ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast55b04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY677178.1| Hordeum vulgare UDP-D-glucuronate decarboxylase (... 587 e-164
2gb|AC135929.2| Oryza sativa (japonica cultivar-group) chromosome... 90 7e-15
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 90 7e-15
4dbj|AK073358.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
5gb|AY106346.1| Zea mays PCO069392 mRNA sequence 88 3e-14
6dbj|AK061857.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 6e-12
7gb|AF251077.1|AF251077 Oryza sativa dTDP-glucose 4-6-dehydratase... 80 6e-12
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 80 6e-12
9dbj|AB167396.1| Oryza sativa (japonica cultivar-group) UXS-2 mRN... 80 6e-12
10dbj|AP003535.2| Oryza sativa (japonica cultivar-group) genomic D... 80 6e-12
11dbj|AK101168.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 6e-12
12dbj|AB182636.1| Oryza sativa (japonica cultivar-group) UXS-5 mRN... 70 6e-09
13dbj|AK122156.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
14gb|BT017677.1| Zea mays clone EL01N0443A11.c mRNA sequence 64 4e-07
15gb|AY105704.1| Zea mays PCO089743 mRNA sequence 64 4e-07
16gb|AY677179.1| Hordeum vulgare UDP-D-glucuronate decarboxylase (... 52 0.001
17gb|AC121499.9| Mus musculus chromosome 9, clone RP23-269E5, comp... 42 1.4
18emb|AL033406.1|SPCC5E4 S.pombe chromosome III cosmid c5E4 42 1.4
19ref|NM_001022896.1| Schizosaccharomyces pombe 972h- hypothetical... 42 1.4
20dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
21dbj|AB183706.1| Oryza sativa (japonica cultivar-group) UXS-6 mRN... 42 1.4
22dbj|AP006268.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
23dbj|AP004343.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
24dbj|AK103728.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
25dbj|AK099614.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
26gb|M36179.1|YSPCUT1 Schizosaccharomyces pombe cut1+ gene, comple... 42 1.4
27gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 5.6
28gb|AF017104.1| Homo sapiens chromosome 7 common fragile site, co... 40 5.6
29gb|AC146122.2| Pan troglodytes BAC clone RP43-23C4 from 7, compl... 40 5.6
30ref|XM_723582.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 5.6
31gb|AC004917.2| Homo sapiens PAC clone RP5-892G19 from 7, complet... 40 5.6
32emb|AL662876.23| Mouse DNA sequence from clone RP23-288K19 on ch... 40 5.6
33dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 5.6
34gb|DP000062.1| Sus scrofa target 117 genomic scaffold 40 5.6
35gb|AC058791.4| Homo sapiens chromosome 7 clone RP11-138A9, compl... 40 5.6
36gb|AF385333.1|AF385333 Vanessa cardui long wavelength-sensitive ... 40 5.6
37gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 5.6
38gb|AC005520.2|AC005520 Homo sapiens PAC clone RP5-1021I20 from 1... 40 5.6
39gb|AC026722.4|AC026722 Homo sapiens chromosome 5 clone CTD-2203N... 40 5.6
40dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.6
41gb|AC007263.4|AC007263 Homo sapiens chromosome 14 clone RP11-79J... 40 5.6
42gb|AC016831.1|AC016831 Homo sapiens clone RP11-36B6 from 7q31, c... 40 5.6
43gb|AY105324.1| Zea mays PCO143177 mRNA sequence 40 5.6
44emb|AL157736.3|CNS01RG3 Human chromosome 14 DNA sequence Partial... 40 5.6
45gb|AY740907.1| Nymphalis antiopa long wavelength-sensitive rhodo... 40 5.6
46emb|AJ871581.1| Streptomyces achromogenes subsp. rubradiris comp... 40 5.6
47emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1... 40 5.6
48emb|AL356805.5|CNS05TDN Human chromosome 14 DNA sequence BAC R-3... 40 5.6 
>gb|AY677178.1| Hordeum vulgare UDP-D-glucuronate decarboxylase (UXS2) mRNA, complete
            cds
          Length = 1380

