ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast52b05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192784.1| Oryza sativa (japonica cultivar-group), predic... 218 1e-53
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 218 1e-53
3dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic D... 218 1e-53
4ref|NM_192785.1| Oryza sativa (japonica cultivar-group), predic... 60 6e-06
5dbj|AK069226.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 6e-06
6dbj|AK061211.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 6e-06
7gb|AY105809.1| Zea mays PCO090443 mRNA sequence 58 3e-05
8ref|NM_189610.2| Oryza sativa (japonica cultivar-group), mRNA 44 0.38
9dbj|AP002486.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.38
10dbj|AK110554.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.38
11dbj|AK104360.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.38
12dbj|AK098922.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.38
13dbj|AK065320.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.38
14dbj|AK065131.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.38
15dbj|AK061343.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.38
16dbj|AP001541.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 44 0.38
17dbj|AP001284.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 44 0.38
18gb|AY663412.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 1.5
19gb|AY663410.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 1.5
20gb|AY663408.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 1.5
21gb|AY663407.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 1.5
22gb|AY663405.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 1.5
23gb|AY663404.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 1.5
24gb|AY663402.1| Gorilla gorilla voucher Coriell Cell Repository D... 42 1.5
25gb|AY663399.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 1.5
26gb|AY663397.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 1.5
27gb|AY663396.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 1.5
28gb|AY663394.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 1.5
29emb|CR854861.1| Human DNA sequence from clone XX-BQB97F8_109B10_... 42 1.5
30emb|Z84489.1|HS93N13 Human DNA sequence from clone RP1-93N13 on ... 42 1.5
31emb|AL662842.3| Human DNA sequence from clone XXbac-181I15 on ch... 42 1.5
32emb|CR753901.9| Human DNA sequence from clone DADB-166N19 on chr... 42 1.5
33emb|CR753835.3| Human DNA sequence from clone DAMA-265D9 on chro... 42 1.5
34emb|CR753309.2| Human DNA sequence from clone DADB-102D14 on chr... 42 1.5
35gb|AC154217.2| Mus musculus BAC clone RP24-357L19 from chromosom... 42 1.5
36gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 1.5
37emb|AJ132431.1|GPU132431 Gibberella pulicaris acl1 gene, exons 1... 42 1.5
38ref|NM_189664.1| Oryza sativa (japonica cultivar-group), predic... 40 6.0
39gb|AC142119.2| Homo sapiens fosmid clone XXFOS-80464F2 from 2, c... 40 6.0
40emb|CR932703.1|CNS0KYEU Paramecium tetraurelia, Small GTPase rab... 40 6.0
41emb|CR812847.5| Zebrafish DNA sequence from clone DKEY-9I15 in l... 40 6.0
42gb|AC157319.2| Zea mays clone ZMMBBb-136E2, complete sequence 40 6.0
43emb|BX927151.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 6.0
44emb|BX890620.9| Zebrafish DNA sequence from clone DKEY-48C14 in ... 40 6.0
45emb|BX324223.23| Zebrafish DNA sequence from clone CH211-217F24 ... 40 6.0
46gb|AC125610.4| Homo sapiens 3 BAC RP11-189B7 (Roswell Park Cance... 40 6.0
47gb|AC106899.5| Homo sapiens BAC clone RP11-734N2 from 2, complet... 40 6.0
48gb|AC009505.3| Homo sapiens BAC clone RP11-526D2 from 2, complet... 40 6.0
49gb|AC156569.3| Mus musculus BAC clone RP23-315K10 from chromosom... 40 6.0
50dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 6.0
51dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
52emb|BX005228.7| Zebrafish DNA sequence from clone CH211-163M17 i... 40 6.0
53dbj|AK109404.2| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
54emb|Y00546.1|CGHOMTHR Corynebacterium glutamicum hom-thrB genes ... 40 6.0
55emb|Y00476.1|BLTHRA B. lactofermentum thr A gene 40 6.0
56dbj|AK104471.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
57dbj|AK104183.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
58dbj|AK100363.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
59dbj|AK061466.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
60dbj|AK060964.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
61gb|AY110165.1| Zea mays CL20454_1 mRNA sequence 40 6.0
62emb|CT030714.5| Mouse DNA sequence from clone RP23-223P19 on chr... 40 6.0
63emb|AL929503.4| Zebrafish DNA sequence from clone CH211-158I6, c... 40 6.0 
>ref|NM_192784.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1341

