ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast55b02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|BS000021.1| Pan troglodytes chromosome 22 clone:PTB-141K15, map 22, complete sequences Length = 183533 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 catgttttggttttctgttaca 56 |||||||||||||||||||||| Sbjct: 20511 catgttttggttttctgttaca 20532
>ref|XM_320800.2| Anopheles gambiae str. PEST ENSANGP00000014031 (ENSANGG00000011542), partial mRNA Length = 768 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Minus Query: 94 aggggggaggaacaataacaaa 115 |||||||||||||||||||||| Sbjct: 233 aggggggaggaacaataacaaa 212
>emb|AL163210.2|HS21C010 Homo sapiens chromosome 21 segment HS21C010 Length = 340000 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 catgttttggttttctgttaca 56 |||||||||||||||||||||| Sbjct: 89785 catgttttggttttctgttaca 89806
>emb|AJ010597.1|HS73M5 Homo sapiens chromosome 21 PAC RPCIP704M573Q2, complete sequence Length = 105999 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 catgttttggttttctgttaca 56 |||||||||||||||||||||| Sbjct: 54400 catgttttggttttctgttaca 54421
>emb|AL034449.1|HS111K10 Homo sapiens chromosome 21 PAC RPCIP704K10111Q2, complete sequence Length = 145656 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 catgttttggttttctgttaca 56 |||||||||||||||||||||| Sbjct: 133855 catgttttggttttctgttaca 133876
>gb|AF411927.1| Takifugu rubripes platelet-derived growth factor receptor beta 2 (PDGFRbeta2) gene, partial cds; colony stimulating factor 1 receptor 2 (CSF1R2) gene, complete cds; and enteropeptidase precursor, gene, partial cds Length = 32542 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 ttttggttttctgttacagag 59 ||||||||||||||||||||| Sbjct: 27057 ttttggttttctgttacagag 27077
>gb|AC092916.6| Homo sapiens 3 BAC RP11-615J4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 132182 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 aacaataacaaattcaaaaat 124 ||||||||||||||||||||| Sbjct: 100824 aacaataacaaattcaaaaat 100804
>gb|AC096640.2| Homo sapiens chromosome 1 clone RP11-332J14, complete sequence Length = 167346 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 tcacacacatgttttggtttt 48 ||||||||||||||||||||| Sbjct: 9476 tcacacacatgttttggtttt 9456
>gb|AC096644.2| Homo sapiens chromosome 1 clone RP11-410C4, complete sequence Length = 151900 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 tcacacacatgttttggtttt 48 ||||||||||||||||||||| Sbjct: 101879 tcacacacatgttttggtttt 101859
>gb|AC108016.5| Homo sapiens BAC clone RP13-1015A13 from 4, complete sequence Length = 162715 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Plus Query: 36 atgttttggttttctgttaca 56 ||||||||||||||||||||| Sbjct: 55939 atgttttggttttctgttaca 55959
>gb|AC164077.5| Mus musculus chromosome 3, clone RP24-352M15, complete sequence Length = 159925 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 caataacaaattcaaaaatg 125 |||||||||||||||||||| Sbjct: 58304 caataacaaattcaaaaatg 58323
>gb|BC064564.1| Homo sapiens cDNA clone IMAGE:5579339, containing frame-shift errors Length = 4221 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 caataacaaattcaaaaatg 125 |||||||||||||||||||| Sbjct: 3751 caataacaaattcaaaaatg 3732
>gb|AC091849.2| Homo sapiens chromosome 5 clone CTD-2245E15, complete sequence Length = 131371 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 caataacaaattcaaaaatg 125 |||||||||||||||||||| Sbjct: 41679 caataacaaattcaaaaatg 41660
>gb|AC126013.12| Medicago truncatula clone mth2-32e10, complete sequence Length = 116778 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 aataacaaattcaaaaatgg 126 |||||||||||||||||||| Sbjct: 29173 aataacaaattcaaaaatgg 29192