 Score =  587 bits (296), Expect = e-164
 Identities = 306/308 (99%), Gaps = 1/308 (0%)
 Strand = Plus / Minus

                                                                        
Query: 109  tgacggaaaaggcgacaacaaaaaagaataacattacaccaacaaccaaggtaatttcag 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1380 tgacggaaaaggcgacaacaaaaaagaataacattacaccaacaaccaaggtaatttcag 1321

                                                                        
Query: 169  tagtagtaaaactctcgacaactacgtggccatagctctgtcagtagggggattaaccaa 228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1320 tagtagtaaaactctcgacaactacgtggccatagctctgtcagtagggggattaaccaa 1261

                                                                        
Query: 229  gaagaaagctagaagcaggccaccaaaatttcatagtattgtactccggtctactcttta 288
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1260 gaagcaagctagaagcaggccaccaaaatttcatagtattgtactccggtctactcttta 1201

                                                                        
Query: 289  ctggccttcggtggcggtggcggcgctatcctggtcgccgaatatccgcttgcggaagtc 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1200 ctggccttcggtggcggtggcggcgctatcctggtcgccgaatatccgcttgcggaagtc 1141

                                                                        
Query: 349  ggtaaccatgagggggaggccgtcacggagggcgatcttgggctcccaccc-agttgctc 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1140 ggtaaccatgagggggaggccgtcacggagggcgatcttgggctcccacccgagttgctc 1081

                    
Query: 408  cttggcct 415
            ||||||||
Sbjct: 1080 cttggcct 1073
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>gb|AC135929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0692D12,
              complete sequence
          Length = 164064

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 57/61 (93%)
 Strand = Plus / Plus

                                                                          
Query: 1      gagagaacatgtaatttgtaccatataactctatcatctcaacaaagaattagaagatcc 60
              ||||||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||
Sbjct: 143456 gagagaacatgtaatttataccatataatgctatcatctcaacaaagaatcagaagatcc 143515

               
Query: 61     a 61
              |
Sbjct: 143516 a 143516



 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 92/111 (82%)
 Strand = Plus / Plus

                                                                          
Query: 290    tggccttcggtggcggtggcggcgctatcctggtcgccgaatatccgcttgcggaagtcg 349
              |||||| ||||||  ||||||| ||| || ||||| ||||| || |||||||||||||||
Sbjct: 143772 tggcctccggtggttgtggcggtgctgtcttggtcaccgaaaatgcgcttgcggaagtcg 143831

                                                                 
Query: 350    gtaaccatgagggggaggccgtcacggagggcgatcttgggctcccaccca 400
              || ||||||||||| || || |   |||| | |||||| ||||||||||||
Sbjct: 143832 gtgaccatgaggggaagacccttgtggagagggatctttggctcccaccca 143882
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 57/61 (93%)
 Strand = Plus / Plus

                                                                            
Query: 1        gagagaacatgtaatttgtaccatataactctatcatctcaacaaagaattagaagatcc 60
                ||||||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||
Sbjct: 17199321 gagagaacatgtaatttataccatataatgctatcatctcaacaaagaatcagaagatcc 17199380

                 
Query: 61       a 61
                |
Sbjct: 17199381 a 17199381



 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 92/111 (82%)
 Strand = Plus / Plus

                                                                            
Query: 290      tggccttcggtggcggtggcggcgctatcctggtcgccgaatatccgcttgcggaagtcg 349
                |||||| ||||||  ||||||| ||| || ||||| ||||| || |||||||||||||||
Sbjct: 17199637 tggcctccggtggttgtggcggtgctgtcttggtcaccgaaaatgcgcttgcggaagtcg 17199696

                                                                   
Query: 350      gtaaccatgagggggaggccgtcacggagggcgatcttgggctcccaccca 400
                || ||||||||||| || || |   |||| | |||||| ||||||||||||
Sbjct: 17199697 gtgaccatgaggggaagacccttgtggagagggatctttggctcccaccca 17199747
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>dbj|AK073358.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028H24, full
            insert sequence
          Length = 1667

