ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast50f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK073222.1| Oryza sativa (japonica cultivar-group) cDNA clon... 343 2e-91
2gb|AC116949.11| Oryza sativa (japonica cultivar-group) chromosom... 170 2e-39
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 170 2e-39
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 170 2e-39
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 98 2e-17
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 98 2e-17
7emb|AL928755.5|CNS08CBS Oryza sativa chromosome 12, . BAC OSJNBb... 98 2e-17
8ref|XM_472396.1| Oryza sativa (japonica cultivar-group), predic... 82 1e-12
9emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4,... 82 1e-12
10dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
11dbj|AK121649.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
12dbj|AK107301.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
13emb|AL929350.3|CNS08CCE Oryza sativa chromosome 12, . BAC OSJNBb... 50 0.005
14emb|AL731762.2|CNS07YPW Oryza sativa chromosome 12, . BAC OJ1119... 46 0.081
15gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 5.0
16gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 5.0
17dbj|AK033002.1| Mus musculus 12 days embryo male wolffian duct i... 40 5.0
18gb|AC137589.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
19gb|AC144558.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
20gb|AC148986.5| Mus musculus BAC clone RP23-89A16 from chromosome... 40 5.0
21dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
22dbj|AP003921.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
23emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 5.0
24emb|AL845466.4| Mouse DNA sequence from clone RP23-433P19 on chr... 40 5.0
25gb|AC141883.4| Mus musculus BAC clone RP24-128P19 from 7, comple... 40 5.0
26gb|M59852.1|ATUCBG1 A.tumefaciens beta-D-glucosidase (cbg-1) gen... 40 5.0

>dbj|AK073222.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024D09, full
            insert sequence
          Length = 1769

 Score =  343 bits (173), Expect = 2e-91
 Identities = 251/277 (90%)
 Strand = Plus / Minus

                                                                        
Query: 99   cagccagacctcgtcgcggacggtggcgcattcgtcgtcgttgcggtgccacgtccaaac 158
            |||||||||||||||||||||||||||| | | |||||||||||||||||||||||| ||
Sbjct: 1425 cagccagacctcgtcgcggacggtggcgaactggtcgtcgttgcggtgccacgtccagac 1366

                                                                        
Query: 159  ggcgctcgtctcgttgacgattctcaaccgaccgtgcccgaagctcgcctcccggaacac 218
            ||||||||||||||| | ||  |||| ||| |||||||||||||||||||||| |||| |
Sbjct: 1365 ggcgctcgtctcgttcaggaccctcagccgcccgtgcccgaagctcgcctccctgaactc 1306

                                                                        
Query: 219  cgacatgtgcgctgacttgtgatccttgaggaactcgagagcaagcccttccctgttgcc 278
            ||||| |||||| ||||||||  |||||| ||||| ||||||||| ||||||||||||||
Sbjct: 1305 cgacaggtgcgccgacttgtgccccttgatgaacttgagagcaaggccttccctgttgcc 1246

                                                                        
Query: 279  gccgtcgccaatggtgatgaacatcgggccccggctgtcggcctcgttgtcgtagatcct 338
             |||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||
Sbjct: 1245 cccgtcgccaatggtgatgtacattgggccccggctgtcagcctcgttgtcgtagatcct 1186

                                                 
Query: 339  cgtgaatcgctcgtaggcgtggacgtgcccggagaag 375
            |||||| |||||||||||||||||||| |||| ||||
Sbjct: 1185 cgtgaagcgctcgtaggcgtggacgtggccggcgaag 1149



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>gb|AC116949.11| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0040B10 map R2918, complete sequence
          Length = 149132

 Score =  170 bits (86), Expect = 2e-39
 Identities = 137/154 (88%)
 Strand = Plus / Plus

                                                                         
Query: 99    cagccagacctcgtcgcggacggtggcgcattcgtcgtcgttgcggtgccacgtccaaac 158
             |||||||||||||||||||||||||||| | | |||||||||||||||||||||||| ||
Sbjct: 58887 cagccagacctcgtcgcggacggtggcgaactggtcgtcgttgcggtgccacgtccagac 58946

                                                                         
Query: 159   ggcgctcgtctcgttgacgattctcaaccgaccgtgcccgaagctcgcctcccggaacac 218
             ||||||||||||||| | ||  |||| ||| |||||||||||||||||||||| |||| |
Sbjct: 58947 ggcgctcgtctcgttcaggaccctcagccgcccgtgcccgaagctcgcctccctgaactc 59006

