ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast52a12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL929088.23| Mouse DNA sequence from clone RP23-360J2 on chr... 52 0.001
2emb|BX936415.10| Zebrafish DNA sequence from clone CH211-242N18 ... 50 0.005
3gb|AC161480.9| Mus musculus chromosome 15, clone RP23-404I10, co... 44 0.29
4gb|AC129775.4| Mus musculus BAC clone RP23-174N20 from chromosom... 44 0.29
5gb|AC124678.7| Mus musculus chromosome 15, clone RP24-107K17, co... 44 0.29
6gb|AC113470.14| Mus musculus chromosome 9, clone RP23-262N17, co... 44 0.29
7emb|AL713956.13| Mouse DNA sequence from clone RP23-412C18 on ch... 44 0.29
8emb|AL606508.12| Mouse DNA sequence from clone RP23-180B9 on chr... 44 0.29
9gb|AC154876.7| Mus musculus chromosome 3, clone RP23-190D19, com... 44 0.29
10emb|BX005154.6| Zebrafish DNA sequence from clone CH211-288G17 i... 44 0.29
11gb|AC117729.9| Mus musculus chromosome 8, clone RP24-126M11, com... 44 0.29
12gb|AC119900.7| Mus musculus chromosome 8, clone RP24-235K6, comp... 44 0.29
13emb|CT030184.14| Mouse DNA sequence from clone RP23-9C19 on chro... 44 0.29
14gb|AC132318.4| Mus musculus BAC clone RP24-249F24 from 3, comple... 44 0.29
15emb|AL929033.7| Mouse DNA sequence from clone RP23-427N17 on chr... 44 0.29
16gb|AC135084.4| Mus musculus BAC clone RP24-249E6 from 17, comple... 44 0.29
17gb|AC113507.12| Mus musculus chromosome 3, clone RP23-376O10, co... 44 0.29
18gb|AC167659.7| Mus musculus chromosome 7, clone RP23-165I8, comp... 44 0.29
19gb|AC134922.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
20gb|AC135079.9| Mus musculus chromosome 15, clone RP24-439P7, com... 42 1.1
21gb|AC183608.3| Pan troglodytes BAC clone CH251-271E16 from chrom... 42 1.1
22gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
23emb|AL590378.5| Human DNA sequence from clone RP11-49L2 on chrom... 42 1.1
24gb|AC152419.2| Pan troglodytes BAC clone RP43-4P10 from chromoso... 42 1.1
25gb|AC104580.5| Homo sapiens chromosome 8, clone RP11-1084G15, co... 42 1.1
26gb|AC079240.6| Homo sapiens BAC clone RP11-808H17 from 4, comple... 42 1.1
27gb|AC069411.21| Homo sapiens 3 BAC RP11-609K13 (Roswell Park Can... 42 1.1
28dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
29gb|AC019208.8| Homo sapiens BAC clone RP11-439J5 from 2, complet... 42 1.1
30gb|AC108678.3| Homo sapiens 3 BAC RP11-357G12 (Roswell Park Canc... 42 1.1
31gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 42 1.1
32dbj|BS000144.1| Pan troglodytes chromosome 22 clone:PTF22-001G11... 42 1.1
33emb|AL954305.14| Zebrafish DNA sequence from clone BUSM1-189A20 ... 42 1.1
34emb|AL954744.8| Zebrafish DNA sequence from clone DKEY-119M7 in ... 42 1.1
35gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
36emb|AL806527.7| Mouse DNA sequence from clone RP23-44D10 on chro... 42 1.1
37emb|AL589870.30| Mouse DNA sequence from clone RP23-118A2 on chr... 42 1.1
38ref|XM_868250.1| PREDICTED: Bos taurus similar to Rhabdoid tumor... 40 4.5
39gb|AC079277.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 4.5
40gb|AC145952.3| Pan troglodytes BAC clone RP43-18D16 from 7, comp... 40 4.5
41gb|AC139571.2| Mus musculus BAC clone RP24-73K9 from chromosome ... 40 4.5
42gb|AC092508.3| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 4.5