 Score =  218 bits (110), Expect = 1e-53
 Identities = 176/198 (88%)
 Strand = Plus / Minus

                                                                        
Query: 249  acttggcaagctcgtcggcgaacacagccgcgtgtggctcctccacgcaacggagcatca 308
            ||||||| ||||||||||||||  | || ||||| |||||||| ||||| |||||||| |
Sbjct: 1333 acttggcgagctcgtcggcgaaggcggcggcgtgcggctcctcgacgcagcggagcatga 1274

                                                                        
Query: 309  gtcggatcccacgcttgggtgccggtggcttgaggtagatcaccgacgcgacaatgttga 368
            | ||||| || |||||||| ||||| |||  ||||||||||||||||||||| |||||||
Sbjct: 1273 ggcggatgccgcgcttgggcgccggcggccggaggtagatcaccgacgcgacgatgttga 1214

                                                                        
Query: 369  catcgtcgttgagcgtgaacacgtatccgggctcgccgaagccgtagtccacctcgttga 428
            | ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 1213 cgtcgtcgttgagcgtgaacacgtacccgggctcgccgaacccgtagtccacctcgttga 1154

                              
Query: 429  agccgacgcggctccagt 446
            | || |||||||||||||
Sbjct: 1153 accccacgcggctccagt 1136
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  218 bits (110), Expect = 1e-53
 Identities = 176/198 (88%)
 Strand = Plus / Plus

                                                                            
Query: 249      acttggcaagctcgtcggcgaacacagccgcgtgtggctcctccacgcaacggagcatca 308
                ||||||| ||||||||||||||  | || ||||| |||||||| ||||| |||||||| |
Sbjct: 24391412 acttggcgagctcgtcggcgaaggcggcggcgtgcggctcctcgacgcagcggagcatga 24391471

                                                                            
Query: 309      gtcggatcccacgcttgggtgccggtggcttgaggtagatcaccgacgcgacaatgttga 368
                | ||||| || |||||||| ||||| |||  ||||||||||||||||||||| |||||||
Sbjct: 24391472 ggcggatgccgcgcttgggcgccggcggccggaggtagatcaccgacgcgacgatgttga 24391531

                                                                            
Query: 369      catcgtcgttgagcgtgaacacgtatccgggctcgccgaagccgtagtccacctcgttga 428
                | ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 24391532 cgtcgtcgttgagcgtgaacacgtacccgggctcgccgaacccgtagtccacctcgttga 24391591

                                  
Query: 429      agccgacgcggctccagt 446
                | || |||||||||||||
Sbjct: 24391592 accccacgcggctccagt 24391609



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 72/86 (83%)
 Strand = Plus / Plus

                                                                            
Query: 359      acaatgttgacatcgtcgttgagcgtgaacacgtatccgggctcgccgaagccgtagtcc 418
                |||||||| ||||| || || || |||||||| || |  |||||||| || |||||||||
Sbjct: 24394033 acaatgttcacatcatcattcagggtgaacacatagctcggctcgccaaacccgtagtcc 24394092

                                          
Query: 419      acctcgttgaagccgacgcggctcca 444
                ||||||||||| |||||  |||||||
Sbjct: 24394093 acctcgttgaacccgacatggctcca 24394118



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 403     gccgaagccgtagtccacctcg 424
               ||||||||||||||||||||||
Sbjct: 4531441 gccgaagccgtagtccacctcg 4531420



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 214     cggccacggccaagaagcag 233
               ||||||||||||||||||||
Sbjct: 4872532 cggccacggccaagaagcag 4872551
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>dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0410E01
          Length = 166753

 Score =  218 bits (110), Expect = 1e-53
 Identities = 176/198 (88%)
 Strand = Plus / Plus

                                                                          
Query: 249    acttggcaagctcgtcggcgaacacagccgcgtgtggctcctccacgcaacggagcatca 308
              ||||||| ||||||||||||||  | || ||||| |||||||| ||||| |||||||| |
Sbjct: 137316 acttggcgagctcgtcggcgaaggcggcggcgtgcggctcctcgacgcagcggagcatga 137375

