ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast48g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 180 7e-43
2gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 56 3e-05
3dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 46 0.025
4emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 0.39
5emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 0.39
6ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 1.6
7ref|NM_119712.4| Arabidopsis thaliana protein binding AT4G35470 ... 38 6.2
8ref|XM_473438.1| Oryza sativa (japonica cultivar-group), predic... 38 6.2
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 6.2
10gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosom... 38 6.2
11emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4,... 38 6.2
12emb|AL161587.2|ATCHRIV83 Arabidopsis thaliana DNA chromosome 4, ... 38 6.2
13emb|AL117188.1|ATF15J1 Arabidopsis thaliana DNA chromosome 4, BA... 38 6.2
14emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in ... 38 6.2
15emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, ... 38 6.2
16gb|AY128730.1| Arabidopsis thaliana putative protein (At4g35470)... 38 6.2
17gb|AY072324.1| Arabidopsis thaliana putative protein (At4g35470;... 38 6.2
18gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome... 38 6.2
19dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
20dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
21dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
22gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, comp... 38 6.2
23dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
24dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
25gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome... 38 6.2
26emb|BX828819.1|CNS0A2KS Arabidopsis thaliana Full-length cDNA Co... 38 6.2
27gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, compl... 38 6.2
28gb|AY088703.1| Arabidopsis thaliana clone 92281 mRNA, complete s... 38 6.2
29gb|AF172996.1|AF172996 Trypanosoma congolense glucose transporte... 38 6.2
30dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
31dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
32dbj|AP003808.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
33dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 6.2
34emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in... 38 6.2
35gb|AF162335.1|AF162335 Mytilus galloprovincialis antimicrobial p... 38 6.2
36gb|AF162334.1|AF162334 Mytilus galloprovincialis antimicrobial p... 38 6.2
37gb|AF032097.1|AF032097 Trypanosoma congolense glucose transporte... 38 6.2
38gb|AF032096.1|AF032096 Trypanosoma congolense glucose transporte... 38 6.2

>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  180 bits (91), Expect = 7e-43
 Identities = 100/103 (97%)
 Strand = Plus / Minus

                                                                        
Query: 29   ttcattattgggcaaaacaagggattttttctgcacacgacaatgcattgaccggtagcc 88
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                                       
Query: 89   agctgagctgagcttccgcatgccgatcaaacccgtcgggcac 131
            ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcac 2794



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>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence
          Length = 1129

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 22   catcgacttcattattgggcaaaacaagggattttttctgcacacgac 69
            ||||||||| |||||||||||||  |||||| |||||||| |||||||
Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgac 1052



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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 46.1 bits (23), Expect = 0.025
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 52      attttttctgcacacgacaatgcattg 78
               |||||||| ||||||||||||||||||
Sbjct: 2128108 attttttccgcacacgacaatgcattg 2128082



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>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 43    aaacaagggattttttctgca 63
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585



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>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 40    gcaaaacaagggattttttct 60
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614



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>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin
            (LOC579890), mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 6    ggagggaacatcacaccatc 25
            ||||||||||||||||||||
Sbjct: 1457 ggagggaacatcacaccatc 1438



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>ref|NM_119712.4| Arabidopsis thaliana protein binding AT4G35470 mRNA, complete cds
          Length = 2474

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 57   ttctgcacacgacaatgcattga 79
            |||| ||||||||||||||||||
Sbjct: 1965 ttcttcacacgacaatgcattga 1987



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>ref|XM_473438.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2700

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 63  acacgacaatgcattgacc 81
           |||||||||||||||||||
Sbjct: 896 acacgacaatgcattgacc 878



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 37      tgggcaaaacaagggattt 55
               |||||||||||||||||||
Sbjct: 3842397 tgggcaaaacaagggattt 3842415



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>gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosome 5, complete sequence
          Length = 187121

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 87    ccagctgagctgagcttcc 105
             |||||||||||||||||||
Sbjct: 93147 ccagctgagctgagcttcc 93129



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>emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02,
             complete sequence
          Length = 173522

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 63    acacgacaatgcattgacc 81
             |||||||||||||||||||
Sbjct: 85603 acacgacaatgcattgacc 85585



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>emb|AL161587.2|ATCHRIV83 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83
          Length = 197859

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 57     ttctgcacacgacaatgcattga 79
              |||| ||||||||||||||||||
Sbjct: 113254 ttcttcacacgacaatgcattga 113276



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>emb|AL117188.1|ATF15J1 Arabidopsis thaliana DNA chromosome 4, BAC clone F15J1, partial
             sequence (ESSA project)
          Length = 27408

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 57    ttctgcacacgacaatgcattga 79
             |||| ||||||||||||||||||
Sbjct: 14903 ttcttcacacgacaatgcattga 14925



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>emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in linkage group 4, complete
              sequence
          Length = 157981

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 40     gcaaaacaagggatttttt 58
              |||||||||||||||||||
Sbjct: 129429 gcaaaacaagggatttttt 129411



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>emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, complete sequence
          Length = 140774

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 40    gcaaaacaagggatttttt 58
             |||||||||||||||||||
Sbjct: 89166 gcaaaacaagggatttttt 89184



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>gb|AY128730.1| Arabidopsis thaliana putative protein (At4g35470) mRNA, complete cds
          Length = 1891

