ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast47d01 |
|---|---|
| Clone Library Name | barley_pub |
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 65.9 bits (159), Expect = 2e-11 Identities = 40/90 (44%), Positives = 47/90 (52%), Gaps = 11/90 (12%) Frame = -3 Query: 406 PKQFGFKQGPLKTCCGGGGPYNFNPTASCG-----------VRGSSVCADPSAYANWDGV 260 P++ GF + PL TCCG GG YNF+ TA CG V GS CA PS NWDG Sbjct: 293 PEKHGF-EFPLITCCGYGGKYNFSVTAPCGDTVTADDGTKIVVGS--CACPSVRVNWDGA 349 Query: 259 HLTEAAYHAIADSILHGPYTSPRLL*PPAC 170 H TEAA D I G ++ P + AC Sbjct: 350 HYTEAANEYFFDQISTGAFSDPPVPLNMAC 379
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 56.2 bits (134), Expect = 2e-08 Identities = 32/71 (45%), Positives = 37/71 (52%), Gaps = 9/71 (12%) Frame = -3 Query: 394 GFKQGPLKTCCGGGGPYNFNPTASCG----VRGSSV-----CADPSAYANWDGVHLTEAA 242 GFK G L +CCG GG YN+N CG V+G V C +P WDGVH T+AA Sbjct: 295 GFK-GSLVSCCGHGGKYNYNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQAA 353 Query: 241 YHAIADSILHG 209 I D I G Sbjct: 354 NKFIFDKIAPG 364
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 40.0 bits (92), Expect = 0.001 Identities = 22/59 (37%), Positives = 30/59 (50%) Frame = -3 Query: 406 PKQFGFKQGPLKTCCGGGGPYNFNPTASCGVRGSSVCADPSAYANWDGVHLTEAAYHAI 230 P +GF++ K CC G + A C S +C + S+Y WDGVH T+ AY I Sbjct: 466 PAAYGFEETK-KPCCKTG---LLSAGALCKKSTSKICPNTSSYLFWDGVHPTQRAYKTI 520
>SNIP_MOUSE (Q9QWI6) p130Cas-associated protein (p140Cap) (SNAP-25-interacting| protein) (SNIP) Length = 1250 Score = 31.2 bits (69), Expect = 0.61 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Frame = +3 Query: 279 YADGSAHTLDPRTPQLA--VGLKLYGPPPPQHVFSGP 383 Y DG L P +PQ V GPPPP +SGP Sbjct: 528 YGDGYGFRLPPSSPQKLADVSAPSGGPPPPHSPYSGP 564
>SNIP_RAT (Q9QXY2) p130Cas-associated protein (p140Cap) (SNAP-25-interacting| protein) (SNIP) Length = 1197 Score = 31.2 bits (69), Expect = 0.61 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Frame = +3 Query: 279 YADGSAHTLDPRTPQLA--VGLKLYGPPPPQHVFSGP 383 Y DG L P +PQ V GPPPP +SGP Sbjct: 496 YGDGYGFRLPPSSPQKLADVSAPSGGPPPPHSPYSGP 532
>SNIP_HUMAN (Q9C0H9) p130Cas-associated protein (p140Cap) (SNAP-25-interacting| protein) (SNIP) Length = 1055 Score = 30.8 bits (68), Expect = 0.80 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Frame = +3 Query: 279 YADGSAHTLDPRTPQLA--VGLKLYGPPPPQHVFSGP 383 Y DG L P +PQ V GPPPP +SGP Sbjct: 334 YGDGYGFRLPPSSPQKLADVAAPPGGPPPPHSPYSGP 370
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +3 Query: 264 PSQLAYADGSAHTLDPRTPQLAVGLKLYGPPPPQHVFSG 380 P + + GS H L P +P L+ PPPP HV +G Sbjct: 412 PGGSSPSPGSGHPLPPASPHHVPPLQ-QQPPPPPHVSAG 449
>AMER1_HUMAN (Q9Y4X0) AMME syndrome candidate gene 1 protein| Length = 333 Score = 28.5 bits (62), Expect = 4.0 Identities = 25/86 (29%), Positives = 38/86 (44%) Frame = -3 Query: 394 GFKQGPLKTCCGGGGPYNFNPTASCGVRGSSVCADPSAYANWDGVHLTEAAYHAIADSIL 215 G P + C GGGG +P SCGV ++ + P+A + + + + A S Sbjct: 67 GCTLSPPQGCGGGGGGIALSPPPSCGV--GTLLSTPAAATS------SSPSSSSAASSSS 118 Query: 214 HGPYTSPRLL*PPACFCFCFSSVLAC 137 G S +++ CFCF VL C Sbjct: 119 PG---SRKMVVSAEMCCFCF-DVLYC 140
