ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbast47c08 |
|---|---|
| Clone Library Name | barley_pub |
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 71.6 bits (174), Expect = 9e-13 Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Frame = -2 Query: 451 YADIYSPLKDMVDHPDEYGFVEASKGCCGTGLMEMGPLC-TDLVPTCAKPSEFMFWDSVH 275 Y DIY+ + M++ P YGF E K CC TGL+ G LC C S ++FWD VH Sbjct: 452 YMDIYTIISQMLETPAAYGFEETKKPCCKTGLLSAGALCKKSTSKICPNTSSYLFWDGVH 511 Query: 274 PTQATYKAVAEHFIR 230 PTQ YK + + I+ Sbjct: 512 PTQRAYKTINKVLIK 526
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 62.0 bits (149), Expect = 7e-10 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 1/67 (1%) Frame = -2 Query: 451 YADIYSPLKDMVDHPDEYGFVEASKGCCGTGLMEMGPLCTD-LVPTCAKPSEFMFWDSVH 275 Y DIYS M++ P++YGF E K CC GL + G C + + + S ++FWD +H Sbjct: 369 YGDIYSIFSKMLESPEDYGFEEIKKPCCKIGLTKGGVFCKERTLKNMSNASSYLFWDGLH 428 Query: 274 PTQATYK 254 P+Q Y+ Sbjct: 429 PSQRAYE 435
>HLT_VIBPA (Q99289) Thermolabile hemolysin precursor (TL) (Lecithin-dependent| haemolysin) (LDH) (Atypical phospholipase) (Phospholipase A2) (Lysophospholipase) Length = 418 Score = 42.4 bits (98), Expect = 6e-04 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 8/82 (9%) Frame = -2 Query: 445 DIYSPLKDMVDHPDEYGFVEASKGCCGTGLMEMGPLCTDLVPTCAKPSE--------FMF 290 D ++ + + P+E+GFV AS C D + T A SE F+F Sbjct: 333 DTHALFETLTSAPEEHGFVNASDPCLDINRSSS----VDYMYTHALRSECAASGAEKFVF 388 Query: 289 WDSVHPTQATYKAVAEHFIRTN 224 WD HPT AT++ VAE + ++ Sbjct: 389 WDVTHPTTATHRYVAEKMLESS 410
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 35.4 bits (80), Expect = 0.073 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%) Frame = -2 Query: 451 YADIYSPLKDMVDHPDEYGFVEASKGCCGTG---LMEMGPLC----------TDLVPTCA 311 Y D+YS ++ H +GF + CCG G G C + C Sbjct: 277 YVDVYSLKHELFVHAQGHGFKGSLVSCCGHGGKYNYNKGIGCGMKKIVKGKEVYIGKPCD 336 Query: 310 KPSEFMFWDSVHPTQATYKAV 248 +P + + WD VH TQA K + Sbjct: 337 EPDKAVVWDGVHFTQAANKFI 357
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 34.7 bits (78), Expect = 0.12 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 13/76 (17%) Frame = -2 Query: 451 YADIYSPLKDMVDHPDEYGFVEASKGCCGTG---LMEMGPLCTD----------LVPTCA 311 + DIYS + P+++GF CCG G + C D +V +CA Sbjct: 279 HVDIYSVKYSLFSEPEKHGFEFPLITCCGYGGKYNFSVTAPCGDTVTADDGTKIVVGSCA 338 Query: 310 KPSEFMFWDSVHPTQA 263 PS + WD H T+A Sbjct: 339 CPSVRVNWDGAHYTEA 354
>LIP1_PHOLU (P40601) Lipase 1 precursor (EC 3.1.1.3) (Triacylglycerol lipase)| Length = 645 Score = 32.3 bits (72), Expect = 0.62 Identities = 18/71 (25%), Positives = 33/71 (46%) Frame = -2 Query: 445 DIYSPLKDMVDHPDEYGFVEASKGCCGTGLMEMGPLCTDLVPTCAKPSEFMFWDSVHPTQ 266 D+ + L +++ +P YGF+ C G+ D +KP F+F D HPT Sbjct: 276 DVNALLHEVIANPLRYGFLNTIGYACAQGVNAGSCRSKDTGFDASKP--FLFADDFHPTP 333 Query: 265 ATYKAVAEHFI 233 + V+++ + Sbjct: 334 EAHHIVSQYTV 344
>PP2B_EMENI (P48457) Serine/threonine-protein phosphatase 2B catalytic subunit| (EC 3.1.3.16) (Calmodulin-dependent calcineurin A subunit) Length = 530 Score = 32.3 bits (72), Expect = 0.62 Identities = 15/47 (31%), Positives = 21/47 (44%) Frame = -2 Query: 322 PTCAKPSEFMFWDSVHPTQATYKAVAEHFIRTNIIRFVN*MRFWLTQ 182 P KPS+ FWD PT+ + + +HF R R W+ Q Sbjct: 20 PALNKPSDDQFWDPEEPTKPNLQFLKQHFYREG--RLTEDQALWIIQ 64