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 56/60 (93%)
 Strand = Plus / Plus

                                                                        
Query: 1    gagagaacatgtaatttgtaccatataactctatcatctcaacaaagaattagaagatcc 60
            ||||||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||
Sbjct: 1608 gagagaacatgtaatttataccatataatgctatcatctcaacaaagaatcagaagatcc 1667
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>gb|AY106346.1| Zea mays PCO069392 mRNA sequence
          Length = 1708

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                        
Query: 320  tggtcgccgaatatccgcttgcggaagtcggtaaccatgagggggaggccgtcacggagg 379
            ||||||||||| || ||||||||||||||||  ||||||||||| ||||| ||||| |||
Sbjct: 1359 tggtcgccgaagatgcgcttgcggaagtcggagaccatgaggggaaggccctcacgcagg 1300

                                
Query: 380  gcgatcttgggctcccaccc 399
            | |||||| |||||||||||
Sbjct: 1299 gggatcttcggctcccaccc 1280



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 37   tctcaacaaagaattagaagatccagatttat 68
            ||||||||||||||||||  |||||| |||||
Sbjct: 1663 tctcaacaaagaattagatcatccaggtttat 1632
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>dbj|AK061857.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G06, full
           insert sequence
          Length = 1057

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 70/80 (87%)
 Strand = Plus / Minus

                                                                       
Query: 317 tcctggtcgccgaatatccgcttgcggaagtcggtaaccatgagggggaggccgtcacgg 376
           ||||||||||| || || || |||||||||||||||||||||||||| ||||| ||||| 
Sbjct: 696 tcctggtcgccaaagatgcgtttgcggaagtcggtaaccatgaggggaaggccctcacgc 637

                               
Query: 377 agggcgatcttgggctccca 396
           ||||  | ||||||||||||
Sbjct: 636 aggggaaccttgggctccca 617
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>gb|AF251077.1|AF251077 Oryza sativa dTDP-glucose 4-6-dehydratase-like protein mRNA,
           partial cds
          Length = 773

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 70/80 (87%)
 Strand = Plus / Minus

                                                                       
Query: 317 tcctggtcgccgaatatccgcttgcggaagtcggtaaccatgagggggaggccgtcacgg 376
           ||||||||||| || || || |||||||||||||||||||||||||| ||||| ||||| 
Sbjct: 691 tcctggtcgccaaagatgcgtttgcggaagtcggtaaccatgaggggaaggccctcacgc 632

                               
Query: 377 agggcgatcttgggctccca 396
           ||||  | ||||||||||||
Sbjct: 631 aggggaaccttgggctccca 612
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 70/80 (87%)
 Strand = Plus / Plus

                                                                            
Query: 317      tcctggtcgccgaatatccgcttgcggaagtcggtaaccatgagggggaggccgtcacgg 376
                ||||||||||| || || || |||||||||||||||||||||||||| ||||| ||||| 
Sbjct: 11890142 tcctggtcgccaaagatgcgtttgcggaagtcggtaaccatgaggggaaggccctcacgc 11890201

                                    
Query: 377      agggcgatcttgggctccca 396
                ||||  | ||||||||||||
Sbjct: 11890202 aggggaaccttgggctccca 11890221
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>dbj|AB167396.1| Oryza sativa (japonica cultivar-group) UXS-2 mRNA for UDP-glucuronic
            acid decarboxylase, complete cds
          Length = 1336

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 70/80 (87%)
 Strand = Plus / Minus

                                                                        
Query: 317  tcctggtcgccgaatatccgcttgcggaagtcggtaaccatgagggggaggccgtcacgg 376
            ||||||||||| || || || |||||||||||||||||||||||||| ||||| ||||| 
Sbjct: 1294 tcctggtcgccaaagatgcgtttgcggaagtcggtaaccatgaggggaaggccctcacgc 1235

                                
Query: 377  agggcgatcttgggctccca 396
            ||||  | ||||||||||||
Sbjct: 1234 aggggaaccttgggctccca 1215
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>dbj|AP003535.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1012D10
          Length = 168267

