>gb|AC116949.11| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0040B10 map R2918, complete sequence
Length = 149132
Score = 170 bits (86), Expect = 2e-39
Identities = 137/154 (88%)
Strand = Plus / Plus
Query: 99 cagccagacctcgtcgcggacggtggcgcattcgtcgtcgttgcggtgccacgtccaaac 158
|||||||||||||||||||||||||||| | | |||||||||||||||||||||||| ||
Sbjct: 58887 cagccagacctcgtcgcggacggtggcgaactggtcgtcgttgcggtgccacgtccagac 58946
Query: 159 ggcgctcgtctcgttgacgattctcaaccgaccgtgcccgaagctcgcctcccggaacac 218
||||||||||||||| | || |||| ||| |||||||||||||||||||||| |||| |
Sbjct: 58947 ggcgctcgtctcgttcaggaccctcagccgcccgtgcccgaagctcgcctccctgaactc 59006
Query: 219 cgacatgtgcgctgacttgtgatccttgaggaac 252
||||| |||||| |||||||| |||||| ||||
Sbjct: 59007 cgacaggtgcgccgacttgtgccccttgatgaac 59040
Score = 133 bits (67), Expect = 4e-28
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 255 gagagcaagcccttccctgttgccgccgtcgccaatggtgatgaacatcgggccccggct 314
||||||||| |||||||||||||| |||||||||||||||||| |||| |||||||||||
Sbjct: 59396 gagagcaaggccttccctgttgcccccgtcgccaatggtgatgtacattgggccccggct 59455
Query: 315 gtcggcctcgttgtcgtagatcctcgt 341
||| |||||||||||||||||||||||
Sbjct: 59456 gtcagcctcgttgtcgtagatcctcgt 59482
Score = 58.0 bits (29), Expect = 2e-05
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 190 ccgtgcccgaagctcgcctcccggaacaccgac 222
||||||||||||||||||||||||||| |||||
Sbjct: 71580 ccgtgcccgaagctcgcctcccggaacgccgac 71548
Score = 44.1 bits (22), Expect = 0.32
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 130 tcgtcgtcgttgcggtgccacgtcca 155
||||||||||| ||||||||||||||
Sbjct: 71640 tcgtcgtcgttccggtgccacgtcca 71615
Score = 44.1 bits (22), Expect = 0.32
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 346 cgctcgtaggcgtggacgtgcccggagaag 375
|||||||||||||||||||| |||| ||||
Sbjct: 59564 cgctcgtaggcgtggacgtggccggcgaag 59593
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 170 bits (86), Expect = 2e-39
Identities = 137/154 (88%)
Strand = Plus / Plus
Query: 99 cagccagacctcgtcgcggacggtggcgcattcgtcgtcgttgcggtgccacgtccaaac 158
|||||||||||||||||||||||||||| | | |||||||||||||||||||||||| ||
Sbjct: 2406790 cagccagacctcgtcgcggacggtggcgaactggtcgtcgttgcggtgccacgtccagac 2406849
Query: 159 ggcgctcgtctcgttgacgattctcaaccgaccgtgcccgaagctcgcctcccggaacac 218
||||||||||||||| | || |||| ||| |||||||||||||||||||||| |||| |
Sbjct: 2406850 ggcgctcgtctcgttcaggaccctcagccgcccgtgcccgaagctcgcctccctgaactc 2406909
Query: 219 cgacatgtgcgctgacttgtgatccttgaggaac 252
||||| |||||| |||||||| |||||| ||||
Sbjct: 2406910 cgacaggtgcgccgacttgtgccccttgatgaac 2406943
Score = 133 bits (67), Expect = 4e-28
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 255 gagagcaagcccttccctgttgccgccgtcgccaatggtgatgaacatcgggccccggct 314
||||||||| |||||||||||||| |||||||||||||||||| |||| |||||||||||
Sbjct: 2407299 gagagcaaggccttccctgttgcccccgtcgccaatggtgatgtacattgggccccggct 2407358
Query: 315 gtcggcctcgttgtcgtagatcctcgt 341
||| |||||||||||||||||||||||
Sbjct: 2407359 gtcagcctcgttgtcgtagatcctcgt 2407385
Score = 58.0 bits (29), Expect = 2e-05
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 190 ccgtgcccgaagctcgcctcccggaacaccgac 222
||||||||||||||||||||||||||| |||||
Sbjct: 2419483 ccgtgcccgaagctcgcctcccggaacgccgac 2419451
Score = 44.1 bits (22), Expect = 0.32
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 130 tcgtcgtcgttgcggtgccacgtcca 155
||||||||||| ||||||||||||||
Sbjct: 2419543 tcgtcgtcgttccggtgccacgtcca 2419518
Score = 44.1 bits (22), Expect = 0.32
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 346 cgctcgtaggcgtggacgtgcccggagaag 375
|||||||||||||||||||| |||| ||||
Sbjct: 2407467 cgctcgtaggcgtggacgtggccggcgaag 2407496