>AT2B3_RAT (Q64568) Plasma membrane calcium-transporting ATPase 3 (EC 3.6.3.8)| (PMCA3) (Plasma membrane calcium pump isoform 3) (Plasma membrane calcium ATPase isoform 3) Length = 1258 Score = 32.0 bits (71), Expect = 0.80 Identities = 24/88 (27%), Positives = 39/88 (44%) Frame = +2 Query: 17 LLSLRRHVISDRRELRNIYISQIQFGFHPLDRRPELEYNQPSLASLDTDPIRTVCLCQPK 196 LL ++++ ELR GF P DR ++ + + D +RT+C+ Sbjct: 605 LLKKCTNILNSNGELR---------GFRPRDRDDMVK---KIIEPMACDGLRTICIAYRD 652 Query: 197 PHSIDEPDDVGPNEVFGDSLVGGLRGVD 280 +I EPD NEV GD + G++ Sbjct: 653 FSAIQEPDWDNENEVVGDLTCIAVVGIE 680
>SAHH_PLAF7 (P50250) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (PfSAHH) Length = 479 Score = 31.2 bits (69), Expect = 1.4 Identities = 23/87 (26%), Positives = 34/87 (39%) Frame = -2 Query: 406 DEYGFVEASKGCCGTGLMEMGPLCTDLVPTCAKPSEFMFWDSVHPTQATYKAVAEHFIRT 227 +EYG + K TG + M C L+ T K + W S + A A Sbjct: 36 EEYGKDQPLKNAKITGCLHMTVECALLIETLQKLGAQIRWCSCNIYSTADYAAAAVSTLE 95 Query: 226 NIIRFVN*MRFWLTQTHGSYWVCVQAS 146 N+ F W +T YW CV+++ Sbjct: 96 NVTVFA-----WKNETLEEYWWCVESA 117
>GHT5_SCHPO (P78831) High-affinity glucose transporter ght5 (Hexose transporter| 5) Length = 546 Score = 30.0 bits (66), Expect = 3.1 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%) Frame = -2 Query: 460 QGRYADIYSPLKDMVDHPDEYGFVEASKGCCGTGLMEMGP-----LCTDLVPTCAKPSEF 296 Q R+AD Y+P+ D Y + A +G TG++ +G L + L+ K + Sbjct: 37 QSRFADRYNPV------TDSYSYSSARQGLI-TGMVNVGSFFGCFLSSPLMDRIGKRTSI 89 Query: 295 MFWDSVH 275 MFW V+ Sbjct: 90 MFWTIVY 96
>AT2B3_HUMAN (Q16720) Plasma membrane calcium-transporting ATPase 3 (EC 3.6.3.8)| (PMCA3) (Plasma membrane calcium pump isoform 3) (Plasma membrane calcium ATPase isoform 3) Length = 1220 Score = 30.0 bits (66), Expect = 3.1 Identities = 23/88 (26%), Positives = 39/88 (44%) Frame = +2 Query: 17 LLSLRRHVISDRRELRNIYISQIQFGFHPLDRRPELEYNQPSLASLDTDPIRTVCLCQPK 196 LL ++++ ELR GF P DR + + + + D +RT+C+ Sbjct: 605 LLKKCTNILNSNGELR---------GFRPRDRDDMV---RKIIEPMACDGLRTICIAYRD 652 Query: 197 PHSIDEPDDVGPNEVFGDSLVGGLRGVD 280 ++ EPD NEV GD + G++ Sbjct: 653 FYAGQEPDWDNENEVVGDLTCIAVVGIE 680
>TRPB_METKA (Q8TX91) Tryptophan synthase beta chain (EC 4.2.1.20)| Length = 398 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/51 (31%), Positives = 22/51 (43%) Frame = -1 Query: 332 GSGPDLREAIRVHVLGLCPPHAGHLQGCRRTLHSDQHHPVRQLNAVLADTD 180 G G D E H LC G L GCR + D+H +R +++ D Sbjct: 261 GKGLDTDE----HSASLCAGEVGVLHGCRTKVLQDEHGQIRPTHSIAPGLD 307
>SOK1_YEAST (P40317) Protein SOK1| Length = 901 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = +2 Query: 50 RRELRNIYISQIQFGFHPLDRRPEL-EYNQPSLASLDTDPIRTVCL 184 +R+L NIY + +Q + +RPE+ +YN+ L L D +R V L Sbjct: 414 KRQLANIYWNDVQNEIYVYSKRPEIFQYNRSRLVPL-FDTLRDVLL 458
>XKR8_PANTR (Q49LS0) XK-related protein 8| Length = 395 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = -1 Query: 368 WHWAHGDGAAVHGSGPDLREAIRVHVLGLCPPHAGHLQGCRRTL 237 W W D A +HGS P R +H+L L G+L C + L Sbjct: 65 WLWLRADPAGLHGSQPPRRCLALLHLLQL-----GYLYRCVQEL 103
>XKR8_HUMAN (Q9H6D3) XK-related protein 8| Length = 395 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = -1 Query: 368 WHWAHGDGAAVHGSGPDLREAIRVHVLGLCPPHAGHLQGCRRTL 237 W W D A +HGS P R +H+L L G+L C + L Sbjct: 65 WLWLRADPAGLHGSQPPRRCLALLHLLQL-----GYLYRCVQEL 103