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 70/80 (87%)
 Strand = Plus / Plus

                                                                          
Query: 317    tcctggtcgccgaatatccgcttgcggaagtcggtaaccatgagggggaggccgtcacgg 376
              ||||||||||| || || || |||||||||||||||||||||||||| ||||| ||||| 
Sbjct: 102427 tcctggtcgccaaagatgcgtttgcggaagtcggtaaccatgaggggaaggccctcacgc 102486

                                  
Query: 377    agggcgatcttgggctccca 396
              ||||  | ||||||||||||
Sbjct: 102487 aggggaaccttgggctccca 102506
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>dbj|AK101168.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028I19, full
            insert sequence
          Length = 1820

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 70/80 (87%)
 Strand = Plus / Minus

                                                                        
Query: 317  tcctggtcgccgaatatccgcttgcggaagtcggtaaccatgagggggaggccgtcacgg 376
            ||||||||||| || || || |||||||||||||||||||||||||| ||||| ||||| 
Sbjct: 1421 tcctggtcgccaaagatgcgtttgcggaagtcggtaaccatgaggggaaggccctcacgc 1362

                                
Query: 377  agggcgatcttgggctccca 396
            ||||  | ||||||||||||
Sbjct: 1361 aggggaaccttgggctccca 1342
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>dbj|AB182636.1| Oryza sativa (japonica cultivar-group) UXS-5 mRNA for UDP-glucuronic
            acid decarboxylase, complete cds
          Length = 1555

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 92/111 (82%)
 Strand = Plus / Minus

                                                                        
Query: 290  tggccttcggtggcggtggcggcgctatcctggtcgccgaatatccgcttgcggaagtcg 349
            |||||| ||||||  ||||||| ||| || ||||| ||||| || |||||||||||||||
Sbjct: 1417 tggcctccggtggttgtggcggtgctgtcttggtcaccgaaaatgcgcttgcggaagtcg 1358

                                                               
Query: 350  gtaaccatgagggggaggccgtcacggagggcgatcttgggctcccaccca 400
            || ||||||||||| || || |   |||| | |||||| ||||||||||||
Sbjct: 1357 gtgaccatgaggggaagacccttgtggagagggatctttggctcccaccca 1307
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>dbj|AK122156.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145O13, full
            insert sequence
          Length = 1734

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 92/111 (82%)
 Strand = Plus / Minus

                                                                        
Query: 290  tggccttcggtggcggtggcggcgctatcctggtcgccgaatatccgcttgcggaagtcg 349
            |||||| ||||||  ||||||| ||| || ||||| ||||| || |||||||||||||||
Sbjct: 1491 tggcctccggtggttgtggcggtgctgtcttggtcaccgaaaatgcgcttgcggaagtcg 1432

                                                               
Query: 350  gtaaccatgagggggaggccgtcacggagggcgatcttgggctcccaccca 400
            || ||||||||||| || || |   |||| | |||||| ||||||||||||
Sbjct: 1431 gtgaccatgaggggaagacccttgtggagagggatctttggctcccaccca 1381
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>gb|BT017677.1| Zea mays clone EL01N0443A11.c mRNA sequence
          Length = 1211

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                       
Query: 317 tcctggtcgccgaatatccgcttgcggaagtcggtaaccatgagggggaggccgtcacgg 376
           |||||||| ||||| || || ||||||||||| || |||||| |||| ||||| ||||||
Sbjct: 951 tcctggtccccgaagatacgtttgcggaagtcagtgaccatgcggggaaggccctcacgg 892

                               
Query: 377 agggcgatcttgggctccca 396
           ||||  | ||||||||||||
Sbjct: 891 aggggaaccttgggctccca 872
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>gb|AY105704.1| Zea mays PCO089743 mRNA sequence
          Length = 888

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                       
Query: 317 tcctggtcgccgaatatccgcttgcggaagtcggtaaccatgagggggaggccgtcacgg 376
           |||||||| ||||| || || ||||||||||| || |||||| |||| ||||| ||||||
Sbjct: 582 tcctggtccccgaagatacgtttgcggaagtcagtgaccatgcggggaaggccctcacgg 523

