ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast47d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YL35_CAEEL (P34426) Hypothetical protein F44B9.5 30 3.0
2ARCA_BACLD (O86131) Arginine deiminase (EC 3.5.3.6) (ADI) (Argin... 29 3.9
3HNF1B_PIG (Q03365) Hepatocyte nuclear factor 1-beta (HNF-1beta) ... 28 8.8

>YL35_CAEEL (P34426) Hypothetical protein F44B9.5|
          Length = 390

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 165 CYLQCSRIISFHTLMVHCNILQLVFEKIG 79
           C L+ S  +  HTL + C+IL +V EK G
Sbjct: 61  CLLRKSAALRMHTLRIMCSILGIVVEKSG 89



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>ARCA_BACLD (O86131) Arginine deiminase (EC 3.5.3.6) (ADI) (Arginine|
           dihydrolase) (AD)
          Length = 413

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -1

Query: 383 GASSCKCHECRHVSIPSYCVYDMNTCTVSLVSLGGGHQLESARSEW 246
           G ++ + H     ++P      +    V+L+  GGG ++ SAR +W
Sbjct: 306 GKTADEIHTTEEHNLPEVLKRTLGLSDVNLIFCGGGDEIASAREQW 351



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>HNF1B_PIG (Q03365) Hepatocyte nuclear factor 1-beta (HNF-1beta) (HNF-1B)|
           (Variant hepatic nuclear factor 1) (VHNF1) (FPC-binding
           protein) (FPCB)
          Length = 559

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 47  NNHMHTHELAPPIFSNTS 100
           N+HM+TH+  PP +S+TS
Sbjct: 511 NSHMYTHKQEPPQYSHTS 528


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,602,837
Number of Sequences: 219361
Number of extensions: 1094500
Number of successful extensions: 2397
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2397
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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