ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbast48b04 |
|---|---|
| Clone Library Name | barley_pub |
>PDIA6_PONPY (Q5R6T1) Protein disulfide-isomerase A6 precursor (EC 5.3.4.1)| Length = 440 Score = 48.1 bits (113), Expect = 5e-06 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 2/61 (3%) Frame = -3 Query: 370 ITEFVKEAGRGGKGNLPLEGA--PTVVQSEPWDGKDGEVIEEDEFSLEELMADSSAPNDE 197 I EF++E G P+ G PT+V+ EPWDG+DGE+ ED+ L ++ D DE Sbjct: 381 INEFLRELSFGRGSTAPVGGGAFPTIVEREPWDGRDGELPVEDDIDLSDVELDDLG-KDE 439 Query: 196 L 194 L Sbjct: 440 L 440
>PDIA6_HUMAN (Q15084) Protein disulfide-isomerase A6 precursor (EC 5.3.4.1)| (Protein disulfide isomerase P5) (Thioredoxin domain-containing protein 7) Length = 440 Score = 48.1 bits (113), Expect = 5e-06 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 2/61 (3%) Frame = -3 Query: 370 ITEFVKEAGRGGKGNLPLEGA--PTVVQSEPWDGKDGEVIEEDEFSLEELMADSSAPNDE 197 I EF++E G P+ G PT+V+ EPWDG+DGE+ ED+ L ++ D DE Sbjct: 381 INEFLRELSFGRGSTAPVGGGAFPTIVEREPWDGRDGELPVEDDIDLSDVELDDLG-KDE 439 Query: 196 L 194 L Sbjct: 440 L 440
>PDIA6_MOUSE (Q922R8) Protein disulfide-isomerase A6 precursor (EC 5.3.4.1)| (Thioredoxin domain-containing protein 7) Length = 440 Score = 46.6 bits (109), Expect = 1e-05 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 2/61 (3%) Frame = -3 Query: 370 ITEFVKEAGRGGKGNLPLEGA--PTVVQSEPWDGKDGEVIEEDEFSLEELMADSSAPNDE 197 I EF++E G P+ G PT+ EPWDGKDGE+ ED+ L ++ D DE Sbjct: 381 INEFLRELSFGRGSTAPVGGGSFPTITPREPWDGKDGELPVEDDIDLSDVELD-DLEKDE 439 Query: 196 L 194 L Sbjct: 440 L 440
>PDIA6_RAT (Q63081) Protein disulfide-isomerase A6 precursor (EC 5.3.4.1)| (Protein disulfide isomerase P5) (Calcium-binding protein 1) (CaBP1) (Thioredoxin domain-containing protein 7) Length = 440 Score = 44.7 bits (104), Expect = 6e-05 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 2/61 (3%) Frame = -3 Query: 370 ITEFVKEAGRGGKGNLPLEGA--PTVVQSEPWDGKDGEVIEEDEFSLEELMADSSAPNDE 197 I EF++E G P+ G P + EPWDGKDGE+ ED+ L ++ D DE Sbjct: 381 INEFLRELSFGRGSTAPVGGGSFPNITPREPWDGKDGELPVEDDIDLSDVELD-DLEKDE 439 Query: 196 L 194 L Sbjct: 440 L 440
>PDIA6_MESAU (P38660) Protein disulfide-isomerase A6 precursor (EC 5.3.4.1)| (Protein disulfide isomerase P5) Length = 439 Score = 43.9 bits (102), Expect = 9e-05 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 2/61 (3%) Frame = -3 Query: 370 ITEFVKEAGRGGKGNLPLEGA--PTVVQSEPWDGKDGEVIEEDEFSLEELMADSSAPNDE 197 I EF++E G P+ G P + EPWDG+DGE+ ED+ L ++ D DE Sbjct: 380 INEFLRELSFGRASTAPVGGGSFPAITAREPWDGRDGELPVEDDIDLSDVELD-DLEKDE 438 Query: 196 L 194 L Sbjct: 439 L 439
>PDIA6_CAEEL (Q11067) Probable protein disulfide-isomerase A6 precursor (EC| 5.3.4.1) Length = 440 Score = 40.4 bits (93), Expect = 0.001 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%) Frame = -3 Query: 370 ITEFVKEA--GRGGKGNLPLEGAPTVVQSEPWDGKDGEVIEEDEFSLEELMADSS 212 I EF+++ G+G +L +G P + ++E WDGKDG + ED+ L ++ D + Sbjct: 384 IHEFLRDLSYGKGRTSSLRGDGFPKIQKTEKWDGKDGALPAEDDIDLSDIDLDKT 438