                               
Query: 377 agggcgatcttgggctccca 396
           ||||  | ||||||||||||
Sbjct: 522 aggggaaccttgggctccca 503
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>gb|AY677179.1| Hordeum vulgare UDP-D-glucuronate decarboxylase (UXS3) mRNA, complete
            cds
          Length = 1576

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 81/98 (82%), Gaps = 1/98 (1%)
 Strand = Plus / Minus

                                                                        
Query: 319  ctggtcgccgaatatccgcttgcggaagtcggtaaccatgagggggaggccgtcacggag 378
            |||||||||||| || ||  ||||||||||    |||||||| ||||||||||  |||||
Sbjct: 1308 ctggtcgccgaagatgcgggtgcggaagtcctggaccatgagcgggaggccgttccggag 1249

                                                  
Query: 379  ggcgatcttgggctcccaccc-agttgctccttggcct 415
             || | ||||||||||||||| ||  ||||||||||||
Sbjct: 1248 cgccaccttgggctcccacccgagcagctccttggcct 1211
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>gb|AC121499.9| Mus musculus chromosome 9, clone RP23-269E5, complete sequence
          Length = 212061

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 115    aaaaggcgacaacaaaaaagaataa 139
              ||||||| |||||||||||||||||
Sbjct: 148145 aaaaggcaacaacaaaaaagaataa 148121
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>emb|AL033406.1|SPCC5E4 S.pombe chromosome III cosmid c5E4
          Length = 23000

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 148   caacaaccaaggtaatttcag 168
             |||||||||||||||||||||
Sbjct: 13164 caacaaccaaggtaatttcag 13144
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>ref|NM_001022896.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPCC5E4.05c),
            partial mRNA
          Length = 1137

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 148  caacaaccaaggtaatttcag 168
            |||||||||||||||||||||
Sbjct: 1061 caacaaccaaggtaatttcag 1081
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                            
Query: 320      tggtcgccgaatatccgcttgcggaagtcggtaaccatgagggggaggccgtcacggagg 379
                ||||||||||| || || | |||||||||    |||||||| |||||||| |   |||||
Sbjct: 28443984 tggtcgccgaagatgcggtcgcggaagtcctggaccatgagcgggaggcccttgtggagg 28443925

                                 
Query: 380      gcgatcttgggctccca 396
                | |||||||||||||||
Sbjct: 28443924 gggatcttgggctccca 28443908
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>dbj|AB183706.1| Oryza sativa (japonica cultivar-group) UXS-6 mRNA for UDP-glucuronic
            acid decarboxylase, complete cds
          Length = 1498

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                        
Query: 320  tggtcgccgaatatccgcttgcggaagtcggtaaccatgagggggaggccgtcacggagg 379
            ||||||||||| || || | |||||||||    |||||||| |||||||| |   |||||
Sbjct: 1369 tggtcgccgaagatgcggtcgcggaagtcctggaccatgagcgggaggcccttgtggagg 1310

                             
Query: 380  gcgatcttgggctccca 396
            | |||||||||||||||
Sbjct: 1309 gggatcttgggctccca 1293
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>dbj|AP006268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0037D09
          Length = 140470

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                        
Query: 320  tggtcgccgaatatccgcttgcggaagtcggtaaccatgagggggaggccgtcacggagg 379
            ||||||||||| || || | |||||||||    |||||||| |||||||| |   |||||
Sbjct: 9736 tggtcgccgaagatgcggtcgcggaagtcctggaccatgagcgggaggcccttgtggagg 9677

                             
Query: 380  gcgatcttgggctccca 396
            | |||||||||||||||
Sbjct: 9676 gggatcttgggctccca 9660
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>dbj|AP004343.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0618H09
          Length = 142306

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                        
Query: 320  tggtcgccgaatatccgcttgcggaagtcggtaaccatgagggggaggccgtcacggagg 379
            ||||||||||| || || | |||||||||    |||||||| |||||||| |   |||||
Sbjct: 1525 tggtcgccgaagatgcggtcgcggaagtcctggaccatgagcgggaggcccttgtggagg 1466