>dbj|AK123503.1| Homo sapiens cDNA FLJ41509 fis, clone BRTHA2009886 Length = 2044 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 caataacaaattcaaaaatg 125 |||||||||||||||||||| Sbjct: 1564 caataacaaattcaaaaatg 1545
>gb|AC026419.5| Homo sapiens chromosome 5 clone CTD-2113H21, complete sequence Length = 94588 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 tcacacacatgttttggttt 47 |||||||||||||||||||| Sbjct: 37265 tcacacacatgttttggttt 37284
>dbj|AB054988.2| Penaeus monodon gene for neuropeptide Pem-SGP-C1, complete cds Length = 1087 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 atgttttggttttctgttac 55 |||||||||||||||||||| Sbjct: 840 atgttttggttttctgttac 859
>ref|XM_171032.6| PREDICTED: Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein-like 2, transcript variant 1 (SDHAL2), mRNA Length = 4285 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 caataacaaattcaaaaatg 125 |||||||||||||||||||| Sbjct: 3737 caataacaaattcaaaaatg 3718
>ref|NM_001028805.2| Caenorhabditis elegans F55B12.4 (F55B12.4) mRNA, complete cds Length = 1474 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 aacaataacaaattcaaaaa 123 |||||||||||||||||||| Sbjct: 1455 aacaataacaaattcaaaaa 1436
>gb|AC024937.21| Homo sapiens 3 BAC RP11-480A16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 157198 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 caataacaaattcaaaaatg 125 |||||||||||||||||||| Sbjct: 18199 caataacaaattcaaaaatg 18218
>gb|AC079811.6| Homo sapiens BAC clone CTD-2502L6 from 2, complete sequence Length = 130618 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 cagaggcaggactgtccaaa 74 |||||||||||||||||||| Sbjct: 8068 cagaggcaggactgtccaaa 8049
>gb|AC069513.28| Homo sapiens 3 BAC RP11-171N2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174097 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 caataacaaattcaaaaatg 125 |||||||||||||||||||| Sbjct: 141026 caataacaaattcaaaaatg 141045
>emb|Z79757.1|CEF55B12 Caenorhabditis elegans Cosmid F55B12, complete sequence Length = 32251 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 aacaataacaaattcaaaaa 123 |||||||||||||||||||| Sbjct: 15492 aacaataacaaattcaaaaa 15473
>gb|BC040598.1| Homo sapiens cDNA clone IMAGE:5270493 Length = 2400 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 cagaggcaggactgtccaaa 74 |||||||||||||||||||| Sbjct: 1546 cagaggcaggactgtccaaa 1565
>gb|L14433.1| Caenorhabditis elegans cosmid C50C3, complete sequence Length = 44733 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 aataacaaattcaaaaatgg 126 |||||||||||||||||||| Sbjct: 19566 aataacaaattcaaaaatgg 19585
>gb|AY506529.1| Zea mays strain NB mitochondrion, complete genome Length = 569630 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 71 caaacaacgataactgaatcatc 93 |||||||| |||||||||||||| Sbjct: 303342 caaacaactataactgaatcatc 303320
>gb|AF064854.1| Homo sapiens map 17q24; 5.13cR from GATA41C05 repeat region, complete sequence Length = 2781 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Minus Query: 52 ttacagaggcaggactgtccaaacaac 78 |||||| || ||||||||||||||||| Sbjct: 952 ttacaggggaaggactgtccaaacaac 926
>gb|AC005365.1| Homo sapiens chromosome 16, P1 clone 79-2A (LANL), complete sequence Length = 86130 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 acacatgttttggttttct 50 ||||||||||||||||||| Sbjct: 23851 acacatgttttggttttct 23833
>ref|XM_616031.2| PREDICTED: Bos taurus similar to Carbonic anhydrase-related protein 10 (Carbonic anhydrase-related protein X) (CARP X) (CA-RP X) (LOC535917), partial mRNA Length = 553 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 52 ttacagaggcaggactgtccaaacaac 78 |||||| || ||||||||||||||||| Sbjct: 279 ttacaggggaaggactgtccaaacaac 305
