ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast52a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL606639.3|OSJN00072 Oryza sativa genomic DNA, chromosome 4,... 62 2e-06
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
3dbj|AK102667.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
4gb|BT023963.1| Zea mays clone EL01N0413F10 mRNA sequence 50 0.007
5gb|AC102647.8| Mus musculus chromosome 10, clone RP23-269A24, co... 46 0.10
6gb|AC153823.5| Mus musculus 10 BAC RP23-11M21 (Roswell Park Canc... 46 0.10
7gb|AC117234.4| Mus musculus BAC clone RP23-410J2 from chromosome... 42 1.6
8emb|AL157878.11| Human DNA sequence from clone RP11-51B13 on chr... 42 1.6
9emb|BX897736.7| Zebrafish DNA sequence from clone CH211-181B15 i... 42 1.6
10gb|AC093861.3| Homo sapiens BAC clone RP11-542I3 from 4, complet... 42 1.6
11gb|BC001544.1| Homo sapiens KIAA0971, mRNA (cDNA clone MGC:4908 ... 40 6.4
12ref|NM_014929.2| Homo sapiens KIAA0971 (KIAA0971), mRNA 40 6.4
13emb|AL162588.22| Human DNA sequence from clone RP11-349F12 on ch... 40 6.4
14emb|CR860242.1| Pongo pygmaeus mRNA; cDNA DKFZp469I0419 (from cl... 40 6.4
15emb|CR608462.1| full-length cDNA clone CL0BA008ZE02 of Placenta ... 40 6.4
16dbj|AK001315.1| Homo sapiens cDNA FLJ10453 fis, clone NT2RP1000980 40 6.4
17dbj|AK021557.1| Homo sapiens cDNA FLJ11495 fis, clone HEMBA10019... 40 6.4
18dbj|AK001516.1| Homo sapiens cDNA FLJ10654 fis, clone NT2RP20059... 40 6.4
19dbj|AB169214.1| Macaca fascicularis testis cDNA, clone: QtsA-180... 40 6.4
20gb|AC154217.2| Mus musculus BAC clone RP24-357L19 from chromosom... 40 6.4
21gb|AC008269.4| Homo sapiens BAC clone RP11-95H11 from 2, complet... 40 6.4
22gb|AF223470.1|AF223470 Homo sapiens KIAA0971-I protein (KIAA0971... 40 6.4
23dbj|AB010072.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 6.4
24dbj|AB023188.1| Homo sapiens mRNA for KIAA0971 protein, partial cds 40 6.4
25gb|AC154475.2| Mus musculus BAC clone RP24-130B12 from 17, compl... 40 6.4
26emb|AL669913.15| Mouse DNA sequence from clone RP23-479C2 on chr... 40 6.4
27emb|AL390254.6|CNS06C7M Human chromosome 14 DNA sequence BAC R-9... 40 6.4

>emb|AL606639.3|OSJN00072 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020J04,
              complete sequence
          Length = 164567

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 50/54 (92%), Gaps = 3/54 (5%)
 Strand = Plus / Minus

                                                                    
Query: 44     aagacaagatcccaagaagccaagcagg--cccctacacg-aatcaatttccta 94
              |||||||||||| |||||||||||||||  |||||||||| |||||||||||||
Sbjct: 126333 aagacaagatccgaagaagccaagcaggcccccctacacgaaatcaatttccta 126280



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 50/54 (92%), Gaps = 3/54 (5%)
 Strand = Plus / Minus

                                                                      
Query: 44       aagacaagatcccaagaagccaagcagg--cccctacacg-aatcaatttccta 94
                |||||||||||| |||||||||||||||  |||||||||| |||||||||||||
Sbjct: 29059679 aagacaagatccgaagaagccaagcaggcccccctacacgaaatcaatttccta 29059626



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>dbj|AK102667.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101N13, full
            insert sequence
          Length = 2375

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 50/54 (92%), Gaps = 3/54 (5%)
 Strand = Plus / Minus

