ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast52a07 |
|---|---|
| Clone Library Name | barley_pub |
>SGS3_DROYA (P13728) Salivary glue protein Sgs-3 precursor| Length = 263 Score = 33.1 bits (74), Expect = 0.38 Identities = 18/53 (33%), Positives = 23/53 (43%) Frame = +1 Query: 187 CCGVNPTCAPTKLSDIAMAGASCQAPPTWPSDDLPLTTRRD*KRPPTATSPPT 345 C PTCAPT + A PP P D P TT+R ++ T + T Sbjct: 36 CQTTVPTCAPTTTTTTTTTCAPPTRPPPPPCTDAPTTTKRTTEKSTTRRTTTT 88
>MSRAB_VIBCH (Q9KLX6) Peptide methionine sulfoxide reductase msrA/msrB (EC| 1.8.4.6) [Includes: Peptide methionine sulfoxide reductase msrA (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase); Peptide methionine sulfoxide reductase msrB] Length = 378 Score = 29.6 bits (65), Expect = 4.2 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = -2 Query: 314 F*SRLVVRGRSSDGHVGGAWHDAPA-MAMSLSLVGAHVGFTPQQRLLIQ 171 F +R VR R +D H+G ++D PA + + A + F P+Q + Q Sbjct: 320 FYTRTEVRSRFADSHLGHVFNDGPAPTGLRYCMNSAAMRFIPKQEMAAQ 368
>BSN_RAT (O88778) Bassoon protein| Length = 3937 Score = 29.6 bits (65), Expect = 4.2 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +1 Query: 199 NPTCAPTKLSDIAMAGASCQAPPTWPSDDLP 291 +PT +P+KL A A S Q P PS D+P Sbjct: 1480 SPTFSPSKLGPRATAEFSTQTPSLTPSSDIP 1510
>RIMB2_HUMAN (O15034) RIM-binding protein 2 (RIM-BP2)| Length = 1052 Score = 29.6 bits (65), Expect = 4.2 Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 9/110 (8%) Frame = +2 Query: 41 IKTRSQEAKQAPTRINFLTESTQRVQSRQQI----LLLLDGKETRPYPESVAVAAA*TP- 205 ++ RS EAK R L+ + V S LL+ RP P+S +A++ P Sbjct: 552 VRLRSLEAKGVTVRT--LSAQGESVDSAVAAVPPELLVPPTPHPRPAPQSKPLASSGVPE 609 Query: 206 ----HARPLSSATLPWQEHHAKHHPHGHLTTCP*PRDEIRNDPQRLLLPP 343 H P + W++ A HGH+ P P R+L P Sbjct: 610 TKDEHLGPHARMDEAWEQSRAPGPVHGHMLEPPVGPGRRSPSPSRILPQP 659
>PARM1_MOUSE (Q923D3) Protein PARM-1 precursor| Length = 296 Score = 29.3 bits (64), Expect = 5.5 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = +2 Query: 203 PHARPLSSATLPWQEHHAKHHPHGHLTTCP*PRDEIRNDPQ 325 P P++ A+ P +EH + H P H+T P P+++ D + Sbjct: 177 PTEAPMAPAS-PTEEHSSSHTPTSHVTAEPVPKEKSPQDTE 216
>EVL_HUMAN (Q9UI08) Ena/VASP-like protein (Ena/vasodilator stimulated| phosphoprotein-like) Length = 416 Score = 29.3 bits (64), Expect = 5.5 Identities = 17/56 (30%), Positives = 20/56 (35%) Frame = +1 Query: 175 ISSRCCGVNPTCAPTKLSDIAMAGASCQAPPTWPSDDLPLTTRRD*KRPPTATSPP 342 + R P P S A A SC PP P +P PPT +PP Sbjct: 153 LERRTSATGPILPPGHPSSAASAPVSCSGPPPPPPPPVP--------PPPTGATPP 200
>EVL_PONPY (Q5R896) Ena/VASP-like protein (Ena/vasodilator stimulated| phosphoprotein-like) Length = 422 Score = 29.3 bits (64), Expect = 5.5 Identities = 17/56 (30%), Positives = 20/56 (35%) Frame = +1 Query: 175 ISSRCCGVNPTCAPTKLSDIAMAGASCQAPPTWPSDDLPLTTRRD*KRPPTATSPP 342 + R P P S A A SC PP P +P PPT +PP Sbjct: 159 LERRTSATGPILPPGHPSSAASAPVSCSGPPPPPPPPVP--------PPPTGATPP 206