                                                                          
Query: 309    gtcggatcccacgcttgggtgccggtggcttgaggtagatcaccgacgcgacaatgttga 368
              | ||||| || |||||||| ||||| |||  ||||||||||||||||||||| |||||||
Sbjct: 137376 ggcggatgccgcgcttgggcgccggcggccggaggtagatcaccgacgcgacgatgttga 137435

                                                                          
Query: 369    catcgtcgttgagcgtgaacacgtatccgggctcgccgaagccgtagtccacctcgttga 428
              | ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 137436 cgtcgtcgttgagcgtgaacacgtacccgggctcgccgaacccgtagtccacctcgttga 137495

                                
Query: 429    agccgacgcggctccagt 446
              | || |||||||||||||
Sbjct: 137496 accccacgcggctccagt 137513



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 72/86 (83%)
 Strand = Plus / Plus

                                                                          
Query: 359    acaatgttgacatcgtcgttgagcgtgaacacgtatccgggctcgccgaagccgtagtcc 418
              |||||||| ||||| || || || |||||||| || |  |||||||| || |||||||||
Sbjct: 139937 acaatgttcacatcatcattcagggtgaacacatagctcggctcgccaaacccgtagtcc 139996

                                        
Query: 419    acctcgttgaagccgacgcggctcca 444
              ||||||||||| |||||  |||||||
Sbjct: 139997 acctcgttgaacccgacatggctcca 140022
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>ref|NM_192785.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1275

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 72/86 (83%)
 Strand = Plus / Minus

                                                                        
Query: 359  acaatgttgacatcgtcgttgagcgtgaacacgtatccgggctcgccgaagccgtagtcc 418
            |||||||| ||||| || || || |||||||| || |  |||||||| || |||||||||
Sbjct: 1157 acaatgttcacatcatcattcagggtgaacacatagctcggctcgccaaacccgtagtcc 1098

                                      
Query: 419  acctcgttgaagccgacgcggctcca 444
            ||||||||||| |||||  |||||||
Sbjct: 1097 acctcgttgaacccgacatggctcca 1072
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>dbj|AK069226.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014K19, full
            insert sequence
          Length = 1562

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 72/86 (83%)
 Strand = Plus / Minus

                                                                        
Query: 359  acaatgttgacatcgtcgttgagcgtgaacacgtatccgggctcgccgaagccgtagtcc 418
            |||||||| ||||| || || || |||||||| || |  |||||||| || |||||||||
Sbjct: 1232 acaatgttcacatcatcattcagggtgaacacatagctcggctcgccaaacccgtagtcc 1173

                                      
Query: 419  acctcgttgaagccgacgcggctcca 444
            ||||||||||| |||||  |||||||
Sbjct: 1172 acctcgttgaacccgacatggctcca 1147
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>dbj|AK061211.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-D05, full
            insert sequence
          Length = 1556

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 72/86 (83%)
 Strand = Plus / Minus

                                                                        
Query: 359  acaatgttgacatcgtcgttgagcgtgaacacgtatccgggctcgccgaagccgtagtcc 418
            |||||||| ||||| || || || |||||||| || |  |||||||| || |||||||||
Sbjct: 1198 acaatgttcacatcatcattcagggtgaacacatagctcggctcgccaaacccgtagtcc 1139

                                      
Query: 419  acctcgttgaagccgacgcggctcca 444
            ||||||||||| |||||  |||||||
Sbjct: 1138 acctcgttgaacccgacatggctcca 1113
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>gb|AY105809.1| Zea mays PCO090443 mRNA sequence
          Length = 1086

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 71/85 (83%)
 Strand = Plus / Minus

                                                                       
Query: 362 atgttgacatcgtcgttgagcgtgaacacgtatccgggctcgccgaagccgtagtccacc 421
           ||||| || ||||||||||| ||||||||||| |  ||||| ||||| |||||||| || 
Sbjct: 783 atgttcacgtcgtcgttgagggtgaacacgtagcttggctcaccgaacccgtagtcaacg 724

                                    
Query: 422 tcgttgaagccgacgcggctccagt 446
           |||||||| || ||  |||||||||
Sbjct: 723 tcgttgaaacccacatggctccagt 699
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>ref|NM_189610.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1581

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 403  gccgaagccgtagtccacctcg 424
            ||||||||||||||||||||||
Sbjct: 1168 gccgaagccgtagtccacctcg 1147
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>dbj|AP002486.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0510F03
          Length = 149699