43emb|BX677675.9| Zebrafish DNA sequence from clone DKEYP-90G12 in... 40 4.5
44gb|AC126246.3| Mus musculus BAC clone RP24-354D18 from chromosom... 40 4.5
45gb|BC114013.1| Bos taurus similar to Rhabdoid tumor deletion reg... 40 4.5
46emb|AL161798.23| Human DNA sequence from clone RP11-108M11 on ch... 40 4.5
47emb|AL035416.7|HS782L23 Human DNA sequence from clone RP4-782L23... 40 4.5
48emb|AL590380.9| Mouse DNA sequence from clone RP23-146D23 on chr... 40 4.5
49emb|BX465851.5| Zebrafish DNA sequence from clone CH211-215H21 i... 40 4.5
50emb|BX530062.10| Zebrafish DNA sequence from clone DKEY-13M1 in ... 40 4.5
51gb|AC104864.6| Homo sapiens chromosome 8, clone RP11-324E17, com... 40 4.5
52gb|AC107464.5| Homo sapiens BAC clone RP11-1191J2 from 4, comple... 40 4.5
53emb|BX323017.6| Zebrafish DNA sequence from clone DKEYP-41F9, co... 40 4.5
54gb|AC099034.1| Drosophila melanogaster, chromosome 2R, region 58... 40 4.5
55gb|DP000048.1| Cercopithecus aethiops target 106 genomic scaffold 40 4.5
56gb|AC040161.5| Homo sapiens chromosome 16 clone CTC-420A11, comp... 40 4.5
57gb|AC159713.6| Mus musculus 6 BAC RP24-317F6 (Roswell Park Cance... 40 4.5
58gb|AC103586.3| Homo sapiens chromosome 3 clone RP11-79P21, compl... 40 4.5
59gb|AC064870.5| Homo sapiens BAC clone RP11-575E20 from 2, comple... 40 4.5
60gb|AC104938.7| Homo sapiens chromosome 15, clone CTD-2524L6, com... 40 4.5
61gb|AC069298.8|AC069298 Homo sapiens chromosome 3 clone RP11-56K2... 40 4.5
62emb|BX537355.13| Zebrafish DNA sequence from clone DKEY-18H6 in ... 40 4.5
63emb|X69763.1|STRBCS3 S.tuberosum rbcS3 gene for ribulose-(1,5)-b... 40 4.5
64emb|CR926459.7| Zebrafish DNA sequence from clone CH211-260O22 i... 40 4.5
65emb|BX470164.10| Zebrafish DNA sequence from clone DKEY-24L11 in... 40 4.5
66emb|CR555304.11| Zebrafish DNA sequence from clone DKEY-18C20 in... 40 4.5
67gb|AE003456.3| Drosophila melanogaster chromosome 2R, section 64... 40 4.5
68emb|X62695.1|HSCGMP4 H.sapiens DNA for cGMP phosphodiesterase (e... 40 4.5
69gb|AF070718.1|AF070718 Homo sapiens BAC clone 529F11 from 8q21, ... 40 4.5
70gb|AC153418.1| Mus musculus BAC clone RP23-437E18 from 17, compl... 40 4.5
71gb|AC167706.2| Reniera sp. JGI-2005 clone JGIBAYC-9H10, complete... 40 4.5
72gb|AC145978.3| Gallus gallus BAC clone CH261-10K7 from chromosom... 40 4.5
73gb|AC145947.3| Gallus gallus BAC clone CH261-24O5 from chromosom... 40 4.5
74gb|AC002446.1|AC002446 Drosophila melanogaster (P1 DS06754 (D83)... 40 4.5
75emb|CR385047.19| Zebrafish DNA sequence from clone DKEY-221N16 i... 40 4.5
76dbj|AP005638.2| Homo sapiens genomic DNA, chromosome 11 clone:CM... 40 4.5
77emb|Z79381.1|HSPA6C10 H.sapiens flow-sorted chromosome 6 TaqI fr... 40 4.5
78emb|AL358332.3|CNS05TE3 Human chromosome 14 DNA sequence BAC R-2... 40 4.5
79dbj|AP000347.1| Homo sapiens genomic DNA, chromosome 22q11.2, cl... 40 4.5
80dbj|AP000346.1| Homo sapiens genomic DNA, chromosome 22q11.2, cl... 40 4.5
81emb|AL606984.20| Mouse DNA sequence from clone RP23-81D5 on chro... 40 4.5
82dbj|AP004606.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 4.5 
>emb|AL929088.23| Mouse DNA sequence from clone RP23-360J2 on chromosome 2, complete
             sequence
          Length = 77156