                                               
Query: 219   cgacatgtgcgctgacttgtgatccttgaggaac 252
             ||||| |||||| ||||||||  |||||| ||||
Sbjct: 59007 cgacaggtgcgccgacttgtgccccttgatgaac 59040



 Score =  133 bits (67), Expect = 4e-28
 Identities = 82/87 (94%)
 Strand = Plus / Plus

                                                                         
Query: 255   gagagcaagcccttccctgttgccgccgtcgccaatggtgatgaacatcgggccccggct 314
             ||||||||| |||||||||||||| |||||||||||||||||| |||| |||||||||||
Sbjct: 59396 gagagcaaggccttccctgttgcccccgtcgccaatggtgatgtacattgggccccggct 59455

                                        
Query: 315   gtcggcctcgttgtcgtagatcctcgt 341
             ||| |||||||||||||||||||||||
Sbjct: 59456 gtcagcctcgttgtcgtagatcctcgt 59482



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                              
Query: 190   ccgtgcccgaagctcgcctcccggaacaccgac 222
             ||||||||||||||||||||||||||| |||||
Sbjct: 71580 ccgtgcccgaagctcgcctcccggaacgccgac 71548



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 130   tcgtcgtcgttgcggtgccacgtcca 155
             ||||||||||| ||||||||||||||
Sbjct: 71640 tcgtcgtcgttccggtgccacgtcca 71615



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 346   cgctcgtaggcgtggacgtgcccggagaag 375
             |||||||||||||||||||| |||| ||||
Sbjct: 59564 cgctcgtaggcgtggacgtggccggcgaag 59593



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  170 bits (86), Expect = 2e-39
 Identities = 137/154 (88%)
 Strand = Plus / Plus

                                                                           
Query: 99      cagccagacctcgtcgcggacggtggcgcattcgtcgtcgttgcggtgccacgtccaaac 158
               |||||||||||||||||||||||||||| | | |||||||||||||||||||||||| ||
Sbjct: 2406790 cagccagacctcgtcgcggacggtggcgaactggtcgtcgttgcggtgccacgtccagac 2406849

                                                                           
Query: 159     ggcgctcgtctcgttgacgattctcaaccgaccgtgcccgaagctcgcctcccggaacac 218
               ||||||||||||||| | ||  |||| ||| |||||||||||||||||||||| |||| |
Sbjct: 2406850 ggcgctcgtctcgttcaggaccctcagccgcccgtgcccgaagctcgcctccctgaactc 2406909

                                                 
Query: 219     cgacatgtgcgctgacttgtgatccttgaggaac 252
               ||||| |||||| ||||||||  |||||| ||||
Sbjct: 2406910 cgacaggtgcgccgacttgtgccccttgatgaac 2406943



 Score =  133 bits (67), Expect = 4e-28
 Identities = 82/87 (94%)
 Strand = Plus / Plus

                                                                           
Query: 255     gagagcaagcccttccctgttgccgccgtcgccaatggtgatgaacatcgggccccggct 314
               ||||||||| |||||||||||||| |||||||||||||||||| |||| |||||||||||
Sbjct: 2407299 gagagcaaggccttccctgttgcccccgtcgccaatggtgatgtacattgggccccggct 2407358

                                          
Query: 315     gtcggcctcgttgtcgtagatcctcgt 341
               ||| |||||||||||||||||||||||
Sbjct: 2407359 gtcagcctcgttgtcgtagatcctcgt 2407385



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                                
Query: 190     ccgtgcccgaagctcgcctcccggaacaccgac 222
               ||||||||||||||||||||||||||| |||||
Sbjct: 2419483 ccgtgcccgaagctcgcctcccggaacgccgac 2419451



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 130     tcgtcgtcgttgcggtgccacgtcca 155
               ||||||||||| ||||||||||||||
Sbjct: 2419543 tcgtcgtcgttccggtgccacgtcca 2419518



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 346     cgctcgtaggcgtggacgtgcccggagaag 375
               |||||||||||||||||||| |||| ||||
Sbjct: 2407467 cgctcgtaggcgtggacgtggccggcgaag 2407496



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 60       ggcagttggcttggagagtt 79
                ||||||||||||||||||||
Sbjct: 21105209 ggcagttggcttggagagtt 21105190



