ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbast52h12 |
|---|---|
| Clone Library Name | barley_pub |
>ASL1_ARATH (O80931) Protein ASYMMETRIC LEAVES1 (Myb-related protein 91)| (AtMYB91) (Protein PHANTASTICA) Length = 367 Score = 52.8 bits (125), Expect = 2e-07 Identities = 22/32 (68%), Positives = 28/32 (87%) Frame = -3 Query: 370 VAGLRRDAELKEQKMAEQWATKHARLTKFLEQ 275 + GLRRDAE K+QK+A+QW ++H RLTKFLEQ Sbjct: 327 LVGLRRDAEAKDQKLADQWTSRHIRLTKFLEQ 358
>INSM1_HUMAN (Q01101) Insulinoma-associated protein 1 (Zinc finger protein IA-1)| Length = 510 Score = 30.4 bits (67), Expect = 1.1 Identities = 26/78 (33%), Positives = 30/78 (38%), Gaps = 8/78 (10%) Frame = -2 Query: 362 TPA*CRAQGAEDGGAV--------GHQARPPHQVPRAGRLLVPPLATRRDERPLTARRFA 207 TP R +G EDG G +A PP P G L PP A ER A A Sbjct: 14 TPVSYRVRGGEDGDRALLLSPSCGGARAEPPAPSPVPGPLPPPPPA----ERAHAALAAA 69 Query: 206 FLHAQHPNQTPEKTMASH 153 A P P+ A+H Sbjct: 70 LACAPGPQPPPQGPRAAH 87
>FDHD_XANOR (Q5GZ27) Protein fdhD homolog| Length = 281 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +2 Query: 170 SLGFGLDAARARKQTGAPSAAVHLAGW 250 +L LDA AR+ A + AVH AGW Sbjct: 145 ALAHALDALHARQPIAAQTGAVHAAGW 171
>FDHD_XANAC (Q8PJP3) Protein fdhD homolog| Length = 281 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +2 Query: 170 SLGFGLDAARARKQTGAPSAAVHLAGW 250 +L LDA AR+ A + AVH AGW Sbjct: 145 ALAHALDALHARQPIAAQTGAVHAAGW 171
>ATRIP_HUMAN (Q8WXE1) ATR-interacting protein (ATM and Rad3-related-interacting| protein) Length = 791 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/59 (30%), Positives = 27/59 (45%) Frame = +3 Query: 192 LRVQESKPARRQRPFISPGGQRRHEEPTCSRNLVRRACLVAHCSAIFCSLSSASRRSPA 368 LR K Q+ F+ QR + + + NL+ + L+ S C L S+S SPA Sbjct: 283 LRGDSIKQEEAQKSFVDSWRQRSNTQGSILINLLLKQPLIPGSSLSLCHLLSSSSESPA 341
>CN145_HUMAN (Q6ZU80) Protein C14orf145| Length = 623 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -3 Query: 358 RRDAELKEQKMAEQWATKHARLTKFLEQ 275 R D +LK Q+ QW KH +L + LE+ Sbjct: 115 REDLKLKAQESIRQWKLKHKKLERALEK 142
>ATRIP_MACFA (Q9N077) ATR-interacting protein (ATM and Rad3-related-interacting| protein) (Fragment) Length = 655 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/59 (30%), Positives = 27/59 (45%) Frame = +3 Query: 192 LRVQESKPARRQRPFISPGGQRRHEEPTCSRNLVRRACLVAHCSAIFCSLSSASRRSPA 368 LR K Q+ F+ QR + + + NL+ + L+ S C L S+S SPA Sbjct: 148 LRGDSIKQEEAQKSFVDSWRQRSNTQGSILINLLLKQPLIPGSSLSLCHLLSSSSESPA 206
>FDHD_XANCP (Q8P888) Protein fdhD homolog| Length = 281 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +2 Query: 170 SLGFGLDAARARKQTGAPSAAVHLAGW 250 +L LDA AR+ A + AVH AGW Sbjct: 145 ALARALDALHARQPIAAQTGAVHAAGW 171
>MYST2_MOUSE (Q5SVQ0) Histone acetyltransferase MYST2 (EC 2.3.1.48) (MYST| protein 2) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein 2) (Histone acetyltransferase binding to ORC1) Length = 613 Score = 28.5 bits (62), Expect = 4.2 Identities = 10/33 (30%), Positives = 18/33 (54%) Frame = -3 Query: 343 LKEQKMAEQWATKHARLTKFLEQVGSSCRRWPP 245 LK Q + ++W K A+ + + + SC +W P Sbjct: 577 LKRQDLIDEWIAKEAKRSNSNKTMDPSCLKWTP 609
>BBS1_HUMAN (Q8NFJ9) Bardet-Biedl syndrome 1 protein (BBS2-like protein 2)| Length = 593 Score = 28.5 bits (62), Expect = 4.2 Identities = 18/53 (33%), Positives = 23/53 (43%) Frame = -2 Query: 299 PPHQVPRAGRLLVPPLATRRDERPLTARRFAFLHAQHPNQTPEKTMASHACLF 141 P Q PR L P + T L A FL QH +TP +AS C++ Sbjct: 61 PGGQQPRLKVLKGPLVMTESPLPALPAAAATFLMEQHEPRTPALALASGPCVY 113
>MYST2_RAT (Q810T5) Histone acetyltransferase MYST2 (EC 2.3.1.48) (MYST| protein 2) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein 2) (Histone acetyltransferase binding to ORC1) Length = 612 Score = 28.5 bits (62), Expect = 4.2 Identities = 10/33 (30%), Positives = 18/33 (54%) Frame = -3 Query: 343 LKEQKMAEQWATKHARLTKFLEQVGSSCRRWPP 245 LK Q + ++W K A+ + + + SC +W P Sbjct: 576 LKRQDLIDEWIAKEAKRSNSNKTMDPSCLKWTP 608