>PRPP_HUMAN (P81489) Salivary proline-rich protein II-1 (Fragment)| Length = 174 Score = 31.2 bits (69), Expect = 0.63 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +1 Query: 289 PTGPPSGRPPEEGCPFRRALPPSQ 360 P G P GRPP++G P + PP Q Sbjct: 100 PPGKPEGRPPQQGGPGKPERPPPQ 123
>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)| Length = 704 Score = 30.8 bits (68), Expect = 0.83 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +1 Query: 289 PTGPPSGRPPEEGCPFRRALPPSQTR 366 P PP+ RPP P R+A PP TR Sbjct: 538 PGAPPAARPPASPSPQRQAGPPQATR 563
>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)| Length = 705 Score = 30.8 bits (68), Expect = 0.83 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +1 Query: 289 PTGPPSGRPPEEGCPFRRALPPSQTR 366 P PP+ RPP P R+A PP TR Sbjct: 540 PGAPPAARPPASPSPQRQAGPPQATR 565
>SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)| Length = 415 Score = 30.8 bits (68), Expect = 0.83 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +1 Query: 289 PTGPPSGRPPEEGCPFRRALPPSQTR 366 P PP+ RPP P R+A PP TR Sbjct: 268 PGAPPAARPPASPSPQRQAGPPQATR 293
>SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)| Length = 706 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +1 Query: 289 PTGPPSGRPPEEGCPFRRALPPSQTR 366 P PP+ RPP P R+A PP TR Sbjct: 540 PGAPPATRPPASPSPQRQAGPPQATR 565
>PUR7_FUSNN (Q8REV1) Phosphoribosylaminoimidazole-succinocarboxamide synthase| (EC 6.3.2.6) (SAICAR synthetase) Length = 237 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = -3 Query: 370 ITEFVKEAGRGGKGNLPLEGAPTVVQSEPWDGKDGEVIEEDEF 242 + +F E G+ KG + L T WD K GE +++D F Sbjct: 173 LVDFKIEFGKNSKGEILLADEITPDTCRLWDKKTGEKLDKDRF 215
>PO2F1_XENLA (P16143) POU domain, class 2, transcription factor 1| (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1) (XOct1) Length = 760 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 5/61 (8%) Frame = +2 Query: 32 GHPHTLHT-----RAFSHNANIEIKKRHSKKCPVQIVQCTHQNK*SISVPLNATMVRESQ 196 GH H + +A +H+ N++ K + P+Q+VQ + Q ++P MV Q Sbjct: 66 GHLHQVQLAGTSLQAAAHSLNVQTKFKEEPGEPMQVVQPSQQPSLQAAIPQTQLMVAGGQ 125 Query: 197 L 199 + Sbjct: 126 I 126
>PRP40_MOUSE (Q9R1C7) Pre-mRNA-processing factor 40 homolog A (Formin-binding| protein 3) (Formin-binding protein 11) (FBP 11) Length = 953 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +1 Query: 94 KAFQKVSRPNCTVYTSKQVKHQCSSKRYHGSRITTRRWAQS 216 K F V C + SK KH SK++H R +R ++S Sbjct: 790 KDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSES 830
>IRF6_HUMAN (O14896) Interferon regulatory factor 6 (IRF-6)| Length = 467 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = -3 Query: 307 PTVVQSEPWDGKDGEVIEEDE 245 P S PWD KD +V EEDE Sbjct: 126 PGSTGSAPWDEKDNDVDEEDE 146