>gb|AC160995.4| Mus musculus BAC clone RP23-96D5 from chromosome 13, complete sequence Length = 235237 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 acagaggcaggactgtcca 72 ||||||||||||||||||| Sbjct: 71103 acagaggcaggactgtcca 71085
>gb|AY684169.1| Homo sapiens REV3-like, catalytic subunit of DNA polymerase zeta (yeast) (REV3L) gene, complete cds Length = 188355 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 acacatgttttggttttct 50 ||||||||||||||||||| Sbjct: 129671 acacatgttttggttttct 129653
>gb|DQ490952.1| Zea mays subsp. mays genotype male-fertile NA mitochondrion, complete genome Length = 701046 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 71 caaacaacgataactgaatcatc 93 |||||||| |||||||||||||| Sbjct: 54876 caaacaactataactgaatcatc 54898
>ref|NM_020178.3| Homo sapiens carbonic anhydrase X (CA10), mRNA Length = 3210 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 52 ttacagaggcaggactgtccaaacaac 78 |||||| || ||||||||||||||||| Sbjct: 1858 ttacaggggaaggactgtccaaacaac 1884
>gb|DQ490951.1| Zea mays subsp. mays genotype CMS-S mitochondrion, complete genome Length = 569553 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 71 caaacaacgataactgaatcatc 93 |||||||| |||||||||||||| Sbjct: 526061 caaacaactataactgaatcatc 526039
>gb|AC123665.9| Mus musculus chromosome 14, clone RP23-226A4, complete sequence Length = 241576 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 tttggttttctgttacaga 58 ||||||||||||||||||| Sbjct: 148773 tttggttttctgttacaga 148791
>gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion, complete genome Length = 535825 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 71 caaacaacgataactgaatcatc 93 |||||||| |||||||||||||| Sbjct: 106165 caaacaactataactgaatcatc 106143
>gb|AC122452.4| Mus musculus BAC clone RP24-255M5 from chromosome 16, complete sequence Length = 181463 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 104 aacaataacaaattcaaaa 122 ||||||||||||||||||| Sbjct: 26399 aacaataacaaattcaaaa 26417
>ref|XM_649309.1| Entamoeba histolytica HM-1:IMSS Rho guanine nucleotide exchange factor (54.t00022) partial mRNA Length = 2091 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 104 aacaataacaaattcaaaa 122 ||||||||||||||||||| Sbjct: 1890 aacaataacaaattcaaaa 1908
>ref|XM_651877.1| Entamoeba histolytica HM-1:IMSS protein kinase (6.t00088) partial mRNA Length = 5265 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 101 aggaacaataacaaattca 119 ||||||||||||||||||| Sbjct: 2853 aggaacaataacaaattca 2871
>gb|BC020577.1| Homo sapiens carbonic anhydrase X, mRNA (cDNA clone MGC:21795 IMAGE:4181377), complete cds Length = 2473 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 52 ttacagaggcaggactgtccaaacaac 78 |||||| || ||||||||||||||||| Sbjct: 1557 ttacaggggaaggactgtccaaacaac 1583
>gb|AY358509.1| Homo sapiens clone DNA57252 CA10 (UNQ533) mRNA, complete cds Length = 2531 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 52 ttacagaggcaggactgtccaaacaac 78 |||||| || ||||||||||||||||| Sbjct: 1193 ttacaggggaaggactgtccaaacaac 1219
>gb|AC115750.9| Mus musculus chromosome 10, clone RP23-16F5, complete sequence Length = 228071 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 34 acatgttttggttttctgt 52 ||||||||||||||||||| Sbjct: 174631 acatgttttggttttctgt 174649
>emb|AL513185.12| Human DNA sequence from clone RP11-167P22 on chromosome 10 Contains the 5' end of the CBARA1 gene for calcium binding atopy-related autoantigen 1, an HMG17 pseudogene, a cytochrome c oxidase subunit VIIc (COX7C) pseudogene, a novel gene, a novel pseudogene (FLJ12684) and a CpG island, complete sequence Length = 163632 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 107 aataacaaattcaaaaatg 125 ||||||||||||||||||| Sbjct: 14071 aataacaaattcaaaaatg 14053
