>GCC2_MOUSE (Q8CHG3) GRIP and coiled-coil domain-containing protein 2 (Golgi|
            coiled coil protein GCC185)
          Length = 1679

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -1

Query: 406  ELDDLEAE-VRFTDTLEWDDKSRISKDVKSFLSPIREKLGTFEQELKDR 263
            EL D+ AE +   D+LE   KS   KD  S +  + EK+ + E+E KD+
Sbjct: 909  ELQDVRAELILLKDSLE---KSPSVKDQLSLVKELEEKIESLEKESKDK 954

>SYW_BORBU (O51038) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)|
           (Tryptophan--tRNA ligase) (TrpRS)
          Length = 353

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -1

Query: 406 ELDDLEAEVRFTDTLEWDDKSRISKDVKSFLSPIREKLGTFEQELKD 266
           E++DL++  +     + + K ++   + SFL PIR+K   +E + KD
Sbjct: 258 EVEDLKSRYKKGKVGDVEVKKKLFLALNSFLKPIRDKRSFYEAKKKD 304

>ODPAT_HUMAN (P29803) Pyruvate dehydrogenase E1 component alpha subunit,|
           testis-specific form, mitochondrial precursor (EC
           1.2.4.1) (PDHE1-A type II)
          Length = 388

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -1

Query: 214 HSCSSDYLCCVGLSVAV*TRGHVILVSPVSVRLHGL 107
           H C     CCVGL   +    HVI     S R HG+
Sbjct: 90  HLCDGQEACCVGLEAGINPSDHVI----TSYRAHGV 121

>RMUC_SHIFL (P0AG73) DNA recombination protein rmuC|
          Length = 475

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = -1

Query: 355 DDKSRISKDVKSFLSPIREKLGTFEQELKDR*G-NAGRRHAL 233
           D+++R S  + S LSP+RE+L  F ++++D  G  A  RH L
Sbjct: 131 DEQNRQS--LNSLLSPLREQLDGFRRQVQDSFGKEAQERHTL 170

>RMUC_ECOLI (P0AG71) DNA recombination protein rmuC|
          Length = 475

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = -1

Query: 355 DDKSRISKDVKSFLSPIREKLGTFEQELKDR*G-NAGRRHAL 233
           D+++R S  + S LSP+RE+L  F ++++D  G  A  RH L
Sbjct: 131 DEQNRQS--LNSLLSPLREQLDGFRRQVQDSFGKEAQERHTL 170

>RMUC_ECO57 (P0AG72) DNA recombination protein rmuC|
          Length = 475

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = -1

Query: 355 DDKSRISKDVKSFLSPIREKLGTFEQELKDR*G-NAGRRHAL 233
           D+++R S  + S LSP+RE+L  F ++++D  G  A  RH L
Sbjct: 131 DEQNRQS--LNSLLSPLREQLDGFRRQVQDSFGKEAQERHTL 170

>VU47_HHV6Z (P52549) Glycoprotein U47 precursor|
          Length = 738

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = -2

Query: 375 SPIPLNGTTSRGSARM*NHSFLPSGRSWVPSSKS 274
           SP P+N TTS G A +  HS L +  S  PSS S
Sbjct: 216 SPKPINVTTSFGRAIVNFHSILTTTPSSTPSSTS 249

>ODPAT_MOUSE (P35487) Pyruvate dehydrogenase E1 component alpha subunit,|
           testis-specific form, mitochondrial precursor (EC
           1.2.4.1) (PDHE1-A type II)
          Length = 391

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = -1

Query: 214 HSCSSDYLCCVGLSVAV*TRGHVILVSPVSVRLHG 110
           H C     CCVGL   +    HVI     S R HG
Sbjct: 93  HLCDGQEACCVGLEAGINPTDHVI----TSYRAHG 123

>AHPF_STAAU (O05204) Alkyl hydroperoxide reductase subunit F (EC 1.6.4.-)|
          Length = 507

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 403 LDDLEAEVRFTDTLEWDDKSRISKDVKSFLSPIREKLGTFEQELK 269
           L+ +E  V F  +L  DDKS+  KD+ + ++ +  +L   E+ LK
Sbjct: 14  LELMEGNVEFVASLGSDDKSKELKDLLTEITDMSPRLSLSEKSLK 58

>AHPF_STAAC (Q5HIR6) Alkyl hydroperoxide reductase subunit F (EC 1.6.4.-)|
          Length = 507

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 403 LDDLEAEVRFTDTLEWDDKSRISKDVKSFLSPIREKLGTFEQELK 269
           L+ +E  V F  +L  DDKS+  KD+ + ++ +  +L   E+ LK
Sbjct: 14  LELMEGNVEFVASLGSDDKSKELKDLLTEITDMSPRLSLSEKSLK 58


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,704,759
Number of Sequences: 219361
Number of extensions: 1244805
Number of successful extensions: 2961
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2960
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)