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  170 bits (86), Expect = 2e-39
 Identities = 137/154 (88%)
 Strand = Plus / Plus

                                                                           
Query: 99      cagccagacctcgtcgcggacggtggcgcattcgtcgtcgttgcggtgccacgtccaaac 158
               |||||||||||||||||||||||||||| | | |||||||||||||||||||||||| ||
Sbjct: 2414526 cagccagacctcgtcgcggacggtggcgaactggtcgtcgttgcggtgccacgtccagac 2414585

                                                                           
Query: 159     ggcgctcgtctcgttgacgattctcaaccgaccgtgcccgaagctcgcctcccggaacac 218
               ||||||||||||||| | ||  |||| ||| |||||||||||||||||||||| |||| |
Sbjct: 2414586 ggcgctcgtctcgttcaggaccctcagccgcccgtgcccgaagctcgcctccctgaactc 2414645

                                                 
Query: 219     cgacatgtgcgctgacttgtgatccttgaggaac 252
               ||||| |||||| ||||||||  |||||| ||||
Sbjct: 2414646 cgacaggtgcgccgacttgtgccccttgatgaac 2414679



 Score =  133 bits (67), Expect = 4e-28
 Identities = 82/87 (94%)
 Strand = Plus / Plus

                                                                           
Query: 255     gagagcaagcccttccctgttgccgccgtcgccaatggtgatgaacatcgggccccggct 314
               ||||||||| |||||||||||||| |||||||||||||||||| |||| |||||||||||
Sbjct: 2415035 gagagcaaggccttccctgttgcccccgtcgccaatggtgatgtacattgggccccggct 2415094

                                          
Query: 315     gtcggcctcgttgtcgtagatcctcgt 341
               ||| |||||||||||||||||||||||
Sbjct: 2415095 gtcagcctcgttgtcgtagatcctcgt 2415121



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                                
Query: 190     ccgtgcccgaagctcgcctcccggaacaccgac 222
               ||||||||||||||||||||||||||| |||||
Sbjct: 2427219 ccgtgcccgaagctcgcctcccggaacgccgac 2427187



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 130     tcgtcgtcgttgcggtgccacgtcca 155
               ||||||||||| ||||||||||||||
Sbjct: 2427279 tcgtcgtcgttccggtgccacgtcca 2427254



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 346     cgctcgtaggcgtggacgtgcccggagaag 375
               |||||||||||||||||||| |||| ||||
Sbjct: 2415203 cgctcgtaggcgtggacgtggccggcgaag 2415232



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 60       ggcagttggcttggagagtt 79
                ||||||||||||||||||||
Sbjct: 21415450 ggcagttggcttggagagtt 21415431



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 64/69 (92%)
 Strand = Plus / Plus

                                                                           
Query: 273     gttgccgccgtcgccaatggtgatgaacatcgggccccggctgtcggcctcgttgtcgta 332
               |||||| |||||||||||||||||| ||||||||||| |||||| ||| |||||||||||
Sbjct: 2521039 gttgcctccgtcgccaatggtgatgtacatcgggccctggctgttggcttcgttgtcgta 2521098

                        
Query: 333     gatcctcgt 341
               |||||||||
Sbjct: 2521099 gatcctcgt 2521107



 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                           
Query: 132     gtcgtcgttgcggtgccacgtccaaacggcgctcgtctcgttgacgattctcaaccgacc 191
               |||||||||||||||||| ||||| | |||  |||||||| | ||||| ||||  || ||
Sbjct: 2520806 gtcgtcgttgcggtgccatgtccagatggccttcgtctcgctcacgatcctcagacgccc 2520865

                                               
Query: 192     gtgcccgaagctcgcctcccggaacaccgaca 223
                ||||||||||||  ||||| |||| ||||||
Sbjct: 2520866 atgcccgaagctcatctccctgaactccgaca 2520897



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                 
Query: 342     gaatcgctcgtaggcgtggacgtgcccggagaag 375
               ||||||||||||||||||||||||  ||||||||
Sbjct: 2521409 gaatcgctcgtaggcgtggacgtgggcggagaag 2521442



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                
Query: 190     ccgtgcccgaagctcgcctcccggaacaccgac 222
               |||||||||||||||||||||| |||| |||||
Sbjct: 2537629 ccgtgcccgaagctcgcctccctgaacgccgac 2537597



