ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast47b04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones B... 82 2e-12
2gb|AC092699.2| Homo sapiens chromosome 8, clone RP11-570A24, com... 48 0.023
3gb|AC027043.7| Homo sapiens chromosome 8, clone RP11-769H18, com... 48 0.023
4emb|CT571264.2| Medicago truncatula chromosome 5 clone mth2-146m... 44 0.35
5emb|AL157911.4|CNS01RGB Human chromosome 14 DNA sequence BAC R-1... 44 0.35
6emb|AL163853.4|CNS05TBM Human chromosome 14 DNA sequence BAC R-2... 44 0.35
7gb|AC165245.2| Mus musculus BAC clone RP24-376N22 from chromosom... 42 1.4
8gb|AF124526.1| Orchestia cavimana orchestin precursor (orchestin... 42 1.4
9ref|XM_468395.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.5
10gb|AC113548.22| Mus musculus chromosome 9, clone RP23-268F15, co... 40 5.5
11emb|AL160154.11| Human DNA sequence from clone RP11-447N10 on ch... 40 5.5
12emb|AL138756.23| Human DNA sequence from clone RP11-4O1 on chrom... 40 5.5
13emb|AL136117.12| Human DNA sequence from clone CTC-1333E1 on chr... 40 5.5
14emb|AJ290956.2|DME290956 Drosophila melanogaster eIF2g gene for ... 40 5.5
15emb|BX511261.12| Zebrafish DNA sequence from clone DKEYP-59G7 in... 40 5.5
16gb|AC149874.2| Xenopus tropicalis clone CH216-146M19, complete s... 40 5.5
17gb|AC104984.14| Homo sapiens chromosome 17, clone RP11-354P11, c... 40 5.5
18gb|AC011846.16| Homo sapiens chromosome 15, clone RP11-346A8, co... 40 5.5
19emb|BX247866.12| Zebrafish DNA sequence from clone DKEY-216J12 i... 40 5.5
20gb|AC009904.7| Drosophila melanogaster, chromosome 3R, region 88... 40 5.5
21gb|AC153361.5| Mus musculus BAC clone RP23-291L20 from chromosom... 40 5.5
22gb|AC106741.3| Homo sapiens chromosome 16 clone RP11-105F24, com... 40 5.5
23dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
24gb|AC151332.2| Xenopus tropicalis clone ISB-315C6, complete sequ... 40 5.5
25gb|AC007648.6|AC007648 Drosophila melanogaster, chromosome 3R, r... 40 5.5
26gb|AC009506.5| Homo sapiens BAC clone RP11-542H1 from 2, complet... 40 5.5
27gb|AC010145.10| Homo sapiens BAC clone RP11-355H10 from 2, compl... 40 5.5
28dbj|AP005111.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
29dbj|AK131002.1| Homo sapiens cDNA FLJ27492 fis, clone SYN03530 40 5.5
30emb|CT033816.7| Zebrafish DNA sequence from clone CH211-109N19 i... 40 5.5
31dbj|AK071879.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
32gb|AE003708.3| Drosophila melanogaster chromosome 3R, section 46... 40 5.5
33dbj|AP002372.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.5
34emb|AL929094.13| Mouse DNA sequence from clone RP23-33L3 on chro... 40 5.5
35emb|AL772376.6| Mouse DNA sequence from clone RP23-30F6 on chrom... 40 5.5
36gb|AC002422.1|AC002422 Human Chromosome X, complete sequence 40 5.5
37gb|AC138459.3| Mus musculus BAC clone RP23-335K20 from 10, compl... 40 5.5
38emb|AL772285.9| Mouse DNA sequence from clone RP23-76I24 on chro... 40 5.5
39emb|AL627405.17| Mouse DNA sequence from clone RP23-183D11 on ch... 40 5.5 
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus
              region
          Length = 129099

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 93/109 (85%), Gaps = 1/109 (0%)
 Strand = Plus / Minus

                                                                          
Query: 18     gatcctaaataaatgg-agaaaaaaccctatgcatcatctgccaattctaggaattaaac 76
              |||||| ||||||||| ||||||  |||| |||||||  || |||||||||||||| |||
Sbjct: 105431 gatcctcaataaatgggagaaaactccctgtgcatcacgtgtcaattctaggaattgaac 105372