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 258   gttccagtgttctgagcactctctgc 283
             ||||||||||||||||||||||||||
Sbjct: 64348 gttccagtgttctgagcactctctgc 64373
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>emb|BX936415.10| Zebrafish DNA sequence from clone CH211-242N18 in linkage group 6,
              complete sequence
          Length = 176089

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 4      gtacattacatgcatacatttatttattt 32
              ||||| |||||||||||||||||||||||
Sbjct: 144230 gtacagtacatgcatacatttatttattt 144258
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>gb|AC161480.9| Mus musculus chromosome 15, clone RP23-404I10, complete sequence
          Length = 187202

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 258   gttccagtgttctgagcactctctgc 283
             |||||||||||| |||||||||||||
Sbjct: 12947 gttccagtgttcagagcactctctgc 12922
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>gb|AC129775.4| Mus musculus BAC clone RP23-174N20 from chromosome 3, complete sequence
          Length = 225505

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 258    gttccagtgttctgagcactctctgc 283
              |||||||||||| |||||||||||||
Sbjct: 224630 gttccagtgttcagagcactctctgc 224655
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>gb|AC124678.7| Mus musculus chromosome 15, clone RP24-107K17, complete sequence
          Length = 137248

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 258   gttccagtgttctgagcactctctgc 283
             |||||||||||| |||||||||||||
Sbjct: 49185 gttccagtgttcagagcactctctgc 49160
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>gb|AC113470.14| Mus musculus chromosome 9, clone RP23-262N17, complete sequence
          Length = 202838

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 262    cagtgttctgagcactctctgc 283
              ||||||||||||||||||||||
Sbjct: 156128 cagtgttctgagcactctctgc 156149
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>emb|AL713956.13| Mouse DNA sequence from clone RP23-412C18 on chromosome 11 Contains
             part of the Odz2 gene for odd Oz/ten-m homolog 2
             (Drosophila), complete sequence
          Length = 138860

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 13    atgcatacatttatttattttc 34
             ||||||||||||||||||||||
Sbjct: 99860 atgcatacatttatttattttc 99881
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>emb|AL606508.12| Mouse DNA sequence from clone RP23-180B9 on chromosome 11 Contains the
             3' end of a novel gene and a CpG island, complete sequence
          Length = 189315

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 262   cagtgttctgagcactctctgc 283
             ||||||||||||||||||||||
Sbjct: 12105 cagtgttctgagcactctctgc 12084
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>gb|AC154876.7| Mus musculus chromosome 3, clone RP23-190D19, complete sequence
          Length = 196840

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 262   cagtgttctgagcactctctgc 283
             ||||||||||||||||||||||
Sbjct: 33185 cagtgttctgagcactctctgc 33164
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>emb|BX005154.6| Zebrafish DNA sequence from clone CH211-288G17 in linkage group 19,
              complete sequence
          Length = 164384

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 12     catgcatacatttatttatttt 33
              ||||||||||||||||||||||
Sbjct: 103390 catgcatacatttatttatttt 103369
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>gb|AC117729.9| Mus musculus chromosome 8, clone RP24-126M11, complete sequence
          Length = 193119

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 258   gttccagtgttctgagcactctctgc 283
             ||||||||| ||||||||||||||||
Sbjct: 34255 gttccagtggtctgagcactctctgc 34230
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>gb|AC119900.7| Mus musculus chromosome 8, clone RP24-235K6, complete sequence
          Length = 174540