Score = 40.1 bits (20), Expect = 5.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 60 ggcagttggcttggagagtt 79
||||||||||||||||||||
Sbjct: 21105209 ggcagttggcttggagagtt 21105190
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 170 bits (86), Expect = 2e-39
Identities = 137/154 (88%)
Strand = Plus / Plus
Query: 99 cagccagacctcgtcgcggacggtggcgcattcgtcgtcgttgcggtgccacgtccaaac 158
|||||||||||||||||||||||||||| | | |||||||||||||||||||||||| ||
Sbjct: 2414526 cagccagacctcgtcgcggacggtggcgaactggtcgtcgttgcggtgccacgtccagac 2414585
Query: 159 ggcgctcgtctcgttgacgattctcaaccgaccgtgcccgaagctcgcctcccggaacac 218
||||||||||||||| | || |||| ||| |||||||||||||||||||||| |||| |
Sbjct: 2414586 ggcgctcgtctcgttcaggaccctcagccgcccgtgcccgaagctcgcctccctgaactc 2414645
Query: 219 cgacatgtgcgctgacttgtgatccttgaggaac 252
||||| |||||| |||||||| |||||| ||||
Sbjct: 2414646 cgacaggtgcgccgacttgtgccccttgatgaac 2414679
Score = 133 bits (67), Expect = 4e-28
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 255 gagagcaagcccttccctgttgccgccgtcgccaatggtgatgaacatcgggccccggct 314
||||||||| |||||||||||||| |||||||||||||||||| |||| |||||||||||
Sbjct: 2415035 gagagcaaggccttccctgttgcccccgtcgccaatggtgatgtacattgggccccggct 2415094
Query: 315 gtcggcctcgttgtcgtagatcctcgt 341
||| |||||||||||||||||||||||
Sbjct: 2415095 gtcagcctcgttgtcgtagatcctcgt 2415121
Score = 58.0 bits (29), Expect = 2e-05
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 190 ccgtgcccgaagctcgcctcccggaacaccgac 222
||||||||||||||||||||||||||| |||||
Sbjct: 2427219 ccgtgcccgaagctcgcctcccggaacgccgac 2427187
Score = 44.1 bits (22), Expect = 0.32
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 130 tcgtcgtcgttgcggtgccacgtcca 155
||||||||||| ||||||||||||||
Sbjct: 2427279 tcgtcgtcgttccggtgccacgtcca 2427254
Score = 44.1 bits (22), Expect = 0.32
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 346 cgctcgtaggcgtggacgtgcccggagaag 375
|||||||||||||||||||| |||| ||||
Sbjct: 2415203 cgctcgtaggcgtggacgtggccggcgaag 2415232
Score = 40.1 bits (20), Expect = 5.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 60 ggcagttggcttggagagtt 79
||||||||||||||||||||
Sbjct: 21415450 ggcagttggcttggagagtt 21415431
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 97.6 bits (49), Expect = 2e-17
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 273 gttgccgccgtcgccaatggtgatgaacatcgggccccggctgtcggcctcgttgtcgta 332
|||||| |||||||||||||||||| ||||||||||| |||||| ||| |||||||||||
Sbjct: 2521039 gttgcctccgtcgccaatggtgatgtacatcgggccctggctgttggcttcgttgtcgta 2521098
Query: 333 gatcctcgt 341
|||||||||
Sbjct: 2521099 gatcctcgt 2521107
Score = 56.0 bits (28), Expect = 8e-05
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 132 gtcgtcgttgcggtgccacgtccaaacggcgctcgtctcgttgacgattctcaaccgacc 191
|||||||||||||||||| ||||| | ||| |||||||| | ||||| |||| || ||
Sbjct: 2520806 gtcgtcgttgcggtgccatgtccagatggccttcgtctcgctcacgatcctcagacgccc 2520865
Query: 192 gtgcccgaagctcgcctcccggaacaccgaca 223
|||||||||||| ||||| |||| ||||||
Sbjct: 2520866 atgcccgaagctcatctccctgaactccgaca 2520897
Score = 52.0 bits (26), Expect = 0.001
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 342 gaatcgctcgtaggcgtggacgtgcccggagaag 375
|||||||||||||||||||||||| ||||||||
Sbjct: 2521409 gaatcgctcgtaggcgtggacgtgggcggagaag 2521442
Score = 50.1 bits (25), Expect = 0.005
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 190 ccgtgcccgaagctcgcctcccggaacaccgac 222
|||||||||||||||||||||| |||| |||||
Sbjct: 2537629 ccgtgcccgaagctcgcctccctgaacgccgac 2537597
Score = 46.1 bits (23), Expect = 0.081
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 191 cgtgcccgaagctcgcctcccggaacaccga 221
|||| |||||||| |||||||||||||||||
Sbjct: 27337563 cgtggccgaagctggcctcccggaacaccga 27337593