                                                               
Query: 77     tcggatcgttatgctacacaaccgcatgaccaaccattgagctaaggct 125
              |||| |||||  ||| |||||||||||| ||||||| ||||| ||||||
Sbjct: 105371 tcgggtcgttgggctgcacaaccgcatgcccaaccactgagccaaggct 105323



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 81/96 (84%), Gaps = 1/96 (1%)
 Strand = Plus / Minus

                                                                         
Query: 18    gatcctaaataaatg-gagaaaaaaccctatgcatcatctgccaattctaggaattaaac 76
             |||||| |||||||| |||||||  |||| |||||||  || |||||||||||||| |||
Sbjct: 93070 gatcctcaataaatgagagaaaactccctgtgcatcacgtgtcaattctaggaattgaac 93011

                                                 
Query: 77    tcggatcgttatgctacacaaccgcatgaccaacca 112
             |||| |||||  ||| || ||||||||| |||||||
Sbjct: 93010 tcgggtcgttgggctgcataaccgcatgcccaacca 92975
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>gb|AC092699.2| Homo sapiens chromosome 8, clone RP11-570A24, complete sequence
          Length = 121448

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 24    aaataaatggagaaaaaaccctat 47
             ||||||||||||||||||||||||
Sbjct: 48968 aaataaatggagaaaaaaccctat 48991
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>gb|AC027043.7| Homo sapiens chromosome 8, clone RP11-769H18, complete sequence
          Length = 155821

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 24   aaataaatggagaaaaaaccctat 47
            ||||||||||||||||||||||||
Sbjct: 1666 aaataaatggagaaaaaaccctat 1689
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>emb|CT571264.2| Medicago truncatula chromosome 5 clone mth2-146m15, COMPLETE SEQUENCE
          Length = 141614

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 230   ttcttgatttcatatcaagaat 251
             ||||||||||||||||||||||
Sbjct: 61468 ttcttgatttcatatcaagaat 61489
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>emb|AL157911.4|CNS01RGB Human chromosome 14 DNA sequence BAC R-16B13 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175548

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 210    attcacatgatcattagcattt 231
              ||||||||||||||||||||||
Sbjct: 120636 attcacatgatcattagcattt 120657
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>emb|AL163853.4|CNS05TBM Human chromosome 14 DNA sequence BAC R-248B10 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 157985

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 210   attcacatgatcattagcattt 231
             ||||||||||||||||||||||
Sbjct: 29528 attcacatgatcattagcattt 29549
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>gb|AC165245.2| Mus musculus BAC clone RP24-376N22 from chromosome 9, complete sequence
          Length = 217074

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 23    taaataaatggagaaaaaaccctat 47
             |||||||||||||||||| ||||||
Sbjct: 33893 taaataaatggagaaaaatccctat 33917
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>gb|AF124526.1| Orchestia cavimana orchestin precursor (orchestin) gene, complete
           cds
          Length = 2551

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 210 attcacatgatcattagcatt 230
           |||||||||||||||||||||
Sbjct: 169 attcacatgatcattagcatt 189
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>ref|XM_468395.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3897

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 28 aaatggagaaaaaaccctatgcat 51
          ||||||||||||||||| ||||||
Sbjct: 42 aaatggagaaaaaaccccatgcat 65
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>gb|AC113548.22| Mus musculus chromosome 9, clone RP23-268F15, complete sequence
          Length = 195273

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    cctaaataaatggagaaaaa 40
             ||||||||||||||||||||
Sbjct: 63597 cctaaataaatggagaaaaa 63616
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>emb|AL160154.11| Human DNA sequence from clone RP11-447N10 on chromosome 13 Contains a
             CpG island, complete sequence
          Length = 157379

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   tcacatgatcattagcattt 231
             ||||||||||||||||||||
Sbjct: 84932 tcacatgatcattagcattt 84951
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>emb|AL138756.23| Human DNA sequence from clone RP11-4O1 on chromosome 9q31.3-33.1
             Contains the 3' end of gene DKFZP761E1824, complete
             sequence
          Length = 189156