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 258    gttccagtgttctgagcactctctgc 283
              ||||||||| ||||||||||||||||
Sbjct: 166697 gttccagtggtctgagcactctctgc 166672
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>emb|CT030184.14| Mouse DNA sequence from clone RP23-9C19 on chromosome 13, complete
             sequence
          Length = 201341

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 258   gttccagtgttctgagcactctctgc 283
             |||||||||||| |||||||||||||
Sbjct: 51546 gttccagtgttcagagcactctctgc 51571
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>gb|AC132318.4| Mus musculus BAC clone RP24-249F24 from 3, complete sequence
          Length = 167159

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 258   gttccagtgttctgagcactctctgc 283
             |||||||||||| |||||||||||||
Sbjct: 26890 gttccagtgttcagagcactctctgc 26915
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>emb|AL929033.7| Mouse DNA sequence from clone RP23-427N17 on chromosome 2, complete
             sequence
          Length = 164571

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 258   gttccagtgttctgagcactctctgc 283
             |||||||||||| |||||||||||||
Sbjct: 87209 gttccagtgttcagagcactctctgc 87184
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>gb|AC135084.4| Mus musculus BAC clone RP24-249E6 from 17, complete sequence
          Length = 188990

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 262   cagtgttctgagcactctctgc 283
             ||||||||||||||||||||||
Sbjct: 61501 cagtgttctgagcactctctgc 61480
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>gb|AC113507.12| Mus musculus chromosome 3, clone RP23-376O10, complete sequence
          Length = 210262

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 262   cagtgttctgagcactctctgc 283
             ||||||||||||||||||||||
Sbjct: 12913 cagtgttctgagcactctctgc 12934
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>gb|AC167659.7| Mus musculus chromosome 7, clone RP23-165I8, complete sequence
          Length = 248723

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 262    cagtgttctgagcactctctgc 283
              ||||||||||||||||||||||
Sbjct: 184156 cagtgttctgagcactctctgc 184135
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>gb|AC134922.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0004D06, complete sequence
          Length = 157547

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 13    atgcatacatttatttatttt 33
             |||||||||||||||||||||
Sbjct: 22416 atgcatacatttatttatttt 22396
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>gb|AC135079.9| Mus musculus chromosome 15, clone RP24-439P7, complete sequence
          Length = 155778

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 13    atgcatacatttatttatttt 33
             |||||||||||||||||||||
Sbjct: 83340 atgcatacatttatttatttt 83320
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>gb|AC183608.3| Pan troglodytes BAC clone CH251-271E16 from chromosome 7, complete
              sequence
          Length = 138895

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 13     atgcatacatttatttatttt 33
              |||||||||||||||||||||
Sbjct: 134629 atgcatacatttatttatttt 134649
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>gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBb0076M06, complete sequence
          Length = 133581

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 13     atgcatacatttatttatttt 33
              |||||||||||||||||||||
Sbjct: 122233 atgcatacatttatttatttt 122213
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>emb|AL590378.5| Human DNA sequence from clone RP11-49L2 on chromosome 10 Contains a
             novel gene and a novel MAM domain containing protein,
             complete sequence
          Length = 150889

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 13    atgcatacatttatttatttt 33
             |||||||||||||||||||||
Sbjct: 85760 atgcatacatttatttatttt 85740
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>gb|AC152419.2| Pan troglodytes BAC clone RP43-4P10 from chromosome 7, complete
             sequence
          Length = 154622

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 13    atgcatacatttatttatttt 33
             |||||||||||||||||||||
Sbjct: 95642 atgcatacatttatttatttt 95662
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>gb|AC104580.5| Homo sapiens chromosome 8, clone RP11-1084G15, complete sequence
          Length = 179270

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 228    cttcacatgcctgcatttatc 248
              |||||||||||||||||||||
Sbjct: 103010 cttcacatgcctgcatttatc 103030
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>gb|AC079240.6| Homo sapiens BAC clone RP11-808H17 from 4, complete sequence
          Length = 202847