>VACA2_HELPY (Q48245) Vacuolating cytotoxin precursor| Length = 1287 Score = 28.9 bits (63), Expect = 7.2 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = +1 Query: 46 DKIPRSQAGPYTNQFPNREY 105 DK+ R QAG N+FPN+EY Sbjct: 79 DKVWRIQAGKGFNEFPNKEY 98
>EVL_RAT (O08719) Ena/VASP-like protein (Ena/vasodilator stimulated| phosphoprotein-like) Length = 393 Score = 28.9 bits (63), Expect = 7.2 Identities = 17/56 (30%), Positives = 21/56 (37%) Frame = +1 Query: 175 ISSRCCGVNPTCAPTKLSDIAMAGASCQAPPTWPSDDLPLTTRRD*KRPPTATSPP 342 + R P P S A A SC PP P +P PPT ++PP Sbjct: 151 LERRISATGPILPPGHPSSAASATFSCSGPPPPPPPPVP--------PPPTGSTPP 198
>VACA4_HELPY (Q48258) Vacuolating cytotoxin precursor| Length = 1291 Score = 28.9 bits (63), Expect = 7.2 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = +1 Query: 46 DKIPRSQAGPYTNQFPNREY 105 DK+ R QAG N+FPN+EY Sbjct: 79 DKVWRIQAGKGFNEFPNKEY 98
>VACA1_HELPY (Q48247) Vacuolating cytotoxin precursor| Length = 1296 Score = 28.9 bits (63), Expect = 7.2 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = +1 Query: 46 DKIPRSQAGPYTNQFPNREY 105 DK+ R QAG N+FPN+EY Sbjct: 79 DKVWRIQAGKGFNEFPNKEY 98
>SGS3_DROSI (P13729) Salivary glue protein Sgs-3 precursor| Length = 217 Score = 28.9 bits (63), Expect = 7.2 Identities = 18/58 (31%), Positives = 26/58 (44%) Frame = +1 Query: 160 TTVS*ISSRCCGVNPTCAPTKLSDIAMAGASCQAPPTWPSDDLPLTTRRD*KRPPTAT 333 TT + ++R PTC T + + +APPT P+ TT + PPT T Sbjct: 57 TTTTTTTTRAPPTKPTCKSTSTTT-----TTTRAPPTKPTCKSTSTTTTTTRAPPTTT 109
>VACA_HELPY (P55981) Vacuolating cytotoxin precursor| Length = 1290 Score = 28.9 bits (63), Expect = 7.2 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = +1 Query: 46 DKIPRSQAGPYTNQFPNREY 105 DK+ R QAG N+FPN+EY Sbjct: 79 DKVWRIQAGKGFNEFPNKEY 98
>VACA_HELPJ (Q9ZKW5) Vacuolating cytotoxin precursor| Length = 1288 Score = 28.9 bits (63), Expect = 7.2 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = +1 Query: 46 DKIPRSQAGPYTNQFPNREY 105 DK+ R QAG N+FPN+EY Sbjct: 79 DKVWRIQAGKGFNEFPNKEY 98
>UBP7_YEAST (P40453) Ubiquitin carboxyl-terminal hydrolase 7 (EC 3.1.2.15)| (Ubiquitin thioesterase 7) (Ubiquitin-specific-processing protease 7) (Deubiquitinating enzyme 7) Length = 1071 Score = 28.5 bits (62), Expect = 9.4 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = +1 Query: 262 PPTWPSDDLPLTTRRD*KRPPTATSPPT 345 PP+W DLP+ R+ PP + P T Sbjct: 499 PPSWKPPDLPIRLRKRPPPPPPVSMPTT 526 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,057,248 Number of Sequences: 219361 Number of extensions: 1343381 Number of successful extensions: 4082 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3667 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4015 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
