ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast55b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ARNT_HUMAN (P27540) Aryl hydrocarbon receptor nuclear translocat... 33 0.20
2TAGB_DICDI (P54683) Prestalk-specific protein tagB precursor (EC... 30 1.7
3FZO1_CAEEL (Q23424) Transmembrane GTPase fzo-1 (EC 3.6.5.-) 30 2.9
4CORIN_MOUSE (Q9Z319) Atrial natriuteric peptide-converting enzym... 30 2.9
5ARNT_RABIT (O02748) Aryl hydrocarbon receptor nuclear translocat... 29 3.7
6FCL2_ORYSA (Q67WR5) Putative GDP-L-fucose synthase 2 (EC 1.1.1.2... 28 8.3

>ARNT_HUMAN (P27540) Aryl hydrocarbon receptor nuclear translocator (ARNT|
           protein) (Dioxin receptor, nuclear translocator)
           (Hypoxia-inducible factor 1 beta) (HIF-1 beta)
          Length = 789

 Score = 33.5 bits (75), Expect = 0.20
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 383 SPSVTASPSWLPTSASGYSATRIAXXXXPKASKE*TGVQYYE 258
           +P+  A+P+W PT+ SG+SA ++A     K      GV  ++
Sbjct: 630 NPTQGATPTWTPTTRSGFSAQQVATQATAKTRTSQFGVGSFQ 671



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>TAGB_DICDI (P54683) Prestalk-specific protein tagB precursor (EC 3.4.21.-)|
          Length = 1905

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +2

Query: 98   IAETDGKGDNKKE*HYTNNQGNFSSSKTLDNYVAIALSVGGLTKKKARSRPPK 256
            +  ++GK D+    +  NN GN   S+ LD    +A S  GLTK++ + +  K
Sbjct: 1434 VENSNGKQDDPN--NNNNNIGNLDYSEQLDGVSTVADSTVGLTKRELKKQKEK 1484



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>FZO1_CAEEL (Q23424) Transmembrane GTPase fzo-1 (EC 3.6.5.-)|
          Length = 774

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 44  KELEDPDLYIQQSNWDVRIAETDGKGDNKKE 136
           K+L  P+++I  + WD   AET+   D KK+
Sbjct: 258 KKLSKPNVFILNNRWDASAAETENIEDVKKQ 288



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>CORIN_MOUSE (Q9Z319) Atrial natriuteric peptide-converting enzyme (EC 3.4.21.-)|
           (pro-ANP-converting enzyme) (Corin) (Low density
           lipoprotein receptor-related protein 4)
          Length = 1113

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 19/93 (20%), Positives = 39/93 (41%)
 Frame = -3

Query: 395 GSPRSPSVTASPSWLPTSASGYSATRIAXXXXPKASKE*TGVQYYEILVACF*LSSWLIP 216
           G+P  P   ++P+W P + S    +          +     +  Y   +A       L+P
Sbjct: 175 GAPSLPPSQSTPAWTPRAPSPEDQSHRNTSTCMNITHSQCQILPYHSTLAP------LLP 228

Query: 215 LLTELWPRSCREFYYY*NYLGCWCNVILFCCRL 117
           ++  +      +F+ Y + L C+ +++LF C L
Sbjct: 229 IVKNMDMEKFLKFFTYLHRLSCYQHILLFGCSL 261



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>ARNT_RABIT (O02748) Aryl hydrocarbon receptor nuclear translocator (ARNT|
           protein) (Dioxin receptor, nuclear translocator)
           (Hypoxia-inducible factor 1 beta) (HIF-1 beta)
          Length = 790

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -3

Query: 383 SPSVTASPSWLPTSASGYSATRIAXXXXPKASKE*TGVQYYE 258
           +P+   +P+W P++  G+SA ++A     K+     GV  ++
Sbjct: 631 NPTQGTAPTWTPSTRPGFSAQQVASQATTKSRSSQFGVGNFQ 672



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>FCL2_ORYSA (Q67WR5) Putative GDP-L-fucose synthase 2 (EC 1.1.1.271)|
           (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase
           2)
          Length = 347

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = -2

Query: 399 GWEPKIALRDGL 364
           GWEP++ALRDG+
Sbjct: 317 GWEPRVALRDGI 328


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,908,839
Number of Sequences: 219361
Number of extensions: 841870
Number of successful extensions: 2348
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2347
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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