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 403   gccgaagccgtagtccacctcg 424
             ||||||||||||||||||||||
Sbjct: 66128 gccgaagccgtagtccacctcg 66107
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>dbj|AK110554.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-C05, full
           insert sequence
          Length = 1033

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 403 gccgaagccgtagtccacctcg 424
           ||||||||||||||||||||||
Sbjct: 214 gccgaagccgtagtccacctcg 235
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>dbj|AK104360.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C03, full
           insert sequence
          Length = 1097

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 403 gccgaagccgtagtccacctcg 424
           ||||||||||||||||||||||
Sbjct: 679 gccgaagccgtagtccacctcg 658
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>dbj|AK098922.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002O23, full
            insert sequence
          Length = 1581

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 403  gccgaagccgtagtccacctcg 424
            ||||||||||||||||||||||
Sbjct: 1168 gccgaagccgtagtccacctcg 1147
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>dbj|AK065320.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P13, full
            insert sequence
          Length = 2131

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 403  gccgaagccgtagtccacctcg 424
            ||||||||||||||||||||||
Sbjct: 1710 gccgaagccgtagtccacctcg 1689
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>dbj|AK065131.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P14, full
            insert sequence
          Length = 1593

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 403  gccgaagccgtagtccacctcg 424
            ||||||||||||||||||||||
Sbjct: 1172 gccgaagccgtagtccacctcg 1151
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>dbj|AK061343.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-E05, full
           insert sequence
          Length = 1097

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 403 gccgaagccgtagtccacctcg 424
           ||||||||||||||||||||||
Sbjct: 679 gccgaagccgtagtccacctcg 658
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>dbj|AP001541.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-683O4, complete
              sequence
          Length = 212884

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 69     gaaaagaaatcaacgcatggaagagatact 98
              |||||||||||||  |||||||||||||||
Sbjct: 197214 gaaaagaaatcaatacatggaagagatact 197243
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>dbj|AP001284.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-885L14, complete
             sequence
          Length = 153591

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 69    gaaaagaaatcaacgcatggaagagatact 98
             |||||||||||||  |||||||||||||||
Sbjct: 46625 gaaaagaaatcaatacatggaagagatact 46654
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>gb|AY663412.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA00576 MHC
             class II antigen (HLA-DQB1) gene, MHC class II antigen
             (HLA-DQA1) gene, HLA-DQA1-DQA1*0505 allele, and MHC class
             II antigen (HLA-DRB1) gene, HLA-DRB1-DRB1*110101 allele,
             complete cds
          Length = 108785

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 164   gtgaagaaaaagtacagtgag 184
             |||||||||||||||||||||
Sbjct: 49100 gtgaagaaaaagtacagtgag 49080
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>gb|AY663410.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA00576 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*030302
             allele and MHC class II antigen (HLA-DQA1) gene,
             HLA-DQA1-DQA1*0302 allele, complete cds; and MHC class II
             antigen (HLA-DRB1) gene, partial cds
          Length = 105171

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 164   gtgaagaaaaagtacagtgag 184
             |||||||||||||||||||||
Sbjct: 71811 gtgaagaaaaagtacagtgag 71791
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>gb|AY663408.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA04535 MHC
             class II antigen (HLA-DQB1) gene, MHC class II antigen
             (HLA-DQA1) gene, HLA-DQA1-DQA1*010401 allele, and MHC
             class II antigen (HLA-DRB1) gene, HLA-DRB1-DRB1*140501
             allele, complete cds
          Length = 100515

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 164   gtgaagaaaaagtacagtgag 184
             |||||||||||||||||||||
Sbjct: 53828 gtgaagaaaaagtacagtgag 53808
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>gb|AY663407.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA10923 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*020101
             allele, MHC class II antigen (HLA-DQA1) gene,
             HLA-DQA1-DQA1*050101 allele, and MHC class II antigen
             (HLA-DRB1) gene, HLA-DRB1-DRB1*030101 allele, complete cds
          Length = 106318

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 164   gtgaagaaaaagtacagtgag 184
             |||||||||||||||||||||
Sbjct: 60591 gtgaagaaaaagtacagtgag 60571
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>gb|AY663405.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA10540 MHC
             class II antigen (HLA-DQB1) gene, MHC class II antigen
             (HLA-DQA1) gene, HLA-DQA1-DQA1*010401 allele, and MHC
             class II antigen (HLA-DRB1) gene, complete cds
          Length = 116082

