTFIP 193
           GPG DAV   P   E+ YFT  P     +   +   TP   +P+    P I  T    +P
Sbjct: 715 GPGVDAVPLEPKTTEVPYFTTEPRKQTEWEPAY---TPVGTSPQ----PGIPPTWLPTLP 767

Query: 192 AHHKHT 175
           A  +HT
Sbjct: 768 AAEEHT 773

>NIA_LYCES (P17570) Nitrate reductase [NADH] (EC 1.7.1.1) (NR)|
          Length = 911

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = +1

Query: 217  LNMWCVKLPGSSDIWSEPVESVDEALAEEWAGGEVVE------LPRPWHAVHGVGAGPPV 378
            L+ W  ++P    +W    ES+ +    +++ G V E      +P P H    +  GPP 
Sbjct: 830  LDAWAEQVPNRVKVWYVVQESITQGW--KYSTGFVTESILREHIPEPSHTTLALACGPPP 887

Query: 379  LI 384
            +I
Sbjct: 888  MI 889

>GDC_BOVIN (Q01888) Grave disease carrier protein (GDC) (Mitochondrial solute|
           carrier protein homolog) (Solute carrier family 25
           member 16)
          Length = 330

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 298 RQELRQRIPLAHSRCLNSQAVSRTTYSADKIYIH 197
           R+ L + + L + RC+ SQAV+ TTY   K + H
Sbjct: 295 RKGLYRGLSLNYIRCVPSQAVAFTTYELMKQFFH 328

>RIR1_DROME (P48591) Ribonucleoside-diphosphate reductase large subunit (EC|
           1.17.4.1) (Ribonucleoside-diphosphate reductase M1
           subunit) (Ribonucleotide reductase large chain)
          Length = 812

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
 Frame = +1

Query: 79  FLVTSNYTGKFKSMKNEQLYTVLVP-LYLCY---SCSMLVMCWYECISCLLNMWCVKLPG 246
           FL     TGK ++   +  Y + +P L++     +    +MC ++C            PG
Sbjct: 322 FLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMCPHKC------------PG 369

Query: 247 SSDIWSEPVESVDEALAEEWAGGEVVELPRPWHAV 351
             D+W +  E + E   +E      V+    W A+
Sbjct: 370 LHDVWGDEFEKLYEKYEQEGRANRTVKAQSLWFAI 404

>NIA_PETHY (P36859) Nitrate reductase [NADH] (EC 1.7.1.1) (NR)|
          Length = 909

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = +1

Query: 217  LNMWCVKLPGSSDIWSEPVESVDEALAEEWAGGEVVE------LPRPWHAVHGVGAGPPV 378
            L+ W VKLP    +W    +S+ E    +++ G + E      +P P      +  GPP 
Sbjct: 828  LDSWAVKLPERVKVWYVVQDSIKEGW--KYSTGFITEAVLREHIPLPSQTTLALACGPPP 885

Query: 379  LI 384
            +I
Sbjct: 886  MI 887

>FHUE_ECOLI (P16869) FhuE receptor precursor (Outer-membrane receptor for|
           Fe(III)-coprogen, Fe(III)-ferrioxamine B and
           Fe(III)-rhodotrulic acid)
          Length = 729

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 414 NKSMTAFFGMYKNWGPGADAVHGVPW 337
           NK+     G Y N+GPG D V G  W
Sbjct: 347 NKADGMLVGPYSNYGPGFDYVGGTGW 372

>NIA1_TOBAC (P11605) Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1)|
          Length = 904

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/64 (25%), Positives = 25/64 (39%)
 Frame = +1

Query: 193 WYECISCLLNMWCVKLPGSSDIWSEPVESVDEALAEEWAGGEVVELPRPWHAVHGVGAGP 372
           W E I   + +W V      + W   +  + EA+  E        +P P H    +  GP
Sbjct: 826 WAEKIPERVKVWYVVQDSIKEGWKYSLGFISEAILRE-------HIPEPSHTTLALACGP 878

Query: 373 PVLI 384
           P +I
Sbjct: 879 PPMI 882

>NFS1_CANMA (P87187) Cysteine desulfurase, mitochondrial precursor (EC 2.8.1.7)|
           (tRNA-splicing protein SPL1)
          Length = 484

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 214 DKIYIHTSTSQAYYKNSIDIKEL 146
           +KI+ HT  +QAY K  ID+ E+
Sbjct: 251 NKIFFHTDAAQAYGKIPIDVNEM 273


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,086,236
Number of Sequences: 219361
Number of extensions: 1185365
Number of successful extensions: 3971
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3970
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)