 Score = 46.1 bits (23), Expect = 0.081
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 191      cgtgcccgaagctcgcctcccggaacaccga 221
                |||| |||||||| |||||||||||||||||
Sbjct: 27337563 cgtggccgaagctggcctcccggaacaccga 27337593



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 64/69 (92%)
 Strand = Plus / Plus

                                                                           
Query: 273     gttgccgccgtcgccaatggtgatgaacatcgggccccggctgtcggcctcgttgtcgta 332
               |||||| |||||||||||||||||| ||||||||||| |||||| ||| |||||||||||
Sbjct: 2520983 gttgcctccgtcgccaatggtgatgtacatcgggccctggctgttggcttcgttgtcgta 2521042

                        
Query: 333     gatcctcgt 341
               |||||||||
Sbjct: 2521043 gatcctcgt 2521051



 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                           
Query: 132     gtcgtcgttgcggtgccacgtccaaacggcgctcgtctcgttgacgattctcaaccgacc 191
               |||||||||||||||||| ||||| | |||  |||||||| | ||||| ||||  || ||
Sbjct: 2520750 gtcgtcgttgcggtgccatgtccagatggccttcgtctcgctcacgatcctcagacgccc 2520809

                                               
Query: 192     gtgcccgaagctcgcctcccggaacaccgaca 223
                ||||||||||||  ||||| |||| ||||||
Sbjct: 2520810 atgcccgaagctcatctccctgaactccgaca 2520841



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                 
Query: 342     gaatcgctcgtaggcgtggacgtgcccggagaag 375
               ||||||||||||||||||||||||  ||||||||
Sbjct: 2521353 gaatcgctcgtaggcgtggacgtgggcggagaag 2521386



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                
Query: 190     ccgtgcccgaagctcgcctcccggaacaccgac 222
               |||||||||||||||||||||| |||| |||||
Sbjct: 2537573 ccgtgcccgaagctcgcctccctgaacgccgac 2537541



 Score = 46.1 bits (23), Expect = 0.081
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 191      cgtgcccgaagctcgcctcccggaacaccga 221
                |||| |||||||| |||||||||||||||||
Sbjct: 27263163 cgtggccgaagctggcctcccggaacaccga 27263193



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>emb|AL928755.5|CNS08CBS Oryza sativa chromosome 12, . BAC OSJNBb0050K10 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 122901

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 64/69 (92%)
 Strand = Plus / Minus

                                                                         
Query: 273   gttgccgccgtcgccaatggtgatgaacatcgggccccggctgtcggcctcgttgtcgta 332
             |||||| |||||||||||||||||| ||||||||||| |||||| ||| |||||||||||
Sbjct: 22453 gttgcctccgtcgccaatggtgatgtacatcgggccctggctgttggcttcgttgtcgta 22394

                      
Query: 333   gatcctcgt 341
             |||||||||
Sbjct: 22393 gatcctcgt 22385



 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                         
Query: 132   gtcgtcgttgcggtgccacgtccaaacggcgctcgtctcgttgacgattctcaaccgacc 191
             |||||||||||||||||| ||||| | |||  |||||||| | ||||| ||||  || ||
Sbjct: 22686 gtcgtcgttgcggtgccatgtccagatggccttcgtctcgctcacgatcctcagacgccc 22627

                                             
Query: 192   gtgcccgaagctcgcctcccggaacaccgaca 223
              ||||||||||||  ||||| |||| ||||||
Sbjct: 22626 atgcccgaagctcatctccctgaactccgaca 22595



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 342   gaatcgctcgtaggcgtggacgtgcccggagaag 375
             ||||||||||||||||||||||||  ||||||||
Sbjct: 22083 gaatcgctcgtaggcgtggacgtgggcggagaag 22050



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 190  ccgtgcccgaagctcgcctcccggaacaccgac 222
            |||||||||||||||||||||| |||| |||||
Sbjct: 5863 ccgtgcccgaagctcgcctccctgaacgccgac 5895



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>ref|XM_472396.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1359

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 104/125 (83%)
 Strand = Plus / Minus

                                                                        
Query: 87   agccaggctctccagccagacctcgtcgcggacggtggcgcattcgtcgtcgttgcggtg 146
            |||||||||||||||||||| ||||||||| ||||||| |    ||||||||||||||||
Sbjct: 1290 agccaggctctccagccagatctcgtcgcgcacggtggagtcggcgtcgtcgttgcggtg 1231