>emb|AL138961.17| Human DNA sequence from clone RP11-269G10 on chromosome 13q13.1-13.3 Contains a CpG island, complete sequence Length = 61010 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 28 tcacacacatgttttggttttct 50 |||||||||| |||||||||||| Sbjct: 45803 tcacacacattttttggttttct 45825
>emb|AL080317.11|HSJ1112D6 Human DNA sequence from clone RP5-1112D6 on chromosome 6q21-22.2, complete sequence Length = 135305 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 acacatgttttggttttct 50 ||||||||||||||||||| Sbjct: 99233 acacatgttttggttttct 99251
>emb|AL031073.1|HS142F18 Human DNA sequence from clone RP1-142F18 on chromosome Xq26.3-27.2 Contains the MAGEE1 gene for melanoma antigen, family E 1, a melanoma antigen, family E 1(MAGEE1) pseudogene, and a CpG island, complete sequence Length = 141672 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 28 tcacacacatgttttggttttct 50 |||||||||| |||||||||||| Sbjct: 74454 tcacacacattttttggttttct 74476
>emb|BX063724.1|CNS09LC0 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC45DA01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 869 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 132 gatgtgcaaaaaccagcag 150 ||||||||||||||||||| Sbjct: 534 gatgtgcaaaaaccagcag 516
>emb|BX063723.1|CNS09LBZ Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC45DA01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 886 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 gatgtgcaaaaaccagcag 150 ||||||||||||||||||| Sbjct: 290 gatgtgcaaaaaccagcag 308
>gb|AC010053.7| Drosophila melanogaster 3L BAC RP98-6H19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 128765 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 100 gaggaacaataacaaattcaaaa 122 |||||||||||||||| |||||| Sbjct: 38027 gaggaacaataacaaaatcaaaa 38049
>emb|BX842617.1| Neurospora crassa DNA linkage group V cosmid clone 82C3 Length = 40661 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 acacatgttttggttttct 50 ||||||||||||||||||| Sbjct: 20170 acacatgttttggttttct 20188
>gb|BC047456.1| Homo sapiens carbonic anhydrase X, mRNA (cDNA clone MGC:50971 IMAGE:5276935), complete cds Length = 2717 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 52 ttacagaggcaggactgtccaaacaac 78 |||||| || ||||||||||||||||| Sbjct: 1812 ttacaggggaaggactgtccaaacaac 1838
>gb|BC068462.1| Homo sapiens carbonic anhydrase X, mRNA (cDNA clone MGC:87062 IMAGE:5260321), complete cds Length = 3210 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 52 ttacagaggcaggactgtccaaacaac 78 |||||| || ||||||||||||||||| Sbjct: 1858 ttacaggggaaggactgtccaaacaac 1884
>emb|AL161812.1|HSM802510 Homo sapiens mRNA; cDNA DKFZp761E1416 (from clone DKFZp761E1416) Length = 2267 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 52 ttacagaggcaggactgtccaaacaac 78 |||||| || ||||||||||||||||| Sbjct: 915 ttacaggggaaggactgtccaaacaac 941
>gb|AC158752.5| Mus musculus chromosome 15, clone RP24-132H17, complete sequence Length = 159194 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 31 cacacatgttttggttttctgtt 53 ||||||||||| ||||||||||| Sbjct: 79688 cacacatgtttgggttttctgtt 79710
>ref|NM_204697.1| Gallus gallus popeye domain containing 3 (POPDC3), mRNA Length = 1778 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 106 caataacaaattcaaaaat 124 ||||||||||||||||||| Sbjct: 3 caataacaaattcaaaaat 21