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   tcacatgatcattagcattt 231
             ||||||||||||||||||||
Sbjct: 32746 tcacatgatcattagcattt 32765
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>emb|AL136117.12| Human DNA sequence from clone CTC-1333E1 on chromosome 6, complete
             sequence
          Length = 86514

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 211   ttcacatgatcattagcatttctt 234
             |||| |||||||||||||||||||
Sbjct: 39532 ttcagatgatcattagcatttctt 39509
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>emb|AJ290956.2|DME290956 Drosophila melanogaster eIF2g gene for eukaryotic translation
            initiation factor 2 gamma subunit and Su(var)3-9 gene for
            histone-lysine N-methyltransferase, H3 lysine-9 specific
          Length = 11411

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 22   ctaaataaatggagaaaaaa 41
            ||||||||||||||||||||
Sbjct: 8893 ctaaataaatggagaaaaaa 8912
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>emb|BX511261.12| Zebrafish DNA sequence from clone DKEYP-59G7 in linkage group 1,
             complete sequence
          Length = 185266

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    taaataaatggagaaaaaac 42
             ||||||||||||||||||||
Sbjct: 28200 taaataaatggagaaaaaac 28181
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>gb|AC149874.2| Xenopus tropicalis clone CH216-146M19, complete sequence
          Length = 175117

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     ctaaataaatggagaaaaaa 41
              ||||||||||||||||||||
Sbjct: 162103 ctaaataaatggagaaaaaa 162122
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>gb|AC104984.14| Homo sapiens chromosome 17, clone RP11-354P11, complete sequence
          Length = 175136

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 212    tcacatgatcattagcattt 231
              ||||||||||||||||||||
Sbjct: 131964 tcacatgatcattagcattt 131983
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>gb|AC011846.16| Homo sapiens chromosome 15, clone RP11-346A8, complete sequence
          Length = 147760

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 212    tcacatgatcattagcattt 231
              ||||||||||||||||||||
Sbjct: 128009 tcacatgatcattagcattt 128028
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>emb|BX247866.12| Zebrafish DNA sequence from clone DKEY-216J12 in linkage group 1,
              complete sequence
          Length = 197473

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     taaataaatggagaaaaaac 42
              ||||||||||||||||||||
Sbjct: 113253 taaataaatggagaaaaaac 113272
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>gb|AC009904.7| Drosophila melanogaster, chromosome 3R, region 88E-88E, BAC clone
              BACR32A03, complete sequence
          Length = 182601

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     ctaaataaatggagaaaaaa 41
              ||||||||||||||||||||
Sbjct: 167865 ctaaataaatggagaaaaaa 167846
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>gb|AC153361.5| Mus musculus BAC clone RP23-291L20 from chromosome 10, complete
             sequence
          Length = 212761

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    taaataaatggagaaaaaac 42
             ||||||||||||||||||||
Sbjct: 73500 taaataaatggagaaaaaac 73481
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>gb|AC106741.3| Homo sapiens chromosome 16 clone RP11-105F24, complete sequence
          Length = 176424

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    atcctaaataaatggagaaa 38
             ||||||||||||||||||||
Sbjct: 96744 atcctaaataaatggagaaa 96763
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 28       aaatggagaaaaaaccctatgcat 51
                ||||||||||||||||| ||||||
Sbjct: 35000696 aaatggagaaaaaaccccatgcat 35000719
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>gb|AC151332.2| Xenopus tropicalis clone ISB-315C6, complete sequence
          Length = 97419

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    aaatggagaaaaaaccctat 47
             ||||||||||||||||||||
Sbjct: 56749 aaatggagaaaaaaccctat 56730
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>gb|AC007648.6|AC007648 Drosophila melanogaster, chromosome 3R, region 88E-88F, BAC clone
             BACR13A02, complete sequence
          Length = 166141

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    ctaaataaatggagaaaaaa 41
             ||||||||||||||||||||
Sbjct: 16899 ctaaataaatggagaaaaaa 16880
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>gb|AC009506.5| Homo sapiens BAC clone RP11-542H1 from 2, complete sequence
          Length = 191764