                             
Query: 380  gcgatcttgggctccca 396
            | |||||||||||||||
Sbjct: 1465 gggatcttgggctccca 1449
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>dbj|AK103728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138E11, full
            insert sequence
          Length = 2031

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                        
Query: 320  tggtcgccgaatatccgcttgcggaagtcggtaaccatgagggggaggccgtcacggagg 379
            ||||||||||| || || | |||||||||    |||||||| |||||||| |   |||||
Sbjct: 1677 tggtcgccgaagatgcggtcgcggaagtcctggaccatgagcgggaggcccttgtggagg 1618

                             
Query: 380  gcgatcttgggctccca 396
            | |||||||||||||||
Sbjct: 1617 gggatcttgggctccca 1601
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>dbj|AK099614.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050E02, full
            insert sequence
          Length = 1965

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                        
Query: 320  tggtcgccgaatatccgcttgcggaagtcggtaaccatgagggggaggccgtcacggagg 379
            ||||||||||| || || | |||||||||    |||||||| |||||||| |   |||||
Sbjct: 1508 tggtcgccgaagatgcggtcgcggaagtcctggaccatgagcgggaggcccttgtggagg 1449

                             
Query: 380  gcgatcttgggctccca 396
            | |||||||||||||||
Sbjct: 1448 gggatcttgggctccca 1432
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>gb|M36179.1|YSPCUT1 Schizosaccharomyces pombe cut1+ gene, complete cds
          Length = 7694

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 148  caacaaccaaggtaatttcag 168
            |||||||||||||||||||||
Sbjct: 7637 caacaaccaaggtaatttcag 7617
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 181     tctcgacaactacgtggcca 200
               ||||||||||||||||||||
Sbjct: 1050585 tctcgacaactacgtggcca 1050604
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>gb|AF017104.1| Homo sapiens chromosome 7 common fragile site, complete sequence
          Length = 161155

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 394   ccacccagttgctccttggc 413
             ||||||||||||||||||||
Sbjct: 94783 ccacccagttgctccttggc 94764
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>gb|AC146122.2| Pan troglodytes BAC clone RP43-23C4 from 7, complete sequence
          Length = 143388

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    tccagatttatatatccaac 77
             ||||||||||||||||||||
Sbjct: 32505 tccagatttatatatccaac 32486
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>ref|XM_723582.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY07718)
            partial mRNA
          Length = 2820

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 318  cctggtcgccgaatatccgc 337
            ||||||||||||||||||||
Sbjct: 2200 cctggtcgccgaatatccgc 2181
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>gb|AC004917.2| Homo sapiens PAC clone RP5-892G19 from 7, complete sequence
          Length = 110233

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    tccagatttatatatccaac 77
             ||||||||||||||||||||
Sbjct: 84204 tccagatttatatatccaac 84185
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>emb|AL662876.23| Mouse DNA sequence from clone RP23-288K19 on chromosome 11 Contains the
              5' end of a novel gene, a pseudogene similar to human
              polymerase (RNA) II (DNA directed) polypeptide D POLR2D,
              two novel genes, the Xbp1 gene for X-box binding protein 1,
              the gene for a novel ankyrin repeat containing protein and
              three CpG islands, complete sequence
          Length = 232225

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    acattacaccaacaaccaag 158
              ||||||||||||||||||||
Sbjct: 116003 acattacaccaacaaccaag 115984
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 297     cggtggcggtggcggcgcta 316
               ||||||||||||||||||||
Sbjct: 4125852 cggtggcggtggcggcgcta 4125871
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>gb|DP000062.1| Sus scrofa target 117 genomic scaffold
          Length = 605739

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 128   aaaaaagaataacattacaccaac 151
             ||||||||||||||||||| ||||
Sbjct: 31982 aaaaaagaataacattacagcaac 32005
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>gb|AC058791.4| Homo sapiens chromosome 7 clone RP11-138A9, complete sequence
          Length = 164026