>emb|CR861151.1| Pongo pygmaeus mRNA; cDNA DKFZp459M0214 (from clone DKFZp459M0214) Length = 2218 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 52 ttacagaggcaggactgtccaaacaac 78 |||||| || ||||||||||||||||| Sbjct: 1315 ttacaggggaaggactgtccaaacaac 1341
>emb|CR857484.1| Pongo pygmaeus mRNA; cDNA DKFZp459F0821 (from clone DKFZp459F0821) Length = 2285 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 52 ttacagaggcaggactgtccaaacaac 78 |||||| || ||||||||||||||||| Sbjct: 931 ttacaggggaaggactgtccaaacaac 957
>gb|AC010030.10| Drosophila melanogaster 3L BAC RP98-2C14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 200859 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 aaaaggaatgcaaatttcg 21 ||||||||||||||||||| Sbjct: 144637 aaaaggaatgcaaatttcg 144655
>emb|CR749607.1| Homo sapiens mRNA; cDNA DKFZp686I20267 (from clone DKFZp686I20267) Length = 2718 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 52 ttacagaggcaggactgtccaaacaac 78 |||||| || ||||||||||||||||| Sbjct: 1361 ttacaggggaaggactgtccaaacaac 1387
>gb|AC010033.8| Drosophila melanogaster 3L BAC RP98-3I5 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 188653 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 100 gaggaacaataacaaattcaaaa 122 |||||||||||||||| |||||| Sbjct: 164514 gaggaacaataacaaaatcaaaa 164536
>emb|CR609088.1| full-length cDNA clone CS0DI005YB09 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1568 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 52 ttacagaggcaggactgtccaaacaac 78 |||||| || ||||||||||||||||| Sbjct: 711 ttacaggggaaggactgtccaaacaac 737
>emb|CR597480.1| full-length cDNA clone CS0DI005YJ05 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1568 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 52 ttacagaggcaggactgtccaaacaac 78 |||||| || ||||||||||||||||| Sbjct: 711 ttacaggggaaggactgtccaaacaac 737
>gb|AC078856.13| Homo sapiens 3 BAC RP11-73F12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 115534 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 tgttttggttttctgttac 55 ||||||||||||||||||| Sbjct: 94237 tgttttggttttctgttac 94219
>ref|NM_168468.1| Drosophila melanogaster CG32091-RB (CG32091), mRNA Length = 2966 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 100 gaggaacaataacaaattcaaaa 122 |||||||||||||||| |||||| Sbjct: 269 gaggaacaataacaaaatcaaaa 291
>gb|AY075521.1| Drosophila melanogaster RE70153 full length cDNA Length = 2980 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 100 gaggaacaataacaaattcaaaa 122 |||||||||||||||| |||||| Sbjct: 269 gaggaacaataacaaaatcaaaa 291
>gb|AC093240.2| Homo sapiens chromosome 5 clone RP11-103P4, complete sequence Length = 163673 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 gataactgaatcatcaggg 97 ||||||||||||||||||| Sbjct: 74480 gataactgaatcatcaggg 74498
>gb|AC160825.3| Xenopus tropicalis clone ISB1-168O21, complete sequence Length = 102150 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 acagaggcaggactgtcca 72 ||||||||||||||||||| Sbjct: 65568 acagaggcaggactgtcca 65550
>emb|CR388933.1| Gallus gallus finished cDNA, clone ChEST172a9 Length = 942 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 106 caataacaaattcaaaaat 124 ||||||||||||||||||| Sbjct: 323 caataacaaattcaaaaat 341
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 71 caaacaacgataactgaat 89 ||||||||||||||||||| Sbjct: 3268110 caaacaacgataactgaat 3268128
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 gggaggaacaataacaaat 116 ||||||||||||||||||| Sbjct: 465730 gggaggaacaataacaaat 465748
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 gggaggaacaataacaaat 116 ||||||||||||||||||| Sbjct: 14422165 gggaggaacaataacaaat 14422183
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 123 atggcgatggatgtgcaaa 141 ||||||||||||||||||| Sbjct: 5375556 atggcgatggatgtgcaaa 5375538
