ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast47a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FBLN1_BRARE (O42182) Fibulin-1 precursor 30 2.0
2DAPA_RALSO (Q8Y099) Dihydrodipicolinate synthase (EC 4.2.1.52) (... 28 4.4

>FBLN1_BRARE (O42182) Fibulin-1 precursor|
          Length = 681

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
 Frame = +2

Query: 143 DHTKIITSSQACYKVNPL----HFCATSERCFSQMDT*NLSRRIDCSRLY 280
           D  K+ T  + C  +N      H C T ERC + + +    R I C   Y
Sbjct: 180 DGFKLKTDGKHCEDINECLLGPHHCVTGERCINTLGSYRCQREISCGTGY 229



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>DAPA_RALSO (Q8Y099) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)|
          Length = 294

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 238 YLKSIKKDRLL*IIPEISSPQQEVRRLHFR 327
           Y KS+  D  L ++P  + P QE   LHFR
Sbjct: 93  YAKSVGADASLQVVPYYNKPTQEGMYLHFR 122


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,124,283
Number of Sequences: 219361
Number of extensions: 790915
Number of successful extensions: 1205
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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