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    tacatttatttattttctgct 38
             |||||||||||||||||||||
Sbjct: 28696 tacatttatttattttctgct 28676
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>gb|AC069411.21| Homo sapiens 3 BAC RP11-609K13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 156733

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 7     cattacatgcatacatttatt 27
             |||||||||||||||||||||
Sbjct: 11397 cattacatgcatacatttatt 11417
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 13       atgcatacatttatttatttt 33
                |||||||||||||||||||||
Sbjct: 26320584 atgcatacatttatttatttt 26320564
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>gb|AC019208.8| Homo sapiens BAC clone RP11-439J5 from 2, complete sequence
          Length = 188164

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 20    catttatttattttctgctga 40
             |||||||||||||||||||||
Sbjct: 98184 catttatttattttctgctga 98204
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>gb|AC108678.3| Homo sapiens 3 BAC RP11-357G12 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 56921

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 7     cattacatgcatacatttatt 27
             |||||||||||||||||||||
Sbjct: 10643 cattacatgcatacatttatt 10663
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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 292     cagtatgaaaaactgaagcag 312
               |||||||||||||||||||||
Sbjct: 1781270 cagtatgaaaaactgaagcag 1781290
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>dbj|BS000144.1| Pan troglodytes chromosome 22 clone:PTF22-001G11, map 22, complete
             sequences
          Length = 38010

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 13    atgcatacatttatttatttt 33
             |||||||||||||||||||||
Sbjct: 24518 atgcatacatttatttatttt 24498
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>emb|AL954305.14| Zebrafish DNA sequence from clone BUSM1-189A20 in linkage group 20,
             complete sequence
          Length = 110369

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 13    atgcatacatttatttatttt 33
             |||||||||||||||||||||
Sbjct: 87078 atgcatacatttatttatttt 87058
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>emb|AL954744.8| Zebrafish DNA sequence from clone DKEY-119M7 in linkage group 20,
             complete sequence
          Length = 166911

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 13    atgcatacatttatttatttt 33
             |||||||||||||||||||||
Sbjct: 52100 atgcatacatttatttatttt 52080
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 13       atgcatacatttatttatttt 33
                |||||||||||||||||||||
Sbjct: 26634842 atgcatacatttatttatttt 26634822
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>emb|AL806527.7| Mouse DNA sequence from clone RP23-44D10 on chromosome 4, complete
              sequence
          Length = 176816

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 17     atacatttatttattttctgc 37
              |||||||||||||||||||||
Sbjct: 173926 atacatttatttattttctgc 173946
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>emb|AL589870.30| Mouse DNA sequence from clone RP23-118A2 on chromosome 2, complete
              sequence
          Length = 202686

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 106    atgcaccagtaacaacaacaa 126
              |||||||||||||||||||||
Sbjct: 130527 atgcaccagtaacaacaacaa 130507
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>ref|XM_868250.1| PREDICTED: Bos taurus similar to Rhabdoid tumor deletion region
           protein 1 (LOC616270), mRNA
          Length = 636

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 310 cagcaggagcacctggattt 329
           ||||||||||||||||||||
Sbjct: 123 cagcaggagcacctggattt 104
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>gb|AC079277.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-65N7, complete
              sequence
          Length = 190328

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 9      ttacatgcatacatttatttattt 32
              |||||| |||||||||||||||||
Sbjct: 181908 ttacatacatacatttatttattt 181931
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>gb|AC145952.3| Pan troglodytes BAC clone RP43-18D16 from 7, complete sequence
          Length = 160354

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     atgcatacatttatttattt 32
              ||||||||||||||||||||
Sbjct: 101657 atgcatacatttatttattt 101676
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>gb|AC139571.2| Mus musculus BAC clone RP24-73K9 from chromosome 15, complete sequence
          Length = 210089

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 10     tacatgcatacatttattta 29
              ||||||||||||||||||||
Sbjct: 135367 tacatgcatacatttattta 135386
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>gb|AC092508.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-133C19, complete
             sequence
          Length = 188694