>gb|AC007836.5|AC007836 Drosophila melanogaster, chromosome 2R, region 50F-51C, BAC clone BACR06D02, complete sequence Length = 172791 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 atgcaaatttcgttcgatt 28 ||||||||||||||||||| Sbjct: 34532 atgcaaatttcgttcgatt 34550
>gb|AF288385.1|AF288385 Homo sapiens carbonic anhydrase-related protein X mRNA, complete cds Length = 2926 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 52 ttacagaggcaggactgtccaaacaac 78 |||||| || ||||||||||||||||| Sbjct: 1581 ttacaggggaaggactgtccaaacaac 1607
>gb|AC005883.14|AC005883 Homo sapiens chromosome 17, clone RP11-958E11, complete sequence Length = 146224 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 52 ttacagaggcaggactgtccaaacaac 78 |||||| || ||||||||||||||||| Sbjct: 3595 ttacaggggaaggactgtccaaacaac 3621
>gb|AC154482.2| Mus musculus BAC clone RP23-198P13 from chromosome 13, complete sequence Length = 214193 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 acagaggcaggactgtcca 72 ||||||||||||||||||| Sbjct: 17568 acagaggcaggactgtcca 17586
>dbj|AP003200.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1046G12 Length = 163533 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 123 atggcgatggatgtgcaaa 141 ||||||||||||||||||| Sbjct: 126900 atggcgatggatgtgcaaa 126882
>dbj|AB046046.1| Macaca fascicularis brain cDNA, clone:QccE-11301, similar to human carbonic anhydrase X (CA10), NM_020178.2 Length = 1972 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 52 ttacagaggcaggactgtccaaacaac 78 |||||| || ||||||||||||||||| Sbjct: 1310 ttacaggggaaggactgtccaaacaac 1336
>gb|AF208401.1|AF208401 Gallus gallus POP1D protein (POP1) mRNA, complete cds Length = 3950 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 106 caataacaaattcaaaaat 124 ||||||||||||||||||| Sbjct: 34 caataacaaattcaaaaat 52
>gb|AF204170.1|AF204170 Gallus gallus popeye protein 3 (Pop3) mRNA, complete cds Length = 1778 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 106 caataacaaattcaaaaat 124 ||||||||||||||||||| Sbjct: 3 caataacaaattcaaaaat 21
>gb|AC009480.4| Homo sapiens BAC clone RP11-295N18 from 2, complete sequence Length = 188353 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 25 gattcacacacatgttttggttt 47 |||||||||||||||||| |||| Sbjct: 76795 gattcacacacatgtttttgttt 76817
>dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0021M10 Length = 163416 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 gggaggaacaataacaaat 116 ||||||||||||||||||| Sbjct: 15339 gggaggaacaataacaaat 15357
>dbj|AP003574.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0526E12 Length = 150872 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 gggaggaacaataacaaat 116 ||||||||||||||||||| Sbjct: 150040 gggaggaacaataacaaat 150058
>dbj|AP005892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0011D16 Length = 177329 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 71 caaacaacgataactgaat 89 ||||||||||||||||||| Sbjct: 144423 caaacaacgataactgaat 144441
>gb|AC102224.21| Mus musculus chromosome 3, clone RP24-372D1, complete sequence Length = 196936 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Minus Query: 101 aggaacaataacaaattcaaaaatggc 127 ||||| ||||||||||||||| ||||| Sbjct: 154486 aggaagaataacaaattcaaatatggc 154460
>dbj|AB006701.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOP9 Length = 84194 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 catgttttggttttctgtt 53 ||||||||||||||||||| Sbjct: 30597 catgttttggttttctgtt 30579
>dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0007D08 Length = 183142 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 gggaggaacaataacaaat 116 ||||||||||||||||||| Sbjct: 55690 gggaggaacaataacaaat 55708