                                                                  
Query: 44   aagacaagatcccaagaagccaagcagg--cccctacacg-aatcaatttccta 94
            |||||||||||| |||||||||||||||  |||||||||| |||||||||||||
Sbjct: 2353 aagacaagatccgaagaagccaagcaggcccccctacacgaaatcaatttccta 2300



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>gb|BT023963.1| Zea mays clone EL01N0413F10 mRNA sequence
          Length = 2088

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 44   aagacaagatcccaagaagccaagcaggcccct 76
            |||||| ||||||| ||||||||||||||||||
Sbjct: 2012 aagacaggatcccaggaagccaagcaggcccct 1980



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>gb|AC102647.8| Mus musculus chromosome 10, clone RP23-269A24, complete sequence
          Length = 201670

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 96    cagagagtacacagagagtacag 118
             |||||||||||||||||||||||
Sbjct: 23785 cagagagtacacagagagtacag 23807



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>gb|AC153823.5| Mus musculus 10 BAC RP23-11M21 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 210101

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 96     cagagagtacacagagagtacag 118
              |||||||||||||||||||||||
Sbjct: 124309 cagagagtacacagagagtacag 124331



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>gb|AC117234.4| Mus musculus BAC clone RP23-410J2 from chromosome 6, complete sequence
          Length = 193027

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 95     acagagagtacacagagagta 115
              |||||||||||||||||||||
Sbjct: 149929 acagagagtacacagagagta 149949



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>emb|AL157878.11| Human DNA sequence from clone RP11-51B13 on chromosome 13q31.1-32.1
             Contains 2 novel genes, complete sequence
          Length = 118873

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 26    atttgtaaaaatggtattaag 46
             |||||||||||||||||||||
Sbjct: 27202 atttgtaaaaatggtattaag 27222



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>emb|BX897736.7| Zebrafish DNA sequence from clone CH211-181B15 in linkage group 17,
             complete sequence
          Length = 141987

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 250   tcatgccaagcaccacccaca 270
             |||||||||||||||||||||
Sbjct: 27309 tcatgccaagcaccacccaca 27329



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>gb|AC093861.3| Homo sapiens BAC clone RP11-542I3 from 4, complete sequence
          Length = 203720

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 96     cagagagtacacagagagtacagag 120
              |||||||||||||||||||| ||||
Sbjct: 148627 cagagagtacacagagagtagagag 148651



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>gb|BC001544.1| Homo sapiens KIAA0971, mRNA (cDNA clone MGC:4908 IMAGE:3454628),
            complete cds
          Length = 2908

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   agacatgcatttgtaaaaat 37
            ||||||||||||||||||||
Sbjct: 2218 agacatgcatttgtaaaaat 2237



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>ref|NM_014929.2| Homo sapiens KIAA0971 (KIAA0971), mRNA
          Length = 2908

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   agacatgcatttgtaaaaat 37
            ||||||||||||||||||||
Sbjct: 2218 agacatgcatttgtaaaaat 2237



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>emb|AL162588.22| Human DNA sequence from clone RP11-349F12 on chromosome 9 Contains a
             novel gene (FLJ38524), the ZFP37 for zinc finger protein
             37 and two CpG islands, complete sequence
          Length = 76606

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   ggcaggagcatcatgccaag 259
             ||||||||||||||||||||
Sbjct: 61312 ggcaggagcatcatgccaag 61331



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>emb|CR860242.1| Pongo pygmaeus mRNA; cDNA DKFZp469I0419 (from clone DKFZp469I0419)
          Length = 2338

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   agacatgcatttgtaaaaat 37
            ||||||||||||||||||||
Sbjct: 2268 agacatgcatttgtaaaaat 2287



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>emb|CR608462.1| full-length cDNA clone CL0BA008ZE02 of Placenta of Homo sapiens
            (human)
          Length = 1900

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   agacatgcatttgtaaaaat 37
            ||||||||||||||||||||
Sbjct: 1787 agacatgcatttgtaaaaat 1806