>CBIO_METKA (Q8TYV9) Cobalt import ATP-binding protein cbiO| Length = 268 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/71 (22%), Positives = 28/71 (39%) Frame = -1 Query: 377 GLLWHWAHGDGAAVHGSGPDLREAIRVHVLGLCPPHAGHLQGCRRTLHSDQHHPVRQLNA 198 GL G+ V G + + H+LGL P GH++ L +++ Sbjct: 14 GLSLRVKEGESVVVLGPNGSGKTTLLHHILGLLTPTKGHIRVLGHDLPDGVREVRKRIGV 73 Query: 197 VLADTDTRFLL 165 V D D + ++ Sbjct: 74 VFQDVDDQLIM 84
>PAR6A_RAT (Q6B4M5) Partitioning defective 6 homolog alpha (PAR-6 alpha)| (PAR-6A) (PAR-6) Length = 346 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -2 Query: 370 CGTGLMEMGPLCTDLVPTCAKPS 302 C GL + GPLC DL P C PS Sbjct: 294 CSNGLSQ-GPLCWDLQPGCLHPS 315
>GCAT_AERHY (P10480) Phosphatidylcholine-sterol acyltransferase precursor (EC| 2.3.1.43) (Glycerophospholipid-cholesterol acyltransferase) (GCAT) Length = 335 Score = 28.9 bits (63), Expect = 6.8 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = -2 Query: 295 MFWDSVHPTQATYKAVAE 242 MFWD VHPT + A++E Sbjct: 303 MFWDQVHPTTVVHAALSE 320
>ZN408_HUMAN (Q9H9D4) Zinc finger protein 408 (PR-domain zinc finger protein 17)| Length = 720 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Frame = +2 Query: 98 HPLDRRPELEYNQPSLASLDTDPIRTVCLCQPKPHSID--EPDDVGP 232 H L RPE + PS+ S ++P TV L Q +P +D ++V P Sbjct: 625 HQLSHRPEAPCSPPSVPSAASEP--TVVLLQAEPQLLDTHREEEVSP 669
>Y053_HAEIN (Q57517) Hypothetical zinc-type alcohol dehydrogenase-like protein| HI0053 Length = 342 Score = 28.5 bits (62), Expect = 8.9 Identities = 30/94 (31%), Positives = 41/94 (43%) Frame = +2 Query: 176 VCLCQPKPHSIDEPDDVGPNEVFGDSLVGGLRGVDRVPEHEL*WLRAGRDQIRAQRPHLH 355 VC Q P SI + +V G + GG++ V R P H L D + + L Sbjct: 92 VCCGQCYPCSIGRTNCCESLKVIGVHIDGGMQEVIRHPAH---LLTKVPDNLPIHQLPLA 148 Query: 356 EPSATAALARLNETVLVGVVDHVLEGAVDVGVTA 457 EP T AL L+ T L V+ GA +G+ A Sbjct: 149 EP-LTIALHALHRTTLKSGEHIVIIGAGAIGLMA 181
>DLX3B_BRARE (Q01702) Homeobox protein Dlx3b (DLX-3) (Distal-less homeobox| protein 3b) Length = 269 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +3 Query: 279 TESQNMNSDGFAQVGTRSVHSGPISMSPVPQQPLLASTKPYSSGWS 416 ++S NS V + HS ++ +PQ P L+ST PY +S Sbjct: 198 SDSMACNSPPSPAVWDNNAHSSQVNRGQIPQPP-LSSTPPYMEDYS 242
>FOXN1_MOUSE (Q61575) Forkhead box protein N1 (Transcription factor winged-helix| nude) (Hepatocyte nuclear factor 3 forkhead homolog 11) (HNF-3/forkhead homolog 11) (HFH-11) Length = 648 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +2 Query: 101 PLDRRPELEYNQPSLASLDTDPIRTVCLCQPKPHS 205 P +R P L + PS+AS D + I+ C P P S Sbjct: 56 PPERTPSLPPHSPSIASPDPEQIQGHCTAGPGPGS 90
>PTPA2_GIBZE (Q4INW6) Serine/threonine-protein phosphatase 2A activator 2 (EC| 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-2) (PPIase PTPA-2) (Rotamase PTPA-2) (Phosphotyrosyl phosphatase activator 2) Length = 432 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +3 Query: 303 DGFAQVGTRSVHSGPISMSPVPQQPLLASTKPYSSGWS 416 D ++ R SGP + +P+P+ P L + SS W+ Sbjct: 28 DRLPKLEPRKRRSGPSNPTPIPETPALPTPPDTSSNWT 65 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,932,410 Number of Sequences: 219361 Number of extensions: 1469980 Number of successful extensions: 4118 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3998 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4111 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
