| Clone Name | rbast48g07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 180 bits (91), Expect = 7e-43 Identities = 100/103 (97%) Strand = Plus / Minus Query: 29 ttcattattgggcaaaacaagggattttttctgcacacgacaatgcattgaccggtagcc 88 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837 Query: 89 agctgagctgagcttccgcatgccgatcaaacccgtcgggcac 131 ||||||||||||||||||||||||||||| |||||||| |||| Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcac 2794
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence Length = 1129 Score = 56.0 bits (28), Expect = 3e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 22 catcgacttcattattgggcaaaacaagggattttttctgcacacgac 69 ||||||||| ||||||||||||| |||||| |||||||| ||||||| Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgac 1052
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 46.1 bits (23), Expect = 0.025 Identities = 26/27 (96%) Strand = Plus / Minus Query: 52 attttttctgcacacgacaatgcattg 78 |||||||| |||||||||||||||||| Sbjct: 2128108 attttttccgcacacgacaatgcattg 2128082
>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence Length = 37711 Score = 42.1 bits (21), Expect = 0.39 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 aaacaagggattttttctgca 63 ||||||||||||||||||||| Sbjct: 32565 aaacaagggattttttctgca 32585
>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24, complete sequence Length = 155584 Score = 42.1 bits (21), Expect = 0.39 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 gcaaaacaagggattttttct 60 ||||||||||||||||||||| Sbjct: 39634 gcaaaacaagggattttttct 39614
>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin (LOC579890), mRNA Length = 1542 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 ggagggaacatcacaccatc 25 |||||||||||||||||||| Sbjct: 1457 ggagggaacatcacaccatc 1438
>ref|NM_119712.4| Arabidopsis thaliana protein binding AT4G35470 mRNA, complete cds Length = 2474 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 57 ttctgcacacgacaatgcattga 79 |||| |||||||||||||||||| Sbjct: 1965 ttcttcacacgacaatgcattga 1987
>ref|XM_473438.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2700 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 acacgacaatgcattgacc 81 ||||||||||||||||||| Sbjct: 896 acacgacaatgcattgacc 878
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 tgggcaaaacaagggattt 55 ||||||||||||||||||| Sbjct: 3842397 tgggcaaaacaagggattt 3842415
>gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosome 5, complete sequence Length = 187121 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 ccagctgagctgagcttcc 105 ||||||||||||||||||| Sbjct: 93147 ccagctgagctgagcttcc 93129
>emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02, complete sequence Length = 173522 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 acacgacaatgcattgacc 81 ||||||||||||||||||| Sbjct: 85603 acacgacaatgcattgacc 85585
>emb|AL161587.2|ATCHRIV83 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83 Length = 197859 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 57 ttctgcacacgacaatgcattga 79 |||| |||||||||||||||||| Sbjct: 113254 ttcttcacacgacaatgcattga 113276
>emb|AL117188.1|ATF15J1 Arabidopsis thaliana DNA chromosome 4, BAC clone F15J1, partial sequence (ESSA project) Length = 27408 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 57 ttctgcacacgacaatgcattga 79 |||| |||||||||||||||||| Sbjct: 14903 ttcttcacacgacaatgcattga 14925
>emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in linkage group 4, complete sequence Length = 157981 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 gcaaaacaagggatttttt 58 ||||||||||||||||||| Sbjct: 129429 gcaaaacaagggatttttt 129411
>emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, complete sequence Length = 140774 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 gcaaaacaagggatttttt 58 ||||||||||||||||||| Sbjct: 89166 gcaaaacaagggatttttt 89184
>gb|AY128730.1| Arabidopsis thaliana putative protein (At4g35470) mRNA, complete cds Length = 1891 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 57 ttctgcacacgacaatgcattga 79 |||| |||||||||||||||||| Sbjct: 1735 ttcttcacacgacaatgcattga 1757
>gb|AY072324.1| Arabidopsis thaliana putative protein (At4g35470; F15J1.40) mRNA, complete cds Length = 2363 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 57 ttctgcacacgacaatgcattga 79 |||| |||||||||||||||||| Sbjct: 1965 ttcttcacacgacaatgcattga 1987
>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11, complete sequence Length = 132151 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 tgggcaaaacaagggattt 55 ||||||||||||||||||| Sbjct: 121021 tgggcaaaacaagggattt 121039
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 acacgacaatgcattgacc 81 ||||||||||||||||||| Sbjct: 27654974 acacgacaatgcattgacc 27654956