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>dbj|AK001315.1| Homo sapiens cDNA FLJ10453 fis, clone NT2RP1000980
          Length = 1516

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 18  agacatgcatttgtaaaaat 37
           ||||||||||||||||||||
Sbjct: 842 agacatgcatttgtaaaaat 861



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>dbj|AK021557.1| Homo sapiens cDNA FLJ11495 fis, clone HEMBA1001950, highly similar to
            Homo sapiens mRNA for KIAA0971 protein
          Length = 2415

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   agacatgcatttgtaaaaat 37
            ||||||||||||||||||||
Sbjct: 2371 agacatgcatttgtaaaaat 2390



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>dbj|AK001516.1| Homo sapiens cDNA FLJ10654 fis, clone NT2RP2005901, highly similar to
            Homo sapiens mRNA for KIAA0971 protein
          Length = 2936

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   agacatgcatttgtaaaaat 37
            ||||||||||||||||||||
Sbjct: 2258 agacatgcatttgtaaaaat 2277



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>dbj|AB169214.1| Macaca fascicularis testis cDNA, clone: QtsA-18055, similar to human
            KIAA0971 protein (KIAA0971), mRNA, RefSeq: NM_014929.2
          Length = 2500

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   agacatgcatttgtaaaaat 37
            ||||||||||||||||||||
Sbjct: 2352 agacatgcatttgtaaaaat 2371



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>gb|AC154217.2| Mus musculus BAC clone RP24-357L19 from chromosome 17, complete
             sequence
          Length = 183535

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    acatgcatttgtaaaaatgg 39
             ||||||||||||||||||||
Sbjct: 28706 acatgcatttgtaaaaatgg 28687



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>gb|AC008269.4| Homo sapiens BAC clone RP11-95H11 from 2, complete sequence
          Length = 161935

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    agacatgcatttgtaaaaat 37
             ||||||||||||||||||||
Sbjct: 72785 agacatgcatttgtaaaaat 72804



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>gb|AF223470.1|AF223470 Homo sapiens KIAA0971-I protein (KIAA0971-I) mRNA, complete cds
          Length = 2434

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   agacatgcatttgtaaaaat 37
            ||||||||||||||||||||
Sbjct: 2345 agacatgcatttgtaaaaat 2364



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>dbj|AB010072.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6
          Length = 83698

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    aatcaatttcctaacagaga 101
             ||||||||||||||||||||
Sbjct: 72146 aatcaatttcctaacagaga 72127



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>dbj|AB023188.1| Homo sapiens mRNA for KIAA0971 protein, partial cds
          Length = 4999

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   agacatgcatttgtaaaaat 37
            ||||||||||||||||||||
Sbjct: 4883 agacatgcatttgtaaaaat 4902



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>gb|AC154475.2| Mus musculus BAC clone RP24-130B12 from 17, complete sequence
          Length = 117680

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 20   acatgcatttgtaaaaatgg 39
            ||||||||||||||||||||
Sbjct: 5826 acatgcatttgtaaaaatgg 5845



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>emb|AL669913.15| Mouse DNA sequence from clone RP23-479C2 on chromosome 2, complete
              sequence
          Length = 184221

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 101    agtacacagagagtacagagcagg 124
              ||||||| ||||||||||||||||
Sbjct: 145490 agtacactgagagtacagagcagg 145513



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>emb|AL390254.6|CNS06C7M Human chromosome 14 DNA sequence BAC R-991C1 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 177792

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     gcatttgtaaaaatggtatt 43
              ||||||||||||||||||||
Sbjct: 101210 gcatttgtaaaaatggtatt 101229


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,595,686
Number of Sequences: 3902068
Number of extensions: 3595686
Number of successful extensions: 63828
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63756
Number of HSP's gapped (non-prelim): 72
length of query: 477
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 455
effective length of database: 17,147,199,772
effective search space: 7801975896260
effective search space used: 7801975896260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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