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 164   gtgaagaaaaagtacagtgag 184
             |||||||||||||||||||||
Sbjct: 56156 gtgaagaaaaagtacagtgag 56136
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>gb|AY663404.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA10540 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*030302
             allele and MHC class II antigen (HLA-DQA1) gene,
             HLA-DQA1-DQA1*0302 allele, complete cds; and MHC class II
             antigen (HLA-DRB1) gene, partial cds
          Length = 109441

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 164   gtgaagaaaaagtacagtgag 184
             |||||||||||||||||||||
Sbjct: 77105 gtgaagaaaaagtacagtgag 77085
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>gb|AY663402.1| Gorilla gorilla voucher Coriell Cell Repository DNA sample NG05251 MHC
             class II antigen (HLA-DRB1) gene, complete cds
          Length = 54488

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 164   gtgaagaaaaagtacagtgag 184
             |||||||||||||||||||||
Sbjct: 15227 gtgaagaaaaagtacagtgag 15207
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>gb|AY663399.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA01018 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*020101
             allele, MHC class II antigen (HLA-DQA1) gene,
             HLA-DQA1-DQA1*050101 allele, and MHC class II antigen
             (HLA-DRB1) gene, HLA-DRB1-DRB1*030101 allele, complete cds
          Length = 105464

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 164   gtgaagaaaaagtacagtgag 184
             |||||||||||||||||||||
Sbjct: 53906 gtgaagaaaaagtacagtgag 53886
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>gb|AY663397.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA01960 MHC
             class II antigen (HLA-DQB1), MHC class II antigen
             (HLA-DQA1), and MHC class II antigen (HLA-DRB1) genes,
             complete cds
          Length = 94591

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 164   gtgaagaaaaagtacagtgag 184
             |||||||||||||||||||||
Sbjct: 49295 gtgaagaaaaagtacagtgag 49275
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>gb|AY663396.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA14660 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*050101
             allele and MHC class II antigen (HLA-DQA1) gene, complete
             cds; and MHC class II antigen (HLA-DRB1) gene, partial cds
          Length = 100091

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 164   gtgaagaaaaagtacagtgag 184
             |||||||||||||||||||||
Sbjct: 65800 gtgaagaaaaagtacagtgag 65780
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>gb|AY663394.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA14661 MHC
             class II antigen (HLA-DQB1) gene, MHC class II antigen
             (HLA-DQA1) gene, HLA-DQA1-DQA1*0505 allele, and MHC class
             II antigen (HLA-DRB1) gene, HLA-DRB1-DRB1*110401 allele,
             complete cds
          Length = 127159

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 164   gtgaagaaaaagtacagtgag 184
             |||||||||||||||||||||
Sbjct: 68567 gtgaagaaaaagtacagtgag 68547
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>emb|CR854861.1| Human DNA sequence from clone XX-BQB97F8_109B10_3 on chromosome 6,
            complete sequence
          Length = 8396

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 164  gtgaagaaaaagtacagtgag 184
            |||||||||||||||||||||
Sbjct: 2597 gtgaagaaaaagtacagtgag 2617
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>emb|Z84489.1|HS93N13 Human DNA sequence from clone RP1-93N13 on chromosome 6p21 Contains the
             HLA-DRB1*03011 and HLA-DQA1*05011 genes for major
             histocompatibility complex class II DR beta 1 and DQ alpha
             1, a CpG island, ESTs, STSs and GSSs, complete sequence
          Length = 86896

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 164   gtgaagaaaaagtacagtgag 184
             |||||||||||||||||||||
Sbjct: 40388 gtgaagaaaaagtacagtgag 40368
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>emb|AL662842.3| Human DNA sequence from clone XXbac-181I15 on chromosome 6 contains the
              HLA-DRB3 gene for major histocompatibility complex, class
              II, DR beta 3, a major histocompatibility complex, class
              II, DR beta pseudogene, the HLA-DRB1 gene for major
              histocompatibility complex, class II, DR beta 1 and one CpG
              island, complete sequence
          Length = 130819

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 164    gtgaagaaaaagtacagtgag 184
              |||||||||||||||||||||
Sbjct: 110645 gtgaagaaaaagtacagtgag 110665
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>emb|CR753901.9| Human DNA sequence from clone DADB-166N19 on chromosome 6, complete
            sequence
          Length = 110625

