| Clone Name | rbast52a07 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL606639.3|OSJN00072 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020J04, complete sequence Length = 164567 Score = 61.9 bits (31), Expect = 2e-06 Identities = 50/54 (92%), Gaps = 3/54 (5%) Strand = Plus / Minus Query: 44 aagacaagatcccaagaagccaagcagg--cccctacacg-aatcaatttccta 94 |||||||||||| ||||||||||||||| |||||||||| ||||||||||||| Sbjct: 126333 aagacaagatccgaagaagccaagcaggcccccctacacgaaatcaatttccta 126280
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 61.9 bits (31), Expect = 2e-06 Identities = 50/54 (92%), Gaps = 3/54 (5%) Strand = Plus / Minus Query: 44 aagacaagatcccaagaagccaagcagg--cccctacacg-aatcaatttccta 94 |||||||||||| ||||||||||||||| |||||||||| ||||||||||||| Sbjct: 29059679 aagacaagatccgaagaagccaagcaggcccccctacacgaaatcaatttccta 29059626
>dbj|AK102667.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101N13, full insert sequence Length = 2375 Score = 61.9 bits (31), Expect = 2e-06 Identities = 50/54 (92%), Gaps = 3/54 (5%) Strand = Plus / Minus Query: 44 aagacaagatcccaagaagccaagcagg--cccctacacg-aatcaatttccta 94 |||||||||||| ||||||||||||||| |||||||||| ||||||||||||| Sbjct: 2353 aagacaagatccgaagaagccaagcaggcccccctacacgaaatcaatttccta 2300
>gb|BT023963.1| Zea mays clone EL01N0413F10 mRNA sequence Length = 2088 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 44 aagacaagatcccaagaagccaagcaggcccct 76 |||||| ||||||| |||||||||||||||||| Sbjct: 2012 aagacaggatcccaggaagccaagcaggcccct 1980
>gb|AC102647.8| Mus musculus chromosome 10, clone RP23-269A24, complete sequence Length = 201670 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 96 cagagagtacacagagagtacag 118 ||||||||||||||||||||||| Sbjct: 23785 cagagagtacacagagagtacag 23807
>gb|AC153823.5| Mus musculus 10 BAC RP23-11M21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 210101 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 96 cagagagtacacagagagtacag 118 ||||||||||||||||||||||| Sbjct: 124309 cagagagtacacagagagtacag 124331
>gb|AC117234.4| Mus musculus BAC clone RP23-410J2 from chromosome 6, complete sequence Length = 193027 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 acagagagtacacagagagta 115 ||||||||||||||||||||| Sbjct: 149929 acagagagtacacagagagta 149949
>emb|AL157878.11| Human DNA sequence from clone RP11-51B13 on chromosome 13q31.1-32.1 Contains 2 novel genes, complete sequence Length = 118873 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 26 atttgtaaaaatggtattaag 46 ||||||||||||||||||||| Sbjct: 27202 atttgtaaaaatggtattaag 27222
>emb|BX897736.7| Zebrafish DNA sequence from clone CH211-181B15 in linkage group 17, complete sequence Length = 141987 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 250 tcatgccaagcaccacccaca 270 ||||||||||||||||||||| Sbjct: 27309 tcatgccaagcaccacccaca 27329
>gb|AC093861.3| Homo sapiens BAC clone RP11-542I3 from 4, complete sequence Length = 203720 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 96 cagagagtacacagagagtacagag 120 |||||||||||||||||||| |||| Sbjct: 148627 cagagagtacacagagagtagagag 148651
>gb|BC001544.1| Homo sapiens KIAA0971, mRNA (cDNA clone MGC:4908 IMAGE:3454628), complete cds Length = 2908 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 agacatgcatttgtaaaaat 37 |||||||||||||||||||| Sbjct: 2218 agacatgcatttgtaaaaat 2237
>ref|NM_014929.2| Homo sapiens KIAA0971 (KIAA0971), mRNA Length = 2908 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 agacatgcatttgtaaaaat 37 |||||||||||||||||||| Sbjct: 2218 agacatgcatttgtaaaaat 2237
>emb|AL162588.22| Human DNA sequence from clone RP11-349F12 on chromosome 9 Contains a novel gene (FLJ38524), the ZFP37 for zinc finger protein 37 and two CpG islands, complete sequence Length = 76606 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 ggcaggagcatcatgccaag 259 |||||||||||||||||||| Sbjct: 61312 ggcaggagcatcatgccaag 61331