>ref|XM_319641.2| Anopheles gambiae str. PEST ENSANGP00000013934 (ENSANGG00000011445), mRNA Length = 856 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 gatgtgcaaaaaccagcag 150 ||||||||||||||||||| Sbjct: 298 gatgtgcaaaaaccagcag 316
>gb|AC154230.2| Mus musculus BAC clone RP24-156E24 from 16, complete sequence Length = 136341 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 104 aacaataacaaattcaaaa 122 ||||||||||||||||||| Sbjct: 51011 aacaataacaaattcaaaa 50993
>gb|AE003814.3| Drosophila melanogaster chromosome 2R, section 36 of 73 of the complete sequence Length = 254438 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 atgcaaatttcgttcgatt 28 ||||||||||||||||||| Sbjct: 70388 atgcaaatttcgttcgatt 70406
>gb|AE003546.4| Drosophila melanogaster chromosome 3L, section 39 of 83 of the complete sequence Length = 281589 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 aaaaggaatgcaaatttcg 21 ||||||||||||||||||| Sbjct: 73251 aaaaggaatgcaaatttcg 73269
>gb|AE003544.4| Drosophila melanogaster chromosome 3L, section 41 of 83 of the complete sequence Length = 280378 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 100 gaggaacaataacaaattcaaaa 122 |||||||||||||||| |||||| Sbjct: 182962 gaggaacaataacaaaatcaaaa 182984
>emb|AL021447.3|CEF19B2 Caenorhabditis elegans Cosmid F19B2, complete sequence Length = 38950 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 106 caataacaaattcaaaaat 124 ||||||||||||||||||| Sbjct: 23526 caataacaaattcaaaaat 23508
>emb|CT573501.1| Medicago truncatula chromosome 5 clone mth2-60o20, COMPLETE SEQUENCE Length = 114271 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 107 aataacaaattcaaaaatg 125 ||||||||||||||||||| Sbjct: 82147 aataacaaattcaaaaatg 82129
>gb|AC004349.1|AC004349 Drosophila melanogaster DNA sequence (P1 DS04327 (D251)), complete sequence Length = 81602 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 aaaggaatgcaaatttcgt 22 ||||||||||||||||||| Sbjct: 56287 aaaggaatgcaaatttcgt 56269
>gb|AC154248.2| Mus musculus BAC clone RP24-182I14 from chromosome 13, complete sequence Length = 188542 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 30 acacacatgttttggtttt 48 ||||||||||||||||||| Sbjct: 120890 acacacatgttttggtttt 120908
>gb|AC164977.2| Mus musculus BAC clone RP23-446B6 from chromosome 14, complete sequence Length = 179146 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 tttggttttctgttacaga 58 ||||||||||||||||||| Sbjct: 163462 tttggttttctgttacaga 163444
>dbj|AB001597.1| Homo sapiens hucep-15 mRNA for cerebral protein-15, complete cds Length = 987 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 52 ttacagaggcaggactgtccaaacaac 78 |||||| || ||||||||||||||||| Sbjct: 913 ttacaggggaaggactgtccaaacaac 939
>dbj|AB036836.1| Homo sapiens mRNA for Carbonic anhydrase-related protein 10, complete cds Length = 2720 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 52 ttacagaggcaggactgtccaaacaac 78 |||||| || ||||||||||||||||| Sbjct: 1815 ttacaggggaaggactgtccaaacaac 1841 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,167,306 Number of Sequences: 3902068 Number of extensions: 2167306 Number of successful extensions: 187632 Number of sequences better than 10.0: 99 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 187144 Number of HSP's gapped (non-prelim): 488 length of query: 153 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 132 effective length of database: 17,151,101,840 effective search space: 2263945442880 effective search space used: 2263945442880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