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 57   ttctgcacacgacaatgcattga 79
            |||| ||||||||||||||||||
Sbjct: 1735 ttcttcacacgacaatgcattga 1757



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>gb|AY072324.1| Arabidopsis thaliana putative protein (At4g35470; F15J1.40) mRNA,
            complete cds
          Length = 2363

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 57   ttctgcacacgacaatgcattga 79
            |||| ||||||||||||||||||
Sbjct: 1965 ttcttcacacgacaatgcattga 1987



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>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11,
              complete sequence
          Length = 132151

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 37     tgggcaaaacaagggattt 55
              |||||||||||||||||||
Sbjct: 121021 tgggcaaaacaagggattt 121039



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 63       acacgacaatgcattgacc 81
                |||||||||||||||||||
Sbjct: 27654974 acacgacaatgcattgacc 27654956



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 14       catcacaccatcgacttcattat 36
                |||||||||||||| ||||||||
Sbjct: 22022485 catcacaccatcgaattcattat 22022463



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 63       acacgacaatgcattgacc 81
                |||||||||||||||||||
Sbjct: 16782177 acacgacaatgcattgacc 16782159



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>gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, complete sequence
          Length = 185162

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 89    agctgagctgagcttccgc 107
             |||||||||||||||||||
Sbjct: 29471 agctgagctgagcttccgc 29453



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 37      tgggcaaaacaagggattt 55
               |||||||||||||||||||
Sbjct: 3842508 tgggcaaaacaagggattt 3842526



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 63       acacgacaatgcattgacc 81
                |||||||||||||||||||
Sbjct: 24489738 acacgacaatgcattgacc 24489720



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>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0015N19, complete sequence
          Length = 168430

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 37    tgggcaaaacaagggattt 55
             |||||||||||||||||||
Sbjct: 48870 tgggcaaaacaagggattt 48888



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>emb|BX828819.1|CNS0A2KS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTSIL41ZG08 of Silique of strain col-0 of Arabidopsis
            thaliana (thale cress)
          Length = 2103

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 57   ttctgcacacgacaatgcattga 79
            |||| ||||||||||||||||||
Sbjct: 1796 ttcttcacacgacaatgcattga 1818



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>gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, complete sequence
          Length = 199128

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 89     agctgagctgagcttccgc 107
              |||||||||||||||||||
Sbjct: 101444 agctgagctgagcttccgc 101426



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>gb|AY088703.1| Arabidopsis thaliana clone 92281 mRNA, complete sequence
          Length = 495

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 57  ttctgcacacgacaatgcattga 79
           |||| ||||||||||||||||||
Sbjct: 177 ttcttcacacgacaatgcattga 199



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>gb|AF172996.1|AF172996 Trypanosoma congolense glucose transporter (HT2) gene, complete cds
          Length = 3402

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 10  ggaacatcacaccatcgac 28
           |||||||||||||||||||
Sbjct: 709 ggaacatcacaccatcgac 691



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>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0686E09
          Length = 156425

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 63    acacgacaatgcattgacc 81
             |||||||||||||||||||
Sbjct: 70122 acacgacaatgcattgacc 70104



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>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0635G10
          Length = 146728

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 14    catcacaccatcgacttcattat 36
             |||||||||||||| ||||||||
Sbjct: 64549 catcacaccatcgaattcattat 64527



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>dbj|AP003808.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1115_C05
          Length = 146585

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 63     acacgacaatgcattgacc 81
              |||||||||||||||||||
Sbjct: 122089 acacgacaatgcattgacc 122071



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>dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111P14, full
            insert sequence
          Length = 3941

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 37   tgggcaaaacaagggattt 55
            |||||||||||||||||||
Sbjct: 1147 tgggcaaaacaagggattt 1165



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>emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in linkage group 4, complete
              sequence
          Length = 227565

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 40     gcaaaacaagggatttttt 58
              |||||||||||||||||||
Sbjct: 225395 gcaaaacaagggatttttt 225377



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>gb|AF162335.1|AF162335 Mytilus galloprovincialis antimicrobial peptide precursor myticin B
           mRNA, complete cds
          Length = 681

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 21  ccatcgacttcattattgg 39
           |||||||||||||||||||
Sbjct: 271 ccatcgacttcattattgg 253



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>gb|AF162334.1|AF162334 Mytilus galloprovincialis antimicrobial peptide precursor myticin A
           mRNA, complete cds
          Length = 692

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 21  ccatcgacttcattattgg 39
           |||||||||||||||||||
Sbjct: 328 ccatcgacttcattattgg 310



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>gb|AF032097.1|AF032097 Trypanosoma congolense glucose transporter (TcoHT2) gene, complete
           cds
          Length = 3085

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 10  ggaacatcacaccatcgac 28
           |||||||||||||||||||
Sbjct: 709 ggaacatcacaccatcgac 691



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>gb|AF032096.1|AF032096 Trypanosoma congolense glucose transporter (TcoHT1) gene, complete
           cds
          Length = 2703

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 10  ggaacatcacaccatcgac 28
           |||||||||||||||||||
Sbjct: 709 ggaacatcacaccatcgac 691


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 918,283
Number of Sequences: 3902068
Number of extensions: 918283
Number of successful extensions: 98473
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98271
Number of HSP's gapped (non-prelim): 202
length of query: 131
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 110
effective length of database: 17,151,101,840
effective search space: 1886621202400
effective search space used: 1886621202400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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