ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast52b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ADH2_CAEEL (O45687) Probable alcohol dehydrogenase K12G11.4 (EC ... 28 5.4
2YTNL_BACSU (O34980) Hypothetical protein ytnL 28 7.1
3CN132_HUMAN (Q9NPU4) Protein C14orf132 27 9.2

>ADH2_CAEEL (O45687) Probable alcohol dehydrogenase K12G11.4 (EC 1.1.1.1)|
          Length = 351

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +1

Query: 163 RKKGKLVFVWLPKFSTIYL--LSTICKTL 243
           RK+G +VFV LPK  TI L  LS IC  +
Sbjct: 263 RKRGTVVFVGLPKDGTIPLDTLSLICNEI 291



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>YTNL_BACSU (O34980) Hypothetical protein ytnL|
          Length = 416

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +1

Query: 112 NLPYIQNLKGTSPTKTERKKGKLVFVWLPKFSTIYLLSTICKTLGSCSLHVHHSPSMEKR 291
           +L Y +N++G+ P +T         + L + S    LST+ K L     H+H  P + K 
Sbjct: 2   SLDYWRNIEGSYPYQTTGND----ILTLKEESNPVNLSTLEKQLIGIRRHLHQYPELSKE 57

Query: 292 SYE 300
            +E
Sbjct: 58  EFE 60



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>CN132_HUMAN (Q9NPU4) Protein C14orf132|
          Length = 173

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = +1

Query: 190 WLPK-FSTIYLLSTI----CKTLGSCSLHVHHSPSM 282
           W PK  S + LLS +    CKT G+  L  HH PS+
Sbjct: 93  WRPKRLSGVCLLSALLPDPCKTNGTFLLQKHHLPSL 128


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,719,014
Number of Sequences: 219361
Number of extensions: 979315
Number of successful extensions: 2547
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2547
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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