>ECO1_KLULA (Q6CW60) N-acetyltransferase ECO1 (EC 2.3.1.-) (Establishment of| cohesion protein 1) Length = 271 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Frame = +1 Query: 109 VSRPNCTV-YTSKQVKHQCSSKRYHGSRITTRRWAQS 216 V P C++ Y++ KRYH + +RW+QS Sbjct: 26 VKCPKCSITYSTNSPSDLVQHKRYHDLHLNGKRWSQS 62
>HMCN1_HUMAN (Q96RW7) Hemicentin-1 precursor (Fibulin-6) (FIBL-6)| Length = 5635 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 5/29 (17%) Frame = -2 Query: 365 RVCEGGRARR-----KGQPSSGGRPDGGP 294 R C GG+ RR PS+GGR GGP Sbjct: 4771 RTCNGGQMRRYRTCDNPPPSNGGRACGGP 4799
>DPYL4_HUMAN (O14531) Dihydropyrimidinase-related protein 4 (DRP-4) (Collapsin| response mediator protein 3) (CRMP-3) (UNC33-like phosphoprotein 4) (ULIP4 protein) Length = 572 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +1 Query: 283 MVPTGPPSGRPPEEGCPFRRALPP 354 MVP P SG P CP + ++PP Sbjct: 507 MVPAKPGSGAPARASCPGKISVPP 530
>BRCA1_BOVIN (Q864U1) Breast cancer type 1 susceptibility protein homolog| Length = 1849 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +2 Query: 8 ELVLFRGQGHPHTLHTRAFSHNANIEIKKRHSKKCPVQ 121 ELV+ R P+ S ++N E+KK+HS + PV+ Sbjct: 622 ELVVSRNPSLPNHTELPIDSSSSNEEMKKKHSSQMPVR 659
>FBXW7_DROME (Q9VZF4) F-box/WD-repeat protein 7 (F-box and WD-40 domain protein| 7) (Protein archipelago) Length = 1326 Score = 28.1 bits (61), Expect = 5.4 Identities = 28/92 (30%), Positives = 39/92 (42%) Frame = -3 Query: 376 AEITEFVKEAGRGGKGNLPLEGAPTVVQSEPWDGKDGEVIEEDEFSLEELMADSSAPNDE 197 A T V++ G + LE VV E G DG V+E +FS EE A+ DE Sbjct: 629 ANPTASVRQRRNGSSDVVHLE----VVVEEGAGGGDGGVVEPGDFSAEEPWANC----DE 680 Query: 196 L*FSNHGSV*RNTDASLVLMCTLYNLDGTLFG 101 N + L +CT N +G+ +G Sbjct: 681 ----------ENNCSDLEEICTCQNGNGSSYG 702
>RS3_HALSA (P15009) 30S ribosomal protein S3P (HS4) (HHAS3)| Length = 302 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%) Frame = -3 Query: 295 QSEPWDGKDGEVIEEDEFSLEEL--MADSSAPNDE 197 +SEP D +D EVIE D+ EEL +AD+ DE Sbjct: 238 ESEPADFEDEEVIETDDDVEEELDELADAVEGEDE 272
>HTPG_BURPS (Q63W07) Chaperone protein htpG (Heat shock protein htpG) (High| temperature protein G) Length = 632 Score = 27.7 bits (60), Expect = 7.0 Identities = 9/21 (42%), Positives = 16/21 (76%) Frame = -3 Query: 307 PTVVQSEPWDGKDGEVIEEDE 245 P +++ E WD + GE++E+DE Sbjct: 206 PILMKKEEWDQEKGEMVEKDE 226
>HTPG_BURMA (Q62ID1) Chaperone protein htpG (Heat shock protein htpG) (High| temperature protein G) Length = 632 Score = 27.7 bits (60), Expect = 7.0 Identities = 9/21 (42%), Positives = 16/21 (76%) Frame = -3 Query: 307 PTVVQSEPWDGKDGEVIEEDE 245 P +++ E WD + GE++E+DE Sbjct: 206 PILMKKEEWDQEKGEMVEKDE 226