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 164  gtgaagaaaaagtacagtgag 184
            |||||||||||||||||||||
Sbjct: 2495 gtgaagaaaaagtacagtgag 2515
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>emb|CR753835.3| Human DNA sequence from clone DAMA-265D9 on chromosome 6, complete
             sequence
          Length = 101064

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 164   gtgaagaaaaagtacagtgag 184
             |||||||||||||||||||||
Sbjct: 70801 gtgaagaaaaagtacagtgag 70821
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>emb|CR753309.2| Human DNA sequence from clone DADB-102D14 on chromosome 6, complete
             sequence
          Length = 107898

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 164   gtgaagaaaaagtacagtgag 184
             |||||||||||||||||||||
Sbjct: 79720 gtgaagaaaaagtacagtgag 79740
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>gb|AC154217.2| Mus musculus BAC clone RP24-357L19 from chromosome 17, complete sequence
          Length = 183535

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 177    acagtgagaaggtgttacaggcatgagaa 205
              |||| ||||||||| ||||||||||||||
Sbjct: 115536 acagagagaaggtggtacaggcatgagaa 115508
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 395     ccgggctcgccgaagccgtag 415
               |||||||||||||||||||||
Sbjct: 3564488 ccgggctcgccgaagccgtag 3564508
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>emb|AJ132431.1|GPU132431 Gibberella pulicaris acl1 gene, exons 1-2, isolate R-6380
          Length = 2819

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 246  cgtacttggcaagctcgtcggcgaa 270
            |||| ||||||||||||||||||||
Sbjct: 2118 cgtagttggcaagctcgtcggcgaa 2094
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>ref|NM_189664.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 912

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 214 cggccacggccaagaagcag 233
           ||||||||||||||||||||
Sbjct: 40  cggccacggccaagaagcag 21
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>gb|AC142119.2| Homo sapiens fosmid clone XXFOS-80464F2 from 2, complete sequence
          Length = 10256

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 99   agtgtggtttatacctgcac 118
            ||||||||||||||||||||
Sbjct: 5332 agtgtggtttatacctgcac 5313
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>emb|CR932703.1|CNS0KYEU Paramecium tetraurelia, Small GTPase rab, putative, complete gene
          Length = 3001

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 54  ctatttttgcacattgaaaa 73
           ||||||||||||||||||||
Sbjct: 495 ctatttttgcacattgaaaa 514
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>emb|CR812847.5| Zebrafish DNA sequence from clone DKEY-9I15 in linkage group 14,
             complete sequence
          Length = 230522

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    agatactagtgtggtttata 111
             ||||||||||||||||||||
Sbjct: 97669 agatactagtgtggtttata 97650
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>gb|AC157319.2| Zea mays clone ZMMBBb-136E2, complete sequence
          Length = 138186

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 403    gccgaagccgtagtccacctcgttgaagccga 434
              ||||||||||||||| ||||||  ||||||||
Sbjct: 109700 gccgaagccgtagtcgacctcggagaagccga 109731
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>emb|BX927151.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 4/10
          Length = 349459

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 362    atgttgacatcgtcgttgag 381
              ||||||||||||||||||||
Sbjct: 197948 atgttgacatcgtcgttgag 197967
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>emb|BX890620.9| Zebrafish DNA sequence from clone DKEY-48C14 in linkage group 14,
              complete sequence
          Length = 214857

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 153    tgcacaccaatgtgaagaaaaagt 176
              ||||||||| ||||||||||||||
Sbjct: 193251 tgcacaccattgtgaagaaaaagt 193228
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>emb|BX324223.23| Zebrafish DNA sequence from clone CH211-217F24 in linkage group 21,
              complete sequence
          Length = 223297

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 57     tttttgcacattgaaaagaaatca 80
              ||||||||||||||||| ||||||
Sbjct: 115077 tttttgcacattgaaaataaatca 115100
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>gb|AC125610.4| Homo sapiens 3 BAC RP11-189B7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 159706

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 55    tatttttgcacattgaaaagaaat 78
             ||||||||||||||||||| ||||
Sbjct: 87054 tatttttgcacattgaaaataaat 87077
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>gb|AC106899.5| Homo sapiens BAC clone RP11-734N2 from 2, complete sequence
          Length = 132562