>MYST2_HUMAN (O95251) Histone acetyltransferase MYST2 (EC 2.3.1.48) (MYST| protein 2) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein 2) (Histone acetyltransferase binding to ORC1) Length = 611 Score = 28.5 bits (62), Expect = 4.2 Identities = 10/33 (30%), Positives = 18/33 (54%) Frame = -3 Query: 343 LKEQKMAEQWATKHARLTKFLEQVGSSCRRWPP 245 LK Q + ++W K A+ + + + SC +W P Sbjct: 575 LKRQDLIDEWIAKEAKRSNSNKTMDPSCLKWTP 607
>WHRN_MOUSE (Q80VW5) Whirlin| Length = 906 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/47 (25%), Positives = 19/47 (40%) Frame = -2 Query: 311 HQARPPHQVPRAGRLLVPPLATRRDERPLTARRFAFLHAQHPNQTPE 171 H PP + P AG L PP + + + F + P+ P+ Sbjct: 688 HLKSPPAETPGAGACLPPPSPSEHPDAVGANQHFVLVEVHRPDSEPD 734
>WHRN_RAT (Q810W9) Whirlin (CASK-interacting protein CIP98)| Length = 920 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/47 (25%), Positives = 19/47 (40%) Frame = -2 Query: 311 HQARPPHQVPRAGRLLVPPLATRRDERPLTARRFAFLHAQHPNQTPE 171 H PP + P AG L PP + + + F + P+ P+ Sbjct: 701 HLKSPPAEAPGAGACLPPPSPSEHADAMGANQHFVLVEVHRPDSEPD 747
>CT174_HUMAN (Q5JPB2) Protein C20orf174| Length = 1082 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%) Frame = +3 Query: 195 RVQESKPARRQRPFISPGGQRRHEE----PTCSRNLVR 296 R+ S+PA R+ P +PG R PTC +LV+ Sbjct: 434 RMATSRPAARELPISAPGAPREATSSPPTPTCEAHLVQ 471
>ANLN_XENLA (Q801E2) Actin-binding protein anillin| Length = 1116 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -3 Query: 295 LTKFLEQVGSSCRRWPPGEMNGR*RRAGLLSCTRSIQTK 179 + FLE+ G C+ P +N R A L T+SIQ + Sbjct: 369 IKSFLERFGEKCQEHSPAPLNQGHRTAVLTPNTKSIQER 407
>RDH1_HUMAN (Q92781) 11-cis retinol dehydrogenase (EC 1.1.1.105) (11-cis RDH)| Length = 318 Score = 27.7 bits (60), Expect = 7.1 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +3 Query: 168 LLWGLVWMLRVQESKPARRQRPFIS 242 LLW ++W+LR ++S PA FI+ Sbjct: 10 LLWAVLWLLRDRQSLPASNAFVFIT 34
>EGLN1_HUMAN (Q9GZT9) Egl nine homolog 1 (EC 1.14.11.-) (Hypoxia-inducible| factor prolyl hydroxylase 2) (HIF-prolyl hydroxylase 2) (HIF-PH2) (HPH-2) (Prolyl hydroxylase domain-containing protein 2) (PHD2) (SM-20) Length = 426 Score = 27.7 bits (60), Expect = 7.1 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Frame = -2 Query: 341 QGAEDGGAVGHQARP-PHQVPRAGRLLVPPLATRRDERPLTARR 213 QG+E GA+GH P H P + PP A R+ R ARR Sbjct: 59 QGSE--GALGHGVGPHQHSGPAPPAAVPPPRAGAREPRKAAARR 100
>NRDJ_BDEBA (Q6MNP6) Vitamin B12-dependent ribonucleotide reductase (EC| 1.17.4.1) (Ribonucleoside-diphosphate reductase nrdJ) Length = 764 Score = 27.3 bits (59), Expect = 9.3 Identities = 21/65 (32%), Positives = 26/65 (40%) Frame = -3 Query: 352 DAELKEQKMAEQWATKHARLTKFLEQVGSSCRRWPPGEMNGR*RRAGLLSCTRSIQTKPQ 173 DA +K + W K ARLT G R P GE+ R RA + IQ Sbjct: 307 DAFMKAVEQERPWKLK-ARLT------GKVLREIPAGEVWNRITRAAWMCADPGIQFHDT 359 Query: 172 RRRWH 158 +WH Sbjct: 360 INKWH 364
>PDE4C_HUMAN (Q08493) cAMP-specific 3',5'-cyclic phosphodiesterase 4C (EC| 3.1.4.17) (DPDE1) (PDE21) Length = 712 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = -2 Query: 350 CRAQGAEDGGAVGHQARPPHQVPRAGRLLVPPLATRRDERPLTARRFAFLH 198 CR E+G + G +A P P GR++ P+ P + RR +FL+ Sbjct: 79 CRRFDLENGLSCGRRALDPQSSPGLGRIMQAPV-------PHSQRRESFLY 122 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,953,335 Number of Sequences: 219361 Number of extensions: 720344 Number of successful extensions: 2094 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2041 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2094 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