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     taaataaatggagaaaaaac 42
              ||||||||||||||||||||
Sbjct: 150134 taaataaatggagaaaaaac 150115
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>gb|AC010145.10| Homo sapiens BAC clone RP11-355H10 from 2, complete sequence
          Length = 198960

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    agcatttcttgatttcatat 244
              ||||||||||||||||||||
Sbjct: 114124 agcatttcttgatttcatat 114105
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>dbj|AP005111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0643F09
          Length = 161001

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 28    aaatggagaaaaaaccctatgcat 51
             ||||||||||||||||| ||||||
Sbjct: 61037 aaatggagaaaaaaccccatgcat 61060
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>dbj|AK131002.1| Homo sapiens cDNA FLJ27492 fis, clone SYN03530
          Length = 661

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 212 tcacatgatcattagcattt 231
           ||||||||||||||||||||
Sbjct: 27  tcacatgatcattagcattt 8
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>emb|CT033816.7| Zebrafish DNA sequence from clone CH211-109N19 in linkage group 1,
              complete sequence
          Length = 166556

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     taaataaatggagaaaaaac 42
              ||||||||||||||||||||
Sbjct: 163560 taaataaatggagaaaaaac 163541
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>dbj|AK071879.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042C23,
          full insert sequence
          Length = 3897

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 28 aaatggagaaaaaaccctatgcat 51
          ||||||||||||||||| ||||||
Sbjct: 42 aaatggagaaaaaaccccatgcat 65
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>gb|AE003708.3| Drosophila melanogaster chromosome 3R, section 46 of 118 of the
             complete sequence
          Length = 236375

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    ctaaataaatggagaaaaaa 41
             ||||||||||||||||||||
Sbjct: 61331 ctaaataaatggagaaaaaa 61312
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>dbj|AP002372.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-203C2, complete
             sequence
          Length = 145255

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   tcacatgatcattagcattt 231
             ||||||||||||||||||||
Sbjct: 31898 tcacatgatcattagcattt 31917
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>emb|AL929094.13| Mouse DNA sequence from clone RP23-33L3 on chromosome 2, complete
             sequence
          Length = 166610

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    attctaggaattaaactcgg 80
             ||||||||||||||||||||
Sbjct: 89668 attctaggaattaaactcgg 89649
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>emb|AL772376.6| Mouse DNA sequence from clone RP23-30F6 on chromosome 4, complete
            sequence
          Length = 237323

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 22   ctaaataaatggagaaaaaa 41
            ||||||||||||||||||||
Sbjct: 1797 ctaaataaatggagaaaaaa 1816
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>gb|AC002422.1|AC002422 Human Chromosome X, complete sequence
          Length = 160091

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    tgccaattctaggaattaaa 75
             ||||||||||||||||||||
Sbjct: 99579 tgccaattctaggaattaaa 99598
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>gb|AC138459.3| Mus musculus BAC clone RP23-335K20 from 10, complete sequence
          Length = 222461

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    taaataaatggagaaaaaac 42
             ||||||||||||||||||||
Sbjct: 61723 taaataaatggagaaaaaac 61742
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>emb|AL772285.9| Mouse DNA sequence from clone RP23-76I24 on chromosome 4, complete
              sequence
          Length = 153899

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     ctaaataaatggagaaaaaa 41
              ||||||||||||||||||||
Sbjct: 153696 ctaaataaatggagaaaaaa 153715
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>emb|AL627405.17| Mouse DNA sequence from clone RP23-183D11 on chromosome 4, complete
             sequence
          Length = 193847

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    aaataaatggagaaaaaacc 43
             ||||||||||||||||||||
Sbjct: 50413 aaataaatggagaaaaaacc 50394


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,435,158
Number of Sequences: 3902068
Number of extensions: 3435158
Number of successful extensions: 74259
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74198
Number of HSP's gapped (non-prelim): 61
length of query: 410
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 388
effective length of database: 17,147,199,772
effective search space: 6653113511536
effective search space used: 6653113511536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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