                                                                        
Query: 147  ccacgtccaaacggcgctcgtctcgttgacgattctcaaccgaccgtgcccgaagctcgc 206
            |||||||||    |||   ||| |||| || |  |||| ||| |||||||||||||||||
Sbjct: 1230 ccacgtccagcgcgcggcggtcgcgttcaccacgctcagccgcccgtgcccgaagctcgc 1171

                 
Query: 207  ctccc 211
            |||||
Sbjct: 1170 ctccc 1166



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 265  ccttccctgttgccgccgtcgccaatggtgatg 297
            ||||||||||||||||||||||| |||||||||
Sbjct: 1112 ccttccctgttgccgccgtcgcctatggtgatg 1080



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>emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L04,
             complete sequence
          Length = 143301

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 104/125 (83%)
 Strand = Plus / Plus

                                                                         
Query: 87    agccaggctctccagccagacctcgtcgcggacggtggcgcattcgtcgtcgttgcggtg 146
             |||||||||||||||||||| ||||||||| ||||||| |    ||||||||||||||||
Sbjct: 23436 agccaggctctccagccagatctcgtcgcgcacggtggagtcggcgtcgtcgttgcggtg 23495

                                                                         
Query: 147   ccacgtccaaacggcgctcgtctcgttgacgattctcaaccgaccgtgcccgaagctcgc 206
             |||||||||    |||   ||| |||| || |  |||| ||| |||||||||||||||||
Sbjct: 23496 ccacgtccagcgcgcggcggtcgcgttcaccacgctcagccgcccgtgcccgaagctcgc 23555

                  
Query: 207   ctccc 211
             |||||
Sbjct: 23556 ctccc 23560



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                              
Query: 265   ccttccctgttgccgccgtcgccaatggtgatg 297
             ||||||||||||||||||||||| |||||||||
Sbjct: 23701 ccttccctgttgccgccgtcgcctatggtgatg 23733



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 104/125 (83%)
 Strand = Plus / Plus

                                                                            
Query: 87       agccaggctctccagccagacctcgtcgcggacggtggcgcattcgtcgtcgttgcggtg 146
                |||||||||||||||||||| ||||||||| ||||||| |    ||||||||||||||||
Sbjct: 20292803 agccaggctctccagccagatctcgtcgcgcacggtggagtcggcgtcgtcgttgcggtg 20292862

                                                                            
Query: 147      ccacgtccaaacggcgctcgtctcgttgacgattctcaaccgaccgtgcccgaagctcgc 206
                |||||||||    |||   ||| |||| || |  |||| ||| |||||||||||||||||
Sbjct: 20292863 ccacgtccagcgcgcggcggtcgcgttcaccacgctcagccgcccgtgcccgaagctcgc 20292922

                     
Query: 207      ctccc 211
                |||||
Sbjct: 20292923 ctccc 20292927



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                                 
Query: 265      ccttccctgttgccgccgtcgccaatggtgatg 297
                ||||||||||||||||||||||| |||||||||
Sbjct: 20293068 ccttccctgttgccgccgtcgcctatggtgatg 20293100



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>dbj|AK121649.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033060H09, full
            insert sequence
          Length = 1643

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 104/125 (83%)
 Strand = Plus / Minus

                                                                        
Query: 87   agccaggctctccagccagacctcgtcgcggacggtggcgcattcgtcgtcgttgcggtg 146
            |||||||||||||||||||| ||||||||| ||||||| |    ||||||||||||||||
Sbjct: 1347 agccaggctctccagccagatctcgtcgcgcacggtggagtcggcgtcgtcgttgcggtg 1288

                                                                        
Query: 147  ccacgtccaaacggcgctcgtctcgttgacgattctcaaccgaccgtgcccgaagctcgc 206
            |||||||||    |||   ||| |||| || |  |||| ||| |||||||||||||||||
Sbjct: 1287 ccacgtccagcgcgcggcggtcgcgttcaccacgctcagccgcccgtgcccgaagctcgc 1228

                 
Query: 207  ctccc 211
            |||||
Sbjct: 1227 ctccc 1223



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 265  ccttccctgttgccgccgtcgccaatggtgatg 297
            ||||||||||||||||||||||| |||||||||
Sbjct: 1169 ccttccctgttgccgccgtcgcctatggtgatg 1137



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>dbj|AK107301.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-C09, full
            insert sequence
          Length = 1507