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 97.6 bits (49), Expect = 2e-17
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 273 gttgccgccgtcgccaatggtgatgaacatcgggccccggctgtcggcctcgttgtcgta 332
|||||| |||||||||||||||||| ||||||||||| |||||| ||| |||||||||||
Sbjct: 2520983 gttgcctccgtcgccaatggtgatgtacatcgggccctggctgttggcttcgttgtcgta 2521042
Query: 333 gatcctcgt 341
|||||||||
Sbjct: 2521043 gatcctcgt 2521051
Score = 56.0 bits (28), Expect = 8e-05
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 132 gtcgtcgttgcggtgccacgtccaaacggcgctcgtctcgttgacgattctcaaccgacc 191
|||||||||||||||||| ||||| | ||| |||||||| | ||||| |||| || ||
Sbjct: 2520750 gtcgtcgttgcggtgccatgtccagatggccttcgtctcgctcacgatcctcagacgccc 2520809
Query: 192 gtgcccgaagctcgcctcccggaacaccgaca 223
|||||||||||| ||||| |||| ||||||
Sbjct: 2520810 atgcccgaagctcatctccctgaactccgaca 2520841
Score = 52.0 bits (26), Expect = 0.001
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 342 gaatcgctcgtaggcgtggacgtgcccggagaag 375
|||||||||||||||||||||||| ||||||||
Sbjct: 2521353 gaatcgctcgtaggcgtggacgtgggcggagaag 2521386
Score = 50.1 bits (25), Expect = 0.005
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 190 ccgtgcccgaagctcgcctcccggaacaccgac 222
|||||||||||||||||||||| |||| |||||
Sbjct: 2537573 ccgtgcccgaagctcgcctccctgaacgccgac 2537541
Score = 46.1 bits (23), Expect = 0.081
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 191 cgtgcccgaagctcgcctcccggaacaccga 221
|||| |||||||| |||||||||||||||||
Sbjct: 27263163 cgtggccgaagctggcctcccggaacaccga 27263193
>emb|AL928755.5|CNS08CBS Oryza sativa chromosome 12, . BAC OSJNBb0050K10 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 122901
Score = 97.6 bits (49), Expect = 2e-17
Identities = 64/69 (92%)
Strand = Plus / Minus
Query: 273 gttgccgccgtcgccaatggtgatgaacatcgggccccggctgtcggcctcgttgtcgta 332
|||||| |||||||||||||||||| ||||||||||| |||||| ||| |||||||||||
Sbjct: 22453 gttgcctccgtcgccaatggtgatgtacatcgggccctggctgttggcttcgttgtcgta 22394
Query: 333 gatcctcgt 341
|||||||||
Sbjct: 22393 gatcctcgt 22385
Score = 56.0 bits (28), Expect = 8e-05
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 132 gtcgtcgttgcggtgccacgtccaaacggcgctcgtctcgttgacgattctcaaccgacc 191
|||||||||||||||||| ||||| | ||| |||||||| | ||||| |||| || ||
Sbjct: 22686 gtcgtcgttgcggtgccatgtccagatggccttcgtctcgctcacgatcctcagacgccc 22627
Query: 192 gtgcccgaagctcgcctcccggaacaccgaca 223
|||||||||||| ||||| |||| ||||||
Sbjct: 22626 atgcccgaagctcatctccctgaactccgaca 22595
Score = 52.0 bits (26), Expect = 0.001
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 342 gaatcgctcgtaggcgtggacgtgcccggagaag 375
|||||||||||||||||||||||| ||||||||
Sbjct: 22083 gaatcgctcgtaggcgtggacgtgggcggagaag 22050
Score = 50.1 bits (25), Expect = 0.005
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 190 ccgtgcccgaagctcgcctcccggaacaccgac 222
|||||||||||||||||||||| |||| |||||
Sbjct: 5863 ccgtgcccgaagctcgcctccctgaacgccgac 5895
>gb|M59852.1|ATUCBG1 A.tumefaciens beta-D-glucosidase (cbg-1) gene, complete cds
Length = 3710
Score = 40.1 bits (20), Expect = 5.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 276 gccgccgtcgccaatggtga 295
||||||||||||||||||||
Sbjct: 3643 gccgccgtcgccaatggtga 3662
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,891,477
Number of Sequences: 3902068
Number of extensions: 1891477
Number of successful extensions: 33445
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33117
Number of HSP's gapped (non-prelim): 324
length of query: 375
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 353
effective length of database: 17,147,199,772
effective search space: 6052961519516
effective search space used: 6052961519516
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)