>ITA10_HUMAN (O75578) Integrin alpha-10 precursor| Length = 1167 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = +3 Query: 207 GPWRMLSAMAW*AASVRWTPSQLAYADGSAHTLDPRTPQLAVG 335 G W M + A+ WT A DGS L PR +L+VG Sbjct: 690 GRWDHQFYMRFTASLDEWTAGARAAFDGSGQRLSPRRLRLSVG 732
>FOXE1_MOUSE (Q8R2I0) Forkhead box protein E1 (Thyroid transcription factor 2)| (TTF-2) Length = 371 Score = 28.1 bits (61), Expect = 5.2 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Frame = -3 Query: 361 GGGGPYNFNPTASCGVRGSSVCADPSAYANWDGVHL--TEAAYHAIADSILHGPYTSP 194 G G +F P G R + A +AYA DG + +A A A L GP + P Sbjct: 250 GAAGTGSFQPAVCTGARPVNPAAYAAAYAGPDGAYPQGASSALFAAAAGRLAGPASPP 307
>GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX)| (Endo-1,4-beta-glucanase) (Cellulase) (Fragment) Length = 224 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -3 Query: 316 VRGSSVCADPSAYANWDGVHLTEAAYHAIAD 224 V+ S + D + +WDG+HL+E Y IA+ Sbjct: 101 VKLSEIQFDRNTDISWDGLHLSEIGYTKIAN 131
>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1853 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = +3 Query: 246 ASVRWTPSQLAYADGSAHTLDPRTPQLAVGLKLYGPPPPQHVFSGPCLNP 395 +S +++PS Y+ S + P +PQ + Y P P + S P NP Sbjct: 1720 SSPKYSPSSPTYSPTSP-SYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNP 1768
>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1852 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = +3 Query: 246 ASVRWTPSQLAYADGSAHTLDPRTPQLAVGLKLYGPPPPQHVFSGPCLNP 395 +S +++PS Y+ S + P +PQ + Y P P + S P NP Sbjct: 1719 SSPKYSPSSPTYSPTSP-SYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNP 1767
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%) Frame = -3 Query: 406 PKQFGFKQGPLKTCCG----GGGPYNFNPTASCGVRGSSVCADPSAYANWDGVHLTEAAY 239 P+ +GF++ K CC GG + C R ++ S+Y WDG+H ++ AY Sbjct: 383 PEDYGFEEIK-KPCCKIGLTKGGVF-------CKERTLKNMSNASSYLFWDGLHPSQRAY 434
>LECB_PHYAM (Q9AVB0) Lectin-B precursor (PL-B)| Length = 361 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = -3 Query: 403 KQFGFKQGPLKTCCGGGGPYNFNPTASCGVRGSSVC 296 + FGF+ P + CC GG N A CG S C Sbjct: 258 RNFGFRTCPNELCCSSGGWCGSN-DAHCGKGCQSQC 292
>PGCB_FELCA (P41725) Brevican core protein precursor (Brain-enriched| hyaluronan-binding protein) (BEHAB protein) (Fragment) Length = 417 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = -3 Query: 331 TASCGVRGSSVCADPSAYANWDGVHLTEAAYHAIADSILHGPYTSP 194 TA C RG+ + YA WDG L + +AD + P +P Sbjct: 274 TAYCRERGAEIATTGQLYAAWDG-GLDRCSPGWLADGSVRYPIVTP 318
>MSRA_PSEPK (Q88QZ8) Peptide methionine sulfoxide reductase msrA (EC 1.8.4.6)| (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase) Length = 222 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = -3 Query: 337 NPTASCGVRGSSVCADPSAYAN 272 NP CG+ G+ VC PS N Sbjct: 201 NPDGYCGIGGTGVCLPPSLQGN 222
>ESC1_SCHPO (Q04635) Protein esc1| Length = 413 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +1 Query: 37 GSTSLPPRSSLFCPVGRPQPLH 102 G T LPP + L P RPQP H Sbjct: 62 GQTRLPPINCLAEPFNRPQPWH 83 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,286,985 Number of Sequences: 219361 Number of extensions: 771382 Number of successful extensions: 2658 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2509 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2655 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