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    caccataaactgaattttat 30
             ||||||||||||||||||||
Sbjct: 84470 caccataaactgaattttat 84489
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>gb|AC009505.3| Homo sapiens BAC clone RP11-526D2 from 2, complete sequence
          Length = 163880

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    aaaagaaatcaacgcatgga 89
             ||||||||||||||||||||
Sbjct: 97155 aaaagaaatcaacgcatgga 97136
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>gb|AC156569.3| Mus musculus BAC clone RP23-315K10 from chromosome 13, complete
             sequence
          Length = 165570

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   ccacggccaagaagcagtat 236
             ||||||||||||||||||||
Sbjct: 51899 ccacggccaagaagcagtat 51880
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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 362     atgttgacatcgtcgttgag 381
               ||||||||||||||||||||
Sbjct: 1242763 atgttgacatcgtcgttgag 1242782
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>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0710E05
          Length = 179714

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 214    cggccacggccaagaagcag 233
              ||||||||||||||||||||
Sbjct: 117181 cggccacggccaagaagcag 117200
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>emb|BX005228.7| Zebrafish DNA sequence from clone CH211-163M17 in linkage group 14,
              complete sequence
          Length = 171037

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     agatactagtgtggtttata 111
              ||||||||||||||||||||
Sbjct: 133548 agatactagtgtggtttata 133567
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>dbj|AK109404.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-E06, full
           insert sequence
          Length = 1095

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 214 cggccacggccaagaagcag 233
           ||||||||||||||||||||
Sbjct: 63  cggccacggccaagaagcag 44
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>emb|Y00546.1|CGHOMTHR Corynebacterium glutamicum hom-thrB genes for homoserine
            dehydrogenase and homoserine kinase
          Length = 3685

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 362  atgttgacatcgtcgttgag 381
            ||||||||||||||||||||
Sbjct: 1250 atgttgacatcgtcgttgag 1269
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>emb|Y00476.1|BLTHRA B. lactofermentum thr A gene
          Length = 1483

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 362 atgttgacatcgtcgttgag 381
           ||||||||||||||||||||
Sbjct: 345 atgttgacatcgtcgttgag 364
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>dbj|AK104471.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D10, full
           insert sequence
          Length = 1094

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 214 cggccacggccaagaagcag 233
           ||||||||||||||||||||
Sbjct: 62  cggccacggccaagaagcag 43
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>dbj|AK104183.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C11, full
           insert sequence
          Length = 1095

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 214 cggccacggccaagaagcag 233
           ||||||||||||||||||||
Sbjct: 63  cggccacggccaagaagcag 44
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>dbj|AK100363.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083N07, full
           insert sequence
          Length = 1308

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 214 cggccacggccaagaagcag 233
           ||||||||||||||||||||
Sbjct: 276 cggccacggccaagaagcag 257
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>dbj|AK061466.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-C05, full
           insert sequence
          Length = 1095

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 214 cggccacggccaagaagcag 233
           ||||||||||||||||||||
Sbjct: 63  cggccacggccaagaagcag 44
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>dbj|AK060964.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B05, full
           insert sequence
          Length = 1114

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 214 cggccacggccaagaagcag 233
           ||||||||||||||||||||
Sbjct: 63  cggccacggccaagaagcag 44
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>gb|AY110165.1| Zea mays CL20454_1 mRNA sequence
          Length = 1000

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 403 gccgaagccgtagtccacctcgttgaagccga 434
           ||||||||||||||| ||||||  ||||||||
Sbjct: 577 gccgaagccgtagtcgacctcggagaagccga 546
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>emb|CT030714.5| Mouse DNA sequence from clone RP23-223P19 on chromosome 13, complete
              sequence
          Length = 176581

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    ccacggccaagaagcagtat 236
              ||||||||||||||||||||
Sbjct: 165197 ccacggccaagaagcagtat 165178
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>emb|AL929503.4| Zebrafish DNA sequence from clone CH211-158I6, complete sequence
          Length = 174012

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 153   tgcacaccaatgtgaagaaaaagt 176
             ||||||||| ||||||||||||||
Sbjct: 17299 tgcacaccattgtgaagaaaaagt 17322


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,471,217
Number of Sequences: 3902068
Number of extensions: 4471217
Number of successful extensions: 104157
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103936
Number of HSP's gapped (non-prelim): 221
length of query: 446
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 424
effective length of database: 17,147,199,772
effective search space: 7270412703328
effective search space used: 7270412703328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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