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 14 catcacaccatcgacttcattat 36 |||||||||||||| |||||||| Sbjct: 22022485 catcacaccatcgaattcattat 22022463
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 acacgacaatgcattgacc 81 ||||||||||||||||||| Sbjct: 16782177 acacgacaatgcattgacc 16782159
>gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, complete sequence Length = 185162 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 89 agctgagctgagcttccgc 107 ||||||||||||||||||| Sbjct: 29471 agctgagctgagcttccgc 29453
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 tgggcaaaacaagggattt 55 ||||||||||||||||||| Sbjct: 3842508 tgggcaaaacaagggattt 3842526
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 acacgacaatgcattgacc 81 ||||||||||||||||||| Sbjct: 24489738 acacgacaatgcattgacc 24489720
>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0015N19, complete sequence Length = 168430 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 tgggcaaaacaagggattt 55 ||||||||||||||||||| Sbjct: 48870 tgggcaaaacaagggattt 48888
>emb|BX828819.1|CNS0A2KS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL41ZG08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2103 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 57 ttctgcacacgacaatgcattga 79 |||| |||||||||||||||||| Sbjct: 1796 ttcttcacacgacaatgcattga 1818
>gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, complete sequence Length = 199128 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 89 agctgagctgagcttccgc 107 ||||||||||||||||||| Sbjct: 101444 agctgagctgagcttccgc 101426
>gb|AY088703.1| Arabidopsis thaliana clone 92281 mRNA, complete sequence Length = 495 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 57 ttctgcacacgacaatgcattga 79 |||| |||||||||||||||||| Sbjct: 177 ttcttcacacgacaatgcattga 199
>gb|AF172996.1|AF172996 Trypanosoma congolense glucose transporter (HT2) gene, complete cds Length = 3402 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 ggaacatcacaccatcgac 28 ||||||||||||||||||| Sbjct: 709 ggaacatcacaccatcgac 691
>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0686E09 Length = 156425 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 acacgacaatgcattgacc 81 ||||||||||||||||||| Sbjct: 70122 acacgacaatgcattgacc 70104
>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0635G10 Length = 146728 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 14 catcacaccatcgacttcattat 36 |||||||||||||| |||||||| Sbjct: 64549 catcacaccatcgaattcattat 64527
>dbj|AP003808.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1115_C05 Length = 146585 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 acacgacaatgcattgacc 81 ||||||||||||||||||| Sbjct: 122089 acacgacaatgcattgacc 122071
>dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111P14, full insert sequence Length = 3941 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 tgggcaaaacaagggattt 55 ||||||||||||||||||| Sbjct: 1147 tgggcaaaacaagggattt 1165
>emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in linkage group 4, complete sequence Length = 227565 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 gcaaaacaagggatttttt 58 ||||||||||||||||||| Sbjct: 225395 gcaaaacaagggatttttt 225377
>gb|AF162335.1|AF162335 Mytilus galloprovincialis antimicrobial peptide precursor myticin B mRNA, complete cds Length = 681 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 ccatcgacttcattattgg 39 ||||||||||||||||||| Sbjct: 271 ccatcgacttcattattgg 253
>gb|AF162334.1|AF162334 Mytilus galloprovincialis antimicrobial peptide precursor myticin A mRNA, complete cds Length = 692 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 ccatcgacttcattattgg 39 ||||||||||||||||||| Sbjct: 328 ccatcgacttcattattgg 310
>gb|AF032097.1|AF032097 Trypanosoma congolense glucose transporter (TcoHT2) gene, complete cds Length = 3085 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 ggaacatcacaccatcgac 28 ||||||||||||||||||| Sbjct: 709 ggaacatcacaccatcgac 691
>gb|AF032096.1|AF032096 Trypanosoma congolense glucose transporter (TcoHT1) gene, complete cds Length = 2703 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 ggaacatcacaccatcgac 28 ||||||||||||||||||| Sbjct: 709 ggaacatcacaccatcgac 691 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 918,283 Number of Sequences: 3902068 Number of extensions: 918283 Number of successful extensions: 98473 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98271 Number of HSP's gapped (non-prelim): 202 length of query: 131 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 110 effective length of database: 17,151,101,840 effective search space: 1886621202400 effective search space used: 1886621202400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)