>MA2B2_PONPY (Q5RDJ3) Epididymis-specific alpha-mannosidase precursor (EC| 3.2.1.24) (Mannosidase alpha class 2B member 2) Length = 1009 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -2 Query: 350 GRARRKGQPSSGGRPDGGPVGTM 282 G RR+G +S RP GGP+ T+ Sbjct: 972 GSGRRRGDTTSPSRPPGGPIITV 994
>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)| Length = 706 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +1 Query: 289 PTGPPSGRPPEEGCPFRRALPPSQTR 366 P PP+ RPP P R+A P TR Sbjct: 540 PGAPPAARPPASPSPQRQAGAPQATR 565
>PRP40_HUMAN (O75400) Pre-mRNA-processing factor 40 homolog A (Formin-binding| protein 3) (Huntingtin yeast partner A) (Huntingtin-interacting protein HYPA/FBP11) (Fas ligand-associated factor 1) (NY-REN-6 antigen) Length = 957 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = +1 Query: 94 KAFQKVSRPNCTVYTSKQVKHQCSSKRYHGSRITTRRWAQS 216 K F V C + SK KH SK++H R +R + S Sbjct: 794 KDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDS 834
>CB029_HUMAN (Q9UKZ1) Protein C2orf29| Length = 510 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/45 (33%), Positives = 18/45 (40%) Frame = -2 Query: 353 GGRARRKGQPSSGGRPDGGPVGTMXXXXXXXXXXXRVLARGAHGG 219 GGR G P SG GGP G M +++ A GG Sbjct: 39 GGRGGASG-PGSGSGGPGGPAGRMSLTPKELSSLLSIISEEAGGG 82
>SMRD2_RAT (O54772) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily D member 2 (60 kDa BRG-1/Brm-associated factor subunit B) (BRG1-associated factor 60B) Length = 456 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = +1 Query: 295 GPPSGRPPEEGCPFRRALPPSQTR*FRR 378 GPP+G P P R +PP+ FR+ Sbjct: 15 GPPAGSPFGTAAPLRPGMPPTMMDPFRK 42
>SMRD2_MOUSE (Q99JR8) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily D member 2 (60 kDa BRG-1/Brm-associated factor subunit B) (BRG1-associated factor 60B) Length = 456 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = +1 Query: 295 GPPSGRPPEEGCPFRRALPPSQTR*FRR 378 GPP+G P P R +PP+ FR+ Sbjct: 15 GPPAGSPFGTAAPLRPGMPPTMMDPFRK 42
>RSMB_MONDO (Q9TU66) Small nuclear ribonucleoprotein-associated protein B'| (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/26 (46%), Positives = 13/26 (50%) Frame = +1 Query: 289 PTGPPSGRPPEEGCPFRRALPPSQTR 366 P GPP G PP G P +PP R Sbjct: 198 PMGPPMGMPPGRGAPM--GMPPPGMR 221
>RSMB_CHICK (Q9PV94) Small nuclear ribonucleoprotein-associated protein B'| (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/26 (46%), Positives = 13/26 (50%) Frame = +1 Query: 289 PTGPPSGRPPEEGCPFRRALPPSQTR 366 P GPP G PP G P +PP R Sbjct: 198 PMGPPMGMPPGRGAPM--GMPPPGMR 221 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,208,804 Number of Sequences: 219361 Number of extensions: 1051505 Number of successful extensions: 4109 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3773 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4100 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