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    tgcatacatttatttatttt 33
             ||||||||||||||||||||
Sbjct: 49859 tgcatacatttatttatttt 49840
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>emb|BX677675.9| Zebrafish DNA sequence from clone DKEYP-90G12 in linkage group 2,
              complete sequence
          Length = 124301

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 17     atacatttatttattttctgctga 40
              ||||||||||||||||||| ||||
Sbjct: 118710 atacatttatttattttcttctga 118733
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>gb|AC126246.3| Mus musculus BAC clone RP24-354D18 from chromosome 17, complete
             sequence
          Length = 168278

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    atgcatacatttatttattt 32
             ||||||||||||||||||||
Sbjct: 73389 atgcatacatttatttattt 73370
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>gb|BC114013.1| Bos taurus similar to Rhabdoid tumor deletion region protein 1,
           mRNA (cDNA clone MGC:137142 IMAGE:8027195), complete cds
          Length = 1453

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 310 cagcaggagcacctggattt 329
           ||||||||||||||||||||
Sbjct: 693 cagcaggagcacctggattt 674
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>emb|AL161798.23| Human DNA sequence from clone RP11-108M11 on chromosome 10 Contains the
             3' end of a novel gene  (FLJ37306), a novel gene and a
             ribosomal protein S27 (metallopanstimulin 1) (RPS27)
             pseudogene, complete sequence
          Length = 134438

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    catttatttattttctgctg 39
             ||||||||||||||||||||
Sbjct: 13235 catttatttattttctgctg 13216
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>emb|AL035416.7|HS782L23 Human DNA sequence from clone RP4-782L23 on chromosome 1p31.2-33
             Contains the 3' end of a novel gene (FLJ10986), two novel
             genes, the 5' end of the HOOK1 gene for hook homolog 1
             (Drosophila) and a CpG island, complete sequence
          Length = 123925

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 9     ttacatgcatacatttatttattt 32
             |||||| |||||||||||||||||
Sbjct: 53386 ttacatacatacatttatttattt 53363
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>emb|AL590380.9| Mouse DNA sequence from clone RP23-146D23 on chromosome 2, complete
             sequence
          Length = 197008

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    acatgcatacatttatttat 30
             ||||||||||||||||||||
Sbjct: 96874 acatgcatacatttatttat 96855
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>emb|BX465851.5| Zebrafish DNA sequence from clone CH211-215H21 in linkage group 6,
             complete sequence
          Length = 145469

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 10    tacatgcatacatttatttatttt 33
             |||| |||||||||||||||||||
Sbjct: 46202 tacacgcatacatttatttatttt 46179
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>emb|BX530062.10| Zebrafish DNA sequence from clone DKEY-13M1 in linkage group 11,
             complete sequence
          Length = 144678

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    tgcatacatttatttatttt 33
             ||||||||||||||||||||
Sbjct: 47301 tgcatacatttatttatttt 47320
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>gb|AC104864.6| Homo sapiens chromosome 8, clone RP11-324E17, complete sequence
          Length = 168786

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    atacatttatttattttctg 36
             ||||||||||||||||||||
Sbjct: 98461 atacatttatttattttctg 98480
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>gb|AC107464.5| Homo sapiens BAC clone RP11-1191J2 from 4, complete sequence
          Length = 219357

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    catttatttattttctgctg 39
             ||||||||||||||||||||
Sbjct: 37624 catttatttattttctgctg 37643
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>emb|BX323017.6| Zebrafish DNA sequence from clone DKEYP-41F9, complete sequence
          Length = 141192

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 221  cctcaagcttcacatgcctgcatt 244
            |||||||||||| |||||||||||
Sbjct: 5728 cctcaagcttcatatgcctgcatt 5705
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>gb|AC099034.1| Drosophila melanogaster, chromosome 2R, region 58B-58C, BAC clone
              BACR30O14, complete sequence
          Length = 186432

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 10     tacatgcatacatttatttatttt 33
              |||||| |||||||||||||||||
Sbjct: 136789 tacatgtatacatttatttatttt 136766
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>gb|DP000048.1| Cercopithecus aethiops target 106 genomic scaffold
          Length = 583711