>emb|CR860242.1| Pongo pygmaeus mRNA; cDNA DKFZp469I0419 (from clone DKFZp469I0419) Length = 2338 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 agacatgcatttgtaaaaat 37 |||||||||||||||||||| Sbjct: 2268 agacatgcatttgtaaaaat 2287
>emb|CR608462.1| full-length cDNA clone CL0BA008ZE02 of Placenta of Homo sapiens (human) Length = 1900 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 agacatgcatttgtaaaaat 37 |||||||||||||||||||| Sbjct: 1787 agacatgcatttgtaaaaat 1806
>dbj|AK001315.1| Homo sapiens cDNA FLJ10453 fis, clone NT2RP1000980 Length = 1516 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 agacatgcatttgtaaaaat 37 |||||||||||||||||||| Sbjct: 842 agacatgcatttgtaaaaat 861
>dbj|AK021557.1| Homo sapiens cDNA FLJ11495 fis, clone HEMBA1001950, highly similar to Homo sapiens mRNA for KIAA0971 protein Length = 2415 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 agacatgcatttgtaaaaat 37 |||||||||||||||||||| Sbjct: 2371 agacatgcatttgtaaaaat 2390
>dbj|AK001516.1| Homo sapiens cDNA FLJ10654 fis, clone NT2RP2005901, highly similar to Homo sapiens mRNA for KIAA0971 protein Length = 2936 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 agacatgcatttgtaaaaat 37 |||||||||||||||||||| Sbjct: 2258 agacatgcatttgtaaaaat 2277
>dbj|AB169214.1| Macaca fascicularis testis cDNA, clone: QtsA-18055, similar to human KIAA0971 protein (KIAA0971), mRNA, RefSeq: NM_014929.2 Length = 2500 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 agacatgcatttgtaaaaat 37 |||||||||||||||||||| Sbjct: 2352 agacatgcatttgtaaaaat 2371
>gb|AC154217.2| Mus musculus BAC clone RP24-357L19 from chromosome 17, complete sequence Length = 183535 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 acatgcatttgtaaaaatgg 39 |||||||||||||||||||| Sbjct: 28706 acatgcatttgtaaaaatgg 28687
>gb|AC008269.4| Homo sapiens BAC clone RP11-95H11 from 2, complete sequence Length = 161935 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 agacatgcatttgtaaaaat 37 |||||||||||||||||||| Sbjct: 72785 agacatgcatttgtaaaaat 72804
>gb|AF223470.1|AF223470 Homo sapiens KIAA0971-I protein (KIAA0971-I) mRNA, complete cds Length = 2434 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 agacatgcatttgtaaaaat 37 |||||||||||||||||||| Sbjct: 2345 agacatgcatttgtaaaaat 2364
>dbj|AB010072.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6 Length = 83698 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 aatcaatttcctaacagaga 101 |||||||||||||||||||| Sbjct: 72146 aatcaatttcctaacagaga 72127
>dbj|AB023188.1| Homo sapiens mRNA for KIAA0971 protein, partial cds Length = 4999 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 agacatgcatttgtaaaaat 37 |||||||||||||||||||| Sbjct: 4883 agacatgcatttgtaaaaat 4902
>gb|AC154475.2| Mus musculus BAC clone RP24-130B12 from 17, complete sequence Length = 117680 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 acatgcatttgtaaaaatgg 39 |||||||||||||||||||| Sbjct: 5826 acatgcatttgtaaaaatgg 5845
>emb|AL669913.15| Mouse DNA sequence from clone RP23-479C2 on chromosome 2, complete sequence Length = 184221 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 101 agtacacagagagtacagagcagg 124 ||||||| |||||||||||||||| Sbjct: 145490 agtacactgagagtacagagcagg 145513
>emb|AL390254.6|CNS06C7M Human chromosome 14 DNA sequence BAC R-991C1 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 177792 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 gcatttgtaaaaatggtatt 43 |||||||||||||||||||| Sbjct: 101210 gcatttgtaaaaatggtatt 101229 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,595,686 Number of Sequences: 3902068 Number of extensions: 3595686 Number of successful extensions: 63828 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63756 Number of HSP's gapped (non-prelim): 72 length of query: 477 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 455 effective length of database: 17,147,199,772 effective search space: 7801975896260 effective search space used: 7801975896260 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)