ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbast52a05 |
|---|---|
| Clone Library Name | barley_pub |
>STAD_SOLTU (P46253) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 393 Score = 47.8 bits (112), Expect = 7e-06 Identities = 22/31 (70%), Positives = 24/31 (77%) Frame = +3 Query: 195 VTHSMPPEKAEVFQSLRGWAGSSLLPLLRPV 287 VTHSMPPEK EVF SLR WA +LL L+PV Sbjct: 58 VTHSMPPEKIEVFDSLRDWAAQNLLVHLKPV 88
>STAD_SOLCO (Q41319) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 393 Score = 47.4 bits (111), Expect = 1e-05 Identities = 20/31 (64%), Positives = 25/31 (80%) Frame = +3 Query: 195 VTHSMPPEKAEVFQSLRGWAGSSLLPLLRPV 287 VTHSMPPEK E+F SL GWA +++L L+PV Sbjct: 58 VTHSMPPEKREIFDSLHGWADNNILVHLKPV 88
>STAD_GOSHI (Q42770) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 397 Score = 45.4 bits (106), Expect = 4e-05 Identities = 18/31 (58%), Positives = 25/31 (80%) Frame = +3 Query: 195 VTHSMPPEKAEVFQSLRGWAGSSLLPLLRPV 287 +THSMPP K E+F+SL GWA +++L L+PV Sbjct: 61 ITHSMPPHKIEIFKSLEGWAENNILTHLKPV 91
>STAD_SOYBN (Q42807) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 411 Score = 45.1 bits (105), Expect = 5e-05 Identities = 19/31 (61%), Positives = 24/31 (77%) Frame = +3 Query: 195 VTHSMPPEKAEVFQSLRGWAGSSLLPLLRPV 287 VTHSMPP+K E+FQSL WA ++L L+PV Sbjct: 56 VTHSMPPQKIEIFQSLEDWAEENILAHLKPV 86
>STAD_CARTI (P22243) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 396 Score = 45.1 bits (105), Expect = 5e-05 Identities = 18/31 (58%), Positives = 25/31 (80%) Frame = +3 Query: 195 VTHSMPPEKAEVFQSLRGWAGSSLLPLLRPV 287 VTHSMPP+K E+F+S+ GWA ++L L+PV Sbjct: 61 VTHSMPPQKIEIFKSIEGWAEQNILVHLKPV 91
>STAD_SPIOL (P28645) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 399 Score = 44.7 bits (104), Expect = 6e-05 Identities = 20/31 (64%), Positives = 24/31 (77%) Frame = +3 Query: 195 VTHSMPPEKAEVFQSLRGWAGSSLLPLLRPV 287 VTHSMP EK E+F+SL GWA +LL L+PV Sbjct: 64 VTHSMPQEKIEIFKSLEGWAEENLLVHLKPV 94
>STAD_CUCSA (P32061) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 396 Score = 43.9 bits (102), Expect = 1e-04 Identities = 19/31 (61%), Positives = 24/31 (77%) Frame = +3 Query: 195 VTHSMPPEKAEVFQSLRGWAGSSLLPLLRPV 287 VTHSMPP+K E+F+SL WA +LL L+PV Sbjct: 61 VTHSMPPQKMEIFKSLEDWAEENLLVHLKPV 91
>STAD_SIMCH (Q01753) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 398 Score = 43.9 bits (102), Expect = 1e-04 Identities = 18/30 (60%), Positives = 24/30 (80%) Frame = +3 Query: 198 THSMPPEKAEVFQSLRGWAGSSLLPLLRPV 287 THSMPP+K E+F+SL GWA ++L L+PV Sbjct: 64 THSMPPQKIEIFKSLEGWAEENVLVHLKPV 93
>STAD_ELAGV (O24428) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 393 Score = 43.5 bits (101), Expect = 1e-04 Identities = 18/31 (58%), Positives = 25/31 (80%) Frame = +3 Query: 195 VTHSMPPEKAEVFQSLRGWAGSSLLPLLRPV 287 VTHSMPP+K E+F+SL WA +++L L+PV Sbjct: 58 VTHSMPPQKIEIFKSLEDWAENNILVHLKPV 88
>STAD_HELAN (Q96456) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 396 Score = 43.1 bits (100), Expect = 2e-04 Identities = 17/31 (54%), Positives = 25/31 (80%) Frame = +3 Query: 195 VTHSMPPEKAEVFQSLRGWAGSSLLPLLRPV 287 V HSMPP+K E+F+S+ GWA +++L L+PV Sbjct: 61 VLHSMPPQKIEIFKSMEGWAENNILVHLKPV 91
>STAD_RICCO (P22337) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) (Delta(9) stearoyl-acyl carrier protein desaturase) Length = 396 Score = 42.7 bits (99), Expect = 2e-04 Identities = 18/31 (58%), Positives = 24/31 (77%) Frame = +3 Query: 195 VTHSMPPEKAEVFQSLRGWAGSSLLPLLRPV 287 VTHSMPP+K E+F+SL WA ++L L+PV Sbjct: 61 VTHSMPPQKIEIFKSLDNWAEENILVHLKPV 91
>STAD_ORYSA (Q40731) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 390 Score = 42.7 bits (99), Expect = 2e-04 Identities = 18/31 (58%), Positives = 24/31 (77%) Frame = +3 Query: 195 VTHSMPPEKAEVFQSLRGWAGSSLLPLLRPV 287 V HS+PP+K E+F SL+ WA +LL LL+PV Sbjct: 55 VKHSLPPQKREIFDSLQPWAKENLLNLLKPV 85
>STAD_OLEEU (Q43593) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 390 Score = 39.7 bits (91), Expect = 0.002 Identities = 17/31 (54%), Positives = 22/31 (70%) Frame = +3 Query: 195 VTHSMPPEKAEVFQSLRGWAGSSLLPLLRPV 287 VTHS+ PEK E+F SL WA ++L LL+ V Sbjct: 55 VTHSLAPEKREIFNSLNNWAQENILVLLKDV 85