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 10     tacatgcatacatttatttatttt 33
              ||||||||||||||||||| ||||
Sbjct: 314336 tacatgcatacatttatttttttt 314359
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>gb|AC040161.5| Homo sapiens chromosome 16 clone CTC-420A11, complete sequence
          Length = 155279

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     tgcatacatttatttatttt 33
              ||||||||||||||||||||
Sbjct: 143735 tgcatacatttatttatttt 143716
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>gb|AC159713.6| Mus musculus 6 BAC RP24-317F6 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 200130

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    ccacccatcccatggactgg 200
              ||||||||||||||||||||
Sbjct: 134234 ccacccatcccatggactgg 134253
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>gb|AC103586.3| Homo sapiens chromosome 3 clone RP11-79P21, complete sequence
          Length = 174912

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   gaaacaccacccatcccatg 194
             ||||||||||||||||||||
Sbjct: 24613 gaaacaccacccatcccatg 24632
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>gb|AC064870.5| Homo sapiens BAC clone RP11-575E20 from 2, complete sequence
          Length = 133478

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     tttattttctgctgatattt 45
              ||||||||||||||||||||
Sbjct: 111256 tttattttctgctgatattt 111275
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>gb|AC104938.7| Homo sapiens chromosome 15, clone CTD-2524L6, complete sequence
          Length = 157267

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 9      ttacatgcatacatttatttattt 32
              |||||| |||||||||||||||||
Sbjct: 141864 ttacatacatacatttatttattt 141841
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>gb|AC069298.8|AC069298 Homo sapiens chromosome 3 clone RP11-56K23, complete sequence
          Length = 158073

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   gaaacaccacccatcccatg 194
             ||||||||||||||||||||
Sbjct: 62704 gaaacaccacccatcccatg 62723
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>emb|BX537355.13| Zebrafish DNA sequence from clone DKEY-18H6 in linkage group 20, complete
              sequence
          Length = 133901

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      tacattacatgcatacattt 24
              ||||||||||||||||||||
Sbjct: 100821 tacattacatgcatacattt 100802
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>emb|X69763.1|STRBCS3 S.tuberosum rbcS3 gene for ribulose-(1,5)-bisphosphate
           carboxylase/oxygenase small subunit
          Length = 1598

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 16  catacatttatttattttct 35
           ||||||||||||||||||||
Sbjct: 860 catacatttatttattttct 841
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>emb|CR926459.7| Zebrafish DNA sequence from clone CH211-260O22 in linkage group 20,
             complete sequence
          Length = 132837

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     tacattacatgcatacattt 24
             ||||||||||||||||||||
Sbjct: 33091 tacattacatgcatacattt 33110
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>emb|BX470164.10| Zebrafish DNA sequence from clone DKEY-24L11 in linkage group 18,
              complete sequence
          Length = 248419

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      ttacatgcatacatttattt 28
              ||||||||||||||||||||
Sbjct: 132991 ttacatgcatacatttattt 132972
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>emb|CR555304.11| Zebrafish DNA sequence from clone DKEY-18C20 in linkage group 11,
             complete sequence
          Length = 78904

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    tgcatacatttatttatttt 33
             ||||||||||||||||||||
Sbjct: 31632 tgcatacatttatttatttt 31613
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>gb|AE003456.3| Drosophila melanogaster chromosome 2R, section 64 of 73 of the complete
             sequence
          Length = 288451

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 10    tacatgcatacatttatttatttt 33
             |||||| |||||||||||||||||
Sbjct: 49567 tacatgtatacatttatttatttt 49544
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>emb|X62695.1|HSCGMP4 H.sapiens DNA for cGMP phosphodiesterase (exons 4-22)
          Length = 27847

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 20   catttatttattttctgctg 39
            ||||||||||||||||||||
Sbjct: 1453 catttatttattttctgctg 1472
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>gb|AF070718.1|AF070718 Homo sapiens BAC clone 529F11 from 8q21, complete sequence
          Length = 166832