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 394    ccacccagttgctccttggc 413
              ||||||||||||||||||||
Sbjct: 123204 ccacccagttgctccttggc 123223
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>gb|AF385333.1|AF385333 Vanessa cardui long wavelength-sensitive opsin mRNA, partial cds
          Length = 1283

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 294 cttcggtggcggtggcggcg 313
           ||||||||||||||||||||
Sbjct: 985 cttcggtggcggtggcggcg 966
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 318     cctggtcgccgaatatccgc 337
               ||||||||||||||||||||
Sbjct: 3261309 cctggtcgccgaatatccgc 3261290
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>gb|AC005520.2|AC005520 Homo sapiens PAC clone RP5-1021I20 from 14q24.3, complete sequence
          Length = 151123

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   acaacaaaaaagaataacat 142
             ||||||||||||||||||||
Sbjct: 51919 acaacaaaaaagaataacat 51938
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>gb|AC026722.4|AC026722 Homo sapiens chromosome 5 clone CTD-2203N22, complete sequence
          Length = 150162

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    gacaacaaaaaagaataaca 141
              ||||||||||||||||||||
Sbjct: 130990 gacaacaaaaaagaataaca 130971
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 295     ttcggtggcggtggcggcgc 314
               ||||||||||||||||||||
Sbjct: 2527622 ttcggtggcggtggcggcgc 2527641
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>gb|AC007263.4|AC007263 Homo sapiens chromosome 14 clone RP11-79J20 containing gene for
             checkpoint supporessor 1 (CHES1) gene, partial cds,
             complete sequence
          Length = 167390

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   gcgacaacaaaaaagaataa 139
             ||||||||||||||||||||
Sbjct: 43081 gcgacaacaaaaaagaataa 43062
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>gb|AC016831.1|AC016831 Homo sapiens clone RP11-36B6 from 7q31, complete sequence
          Length = 192768

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 394    ccacccagttgctccttggc 413
              ||||||||||||||||||||
Sbjct: 176215 ccacccagttgctccttggc 176196
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>gb|AY105324.1| Zea mays PCO143177 mRNA sequence
          Length = 1439

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 376 gagggcgatcttgggctcccaccc 399
           ||||||||||||||||| ||||||
Sbjct: 520 gagggcgatcttgggcttccaccc 543
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>emb|AL157736.3|CNS01RG3 Human chromosome 14 DNA sequence Partial sequence from BAC R-945C20 of
             library RPCI-11 from chromosome 14 of Homo sapiens
             (Human), complete sequence
          Length = 200542

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   gcgacaacaaaaaagaataa 139
             ||||||||||||||||||||
Sbjct: 52161 gcgacaacaaaaaagaataa 52142
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>gb|AY740907.1| Nymphalis antiopa long wavelength-sensitive rhodopsin mRNA, complete
            cds
          Length = 1612

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  cttcggtggcggtggcggcg 313
            ||||||||||||||||||||
Sbjct: 1147 cttcggtggcggtggcggcg 1128
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>emb|AJ871581.1| Streptomyces achromogenes subsp. rubradiris complete rubradirin gene
             cluster, strain NRRL 3061
          Length = 105657

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 366   ggccgtcacggagggcgatcttgg 389
             ||||||||| ||||||||||||||
Sbjct: 58820 ggccgtcacagagggcgatcttgg 58797
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>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 295     ttcggtggcggtggcggcgc 314
               ||||||||||||||||||||
Sbjct: 1381040 ttcggtggcggtggcggcgc 1381021
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>emb|AL356805.5|CNS05TDN Human chromosome 14 DNA sequence BAC R-33N16 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 158838

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   gcgacaacaaaaaagaataa 139
             ||||||||||||||||||||
Sbjct: 35321 gcgacaacaaaaaagaataa 35340


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,945,101
Number of Sequences: 3902068
Number of extensions: 3945101
Number of successful extensions: 89057
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88702
Number of HSP's gapped (non-prelim): 349
length of query: 415
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 393
effective length of database: 17,147,199,772
effective search space: 6738849510396
effective search space used: 6738849510396
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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