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 190  ccgtgcccgaagctcgcctcccggaacaccgac 222
            |||||||||||||||||||||| |||| |||||
Sbjct: 1256 ccgtgcccgaagctcgcctccctgaacgccgac 1224



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>emb|AL929350.3|CNS08CCE Oryza sativa chromosome 12, . BAC OSJNBb0104J15 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 136490

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                               
Query: 190    ccgtgcccgaagctcgcctcccggaacaccgac 222
              |||||||||||||||||||||| |||| |||||
Sbjct: 130380 ccgtgcccgaagctcgcctccctgaacgccgac 130412



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>emb|AL731762.2|CNS07YPW Oryza sativa chromosome 12, . BAC OJ1119_E02 of library Monsanto from
            chromosome 12 of cultivar Nipponbare of ssp. japonica of
            Oryza sativa (rice), complete sequence
          Length = 124605

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 191  cgtgcccgaagctcgcctcccggaacaccga 221
            |||| |||||||| |||||||||||||||||
Sbjct: 5883 cgtggccgaagctggcctcccggaacaccga 5913



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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 108     ctcgtcgcggacggtggcgc 127
               ||||||||||||||||||||
Sbjct: 1040656 ctcgtcgcggacggtggcgc 1040637



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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 272     tgttgccgccgtcgccaatggtgatgaa 299
               |||||||||||||||| | |||||||||
Sbjct: 2739524 tgttgccgccgtcgccgaaggtgatgaa 2739551



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>dbj|AK033002.1| Mus musculus 12 days embryo male wolffian duct includes surrounding
           region cDNA, RIKEN full-length enriched library,
           clone:6720489P18 product:unclassifiable, full insert
           sequence
          Length = 2413

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 265 ccttccctgttgccgccgtc 284
           ||||||||||||||||||||
Sbjct: 344 ccttccctgttgccgccgtc 363



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>gb|AC137589.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0072L08, complete sequence
          Length = 152272

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     ggcagttggcttggagagtt 79
              ||||||||||||||||||||
Sbjct: 107524 ggcagttggcttggagagtt 107505



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>gb|AC144558.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0072L08, sequencing in progress, complete sequence
          Length = 152272

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     ggcagttggcttggagagtt 79
              ||||||||||||||||||||
Sbjct: 107524 ggcagttggcttggagagtt 107505



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>gb|AC148986.5| Mus musculus BAC clone RP23-89A16 from chromosome 7, complete sequence
          Length = 243039

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 265   ccttccctgttgccgccgtc 284
             ||||||||||||||||||||
Sbjct: 63370 ccttccctgttgccgccgtc 63389



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 158      cggcgctcgtctcgttgacg 177
                ||||||||||||||||||||
Sbjct: 12018248 cggcgctcgtctcgttgacg 12018229



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>dbj|AP003921.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0028G04
          Length = 159761

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   cggcgctcgtctcgttgacg 177
             ||||||||||||||||||||
Sbjct: 63912 cggcgctcgtctcgttgacg 63893



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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 306    gccccggctgtcggcctcgt 325
              ||||||||||||||||||||
Sbjct: 298264 gccccggctgtcggcctcgt 298283



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>emb|AL845466.4| Mouse DNA sequence from clone RP23-433P19 on chromosome 2, complete
             sequence
          Length = 197839

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 83    gactagccaggctctccagccaga 106
             ||||||| ||||||||||||||||
Sbjct: 29754 gactagctaggctctccagccaga 29777



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>gb|AC141883.4| Mus musculus BAC clone RP24-128P19 from 7, complete sequence
          Length = 189828

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 265    ccttccctgttgccgccgtc 284
              ||||||||||||||||||||
Sbjct: 115894 ccttccctgttgccgccgtc 115913



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>gb|M59852.1|ATUCBG1 A.tumefaciens beta-D-glucosidase (cbg-1) gene, complete cds
          Length = 3710

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 276  gccgccgtcgccaatggtga 295
            ||||||||||||||||||||
Sbjct: 3643 gccgccgtcgccaatggtga 3662


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,891,477
Number of Sequences: 3902068
Number of extensions: 1891477
Number of successful extensions: 33445
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33117
Number of HSP's gapped (non-prelim): 324
length of query: 375
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 353
effective length of database: 17,147,199,772
effective search space: 6052961519516
effective search space used: 6052961519516
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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