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    atgcatacatttatttattt 32
             ||||||||||||||||||||
Sbjct: 71886 atgcatacatttatttattt 71867
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>gb|AC153418.1| Mus musculus BAC clone RP23-437E18 from 17, complete sequence
          Length = 211386

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    atgcatacatttatttattt 32
             ||||||||||||||||||||
Sbjct: 61007 atgcatacatttatttattt 61026
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>gb|AC167706.2| Reniera sp. JGI-2005 clone JGIBAYC-9H10, complete sequence
          Length = 41616

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    tacatgcatacatttattta 29
             ||||||||||||||||||||
Sbjct: 34207 tacatgcatacatttattta 34226
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>gb|AC145978.3| Gallus gallus BAC clone CH261-10K7 from chromosome unknown, complete
             sequence
          Length = 216402

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 197   ctggactagctttcatgcat 216
             ||||||||||||||||||||
Sbjct: 83875 ctggactagctttcatgcat 83856
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>gb|AC145947.3| Gallus gallus BAC clone CH261-24O5 from chromosome unknown, complete
              sequence
          Length = 233033

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 197    ctggactagctttcatgcat 216
              ||||||||||||||||||||
Sbjct: 102827 ctggactagctttcatgcat 102846
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>gb|AC002446.1|AC002446 Drosophila melanogaster (P1 DS06754 (D83)) DNA sequence, complete
             sequence
          Length = 50978

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 10    tacatgcatacatttatttatttt 33
             |||||| |||||||||||||||||
Sbjct: 40661 tacatgtatacatttatttatttt 40638
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>emb|CR385047.19| Zebrafish DNA sequence from clone DKEY-221N16 in linkage group 18,
              complete sequence
          Length = 193827

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      ttacatgcatacatttattt 28
              ||||||||||||||||||||
Sbjct: 158889 ttacatgcatacatttattt 158870
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>dbj|AP005638.2| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-61B13, complete
             sequence
          Length = 83280

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 9     ttacatgcatacatttatttattt 32
             |||||| |||||||||||||||||
Sbjct: 54058 ttacatacatacatttatttattt 54035
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>emb|Z79381.1|HSPA6C10 H.sapiens flow-sorted chromosome 6 TaqI fragment, SC6pA6C10
          Length = 461

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 14  tgcatacatttatttatttt 33
           ||||||||||||||||||||
Sbjct: 321 tgcatacatttatttatttt 302
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>emb|AL358332.3|CNS05TE3 Human chromosome 14 DNA sequence BAC R-255G12 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 161261

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 9     ttacatgcatacatttatttattt 32
             |||||| |||||||||||||||||
Sbjct: 33016 ttacatacatacatttatttattt 32993
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>dbj|AP000347.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone KB113H7
          Length = 104660

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 9     ttacatgcatacatttatttattt 32
             |||||| |||||||||||||||||
Sbjct: 28278 ttacatacatacatttatttattt 28255
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>dbj|AP000346.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone KB1572G7
          Length = 151600

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 9      ttacatgcatacatttatttattt 32
              |||||| |||||||||||||||||
Sbjct: 141309 ttacatacatacatttatttattt 141286
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>emb|AL606984.20| Mouse DNA sequence from clone RP23-81D5 on chromosome 4, complete
            sequence
          Length = 104368

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  agtatgaaaaactgaagcag 312
            ||||||||||||||||||||
Sbjct: 3708 agtatgaaaaactgaagcag 3689
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>dbj|AP004606.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-138O22, complete
            sequences
          Length = 173185

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 9    ttacatgcatacatttatttattt 32
            |||||| |||||||||||||||||
Sbjct: 7088 ttacatacatacatttatttattt 7065


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,244,298
Number of Sequences: 3902068
Number of extensions: 6244298
Number of successful extensions: 136314
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 136069
Number of HSP's gapped (non-prelim): 245
length of query: 337
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 315
effective length of database: 17,147,199,772
effective search space: 5401367928180
effective search space used: 5401367928180
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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