>STAD_BRANA (P29108) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 398 Score = 38.5 bits (88), Expect = 0.004 Identities = 16/31 (51%), Positives = 22/31 (70%) Frame = +3 Query: 195 VTHSMPPEKAEVFQSLRGWAGSSLLPLLRPV 287 V HSMPP+K E+F+S+ WA +LL L+ V Sbjct: 63 VLHSMPPQKIEIFKSMEDWAEQNLLTQLKDV 93
>STADS_BRANA (Q01771) Acyl-[acyl-carrier-protein] desaturase, seed specific,| chloroplast precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 399 Score = 35.8 bits (81), Expect = 0.029 Identities = 16/31 (51%), Positives = 22/31 (70%) Frame = +3 Query: 195 VTHSMPPEKAEVFQSLRGWAGSSLLPLLRPV 287 V HSMPP+K E+F+S+ A +LLP L+ V Sbjct: 64 VLHSMPPQKIEIFKSMEDRAEQNLLPHLKDV 94
>DCP1B_HUMAN (Q8IZD4) mRNA decapping enzyme 1B (EC 3.-.-.-)| Length = 618 Score = 28.9 bits (63), Expect = 3.5 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = +3 Query: 36 PRRHNSPIDREL-PTMQAQSILRVPGHPAAALP 131 PRRH+ PI+++L P +Q + HP + LP Sbjct: 280 PRRHSPPIEKQLCPAIQKLMVRSADLHPLSELP 312
>DCP1B_PONPY (Q5R413) mRNA decapping enzyme 1B (EC 3.-.-.-)| Length = 609 Score = 28.9 bits (63), Expect = 3.5 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = +3 Query: 36 PRRHNSPIDREL-PTMQAQSILRVPGHPAAALP 131 PRRH+ PI+++L P +Q + HP + LP Sbjct: 276 PRRHSPPIEKQLCPAIQKLMVRSADLHPLSELP 308
>PRIM_BPP4 (P10277) Putative P4-specific DNA primase (EC 2.7.7.-)| Length = 777 Score = 28.5 bits (62), Expect = 4.6 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = -1 Query: 142 RRGRGSA---AAGWPGTRRMLCACMVGSSRSMGELWRRGGVVLP 20 R G G+A G+PG C + G+ R+ G WR G +V+P Sbjct: 125 RTGTGNAYLTRKGFPGRE---CRMLTGTHRAGGVSWRAGDLVVP 165
>Y2232_MYCBO (P64954) Hypothetical protein Mb2232| Length = 512 Score = 28.1 bits (61), Expect = 6.0 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = +3 Query: 6 RVGLVGNTTPPRRHNSPIDRELPTMQAQSILRVPGHPAAALPLPR 140 R G + + RR P++R P+ + + PG PAAALP PR Sbjct: 451 RRGQLRHVWDSRRPAPPLNR--PSCRRAARRPAPGKPAAALPQPR 493
>Y2209_MYCTU (P64953) Hypothetical protein Rv2209/MT2265| Length = 512 Score = 28.1 bits (61), Expect = 6.0 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = +3 Query: 6 RVGLVGNTTPPRRHNSPIDRELPTMQAQSILRVPGHPAAALPLPR 140 R G + + RR P++R P+ + + PG PAAALP PR Sbjct: 451 RRGQLRHVWDSRRPAPPLNR--PSCRRAARRPAPGKPAAALPQPR 493
>STH_PANTR (Q5YCU8) Saitohin| Length = 128 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/13 (84%), Positives = 11/13 (84%) Frame = +3 Query: 105 PGHPAAALPLPRR 143 P HPAAALPLP R Sbjct: 106 PSHPAAALPLPMR 118
>STH_HUMAN (Q8IWL8) Saitohin| Length = 128 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/13 (84%), Positives = 11/13 (84%) Frame = +3 Query: 105 PGHPAAALPLPRR 143 P HPAAALPLP R Sbjct: 106 PSHPAAALPLPMR 118
>STH_GORGO (Q5YCU7) Saitohin| Length = 128 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/13 (84%), Positives = 11/13 (84%) Frame = +3 Query: 105 PGHPAAALPLPRR 143 P HPAAALPLP R Sbjct: 106 PSHPAAALPLPMR 118
>EP400_MOUSE (Q8CHI8) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa| SWI2/SNF2-related protein) (Domino homolog) (mDomino) Length = 3072 Score = 27.7 bits (60), Expect = 7.8 Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 6/73 (8%) Frame = +3 Query: 18 VGNTTPPRRHNSPIDRELPTMQAQSIL-----RVPG-HPAAALPLPRRQCRRXXXXXXXX 179 V +T PP P R LPT + S L PG PA + P+ R Sbjct: 679 VASTRPPLDSAQPCQRSLPTSSSSSSLVPVSGSGPGPSPARSSPVNRPSSATNKALSPIT 738 Query: 180 XXQRGVTHSMPPE 218 GV S PP+ Sbjct: 739 SRSPGVAVSAPPK 751 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.129 0.472 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,762,155 Number of Sequences: 219361 Number of extensions: 457698 Number of successful extensions: 1627 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 1596 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1626 length of database: 80,573,946 effective HSP length: 71 effective length of database: 64,999,315 effective search space used: 1559983560 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
