ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast47a10 |
|---|---|
| Clone Library Name | barley_pub |
>SYNPO_MOUSE (Q8CC35) Synaptopodin| Length = 929 Score = 32.0 bits (71), Expect = 0.37 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%) Frame = +1 Query: 58 SIFHNKAPEN*NAKLGSTKLQPK*CSISVWSIW--------MDDSTSSATKERSIDGRLG 213 S++H PEN + TK QP S++++ +TSS T R++ R Sbjct: 773 SLYHGYLPENGVLRPEPTKQQPYQMRPSLYALSPVKEPAKASSRATSSRTPSRTVSPRAA 832 Query: 214 QHLPPATRPEGMNAVPSLPVIQVNHLPDCPPPDR 315 PA +P ++ VP+LP + P P P R Sbjct: 833 S---PA-KPSSLDLVPNLPRAGLPPSPALPRPSR 862
>SYNPO_RAT (Q9Z327) Synaptopodin| Length = 931 Score = 31.6 bits (70), Expect = 0.49 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 4/90 (4%) Frame = +1 Query: 58 SIFHNKAPEN*NAKLGSTKLQPK*CSISVWSIWMDDS----TSSATKERSIDGRLGQHLP 225 S++H PEN + TK QP S++++ +S AT R+ + Sbjct: 775 SLYHGYLPENGVLRPEPTKQQPHQMRPSLYALSPVKEPAKISSRATSSRASSRTVSPRAA 834 Query: 226 PATRPEGMNAVPSLPVIQVNHLPDCPPPDR 315 +P ++ VP+LP + P P P R Sbjct: 835 SPAKPSSLDLVPNLPRAGLPPSPALPRPSR 864
>AMY6_HORVU (P04750) Alpha-amylase type B isozyme precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (Clones GRAMY56 and 963) Length = 429 Score = 31.6 bits (70), Expect = 0.49 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -1 Query: 312 IGWWAVRKVVYLDNWKTGYSIHTFWP 235 IGWW + V ++DN TG + H WP Sbjct: 300 IGWWPAKAVTFVDNHDTGSTQH-MWP 324
>AMY4_HORVU (P04748) Alpha-amylase type B isozyme (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (Clone 103) (Fragment) Length = 153 Score = 31.6 bits (70), Expect = 0.49 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -1 Query: 312 IGWWAVRKVVYLDNWKTGYSIHTFWP 235 IGWW + V ++DN TG + H WP Sbjct: 24 IGWWPAKAVTFVDNHDTGSTQH-MWP 48
>AMY3_HORVU (P04747) Alpha-amylase type B isozyme precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (Clone PHV19) (Fragment) Length = 368 Score = 31.6 bits (70), Expect = 0.49 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -1 Query: 312 IGWWAVRKVVYLDNWKTGYSIHTFWP 235 IGWW + V ++DN TG + H WP Sbjct: 298 IGWWPAKAVTFVDNHDTGSTQH-MWP 322
>AMY2_HORVU (P04063) Alpha-amylase type B isozyme precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (AMY2-2) (High pI alpha-amylase) Length = 427 Score = 31.6 bits (70), Expect = 0.49 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -1 Query: 312 IGWWAVRKVVYLDNWKTGYSIHTFWP 235 IGWW + V ++DN TG + H WP Sbjct: 298 IGWWPAKAVTFVDNHDTGSTQH-MWP 322
>AMC2_ORYSA (P27941) Alpha-amylase isozyme C2 precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) Length = 445 Score = 30.8 bits (68), Expect = 0.83 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -1 Query: 312 IGWWAVRKVVYLDNWKTGYSIHTFWP 235 IGWW + V ++DN TG S WP Sbjct: 299 IGWWPAKAVTFVDNHDTG-STQQMWP 323
>AM2A_ORYSA (P27935) Alpha-amylase isozyme 2A precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) Length = 445 Score = 30.8 bits (68), Expect = 0.83 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -1 Query: 312 IGWWAVRKVVYLDNWKTGYSIHTFWP 235 IGWW + V ++DN TG S WP Sbjct: 299 IGWWPAKAVTFVDNHDTG-STQQMWP 323
>AMY1_ORYSA (P17654) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) (Isozyme 1B) Length = 434 Score = 30.0 bits (66), Expect = 1.4 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -1 Query: 312 IGWWAVRKVVYLDNWKTGYSIHTFWP 235 IGWW + ++DN TG + H WP Sbjct: 305 IGWWPAKATTFVDNHDTGSTQH-LWP 329
>G3OX2_ARATH (Q9ZT84) Gibberellin 3-beta-dioxygenase 2 (EC 1.14.11.15)| (Gibberellin 3 beta-hydroxylase 2) (GA 3-oxidase 2) (AtGA3ox2) Length = 347 Score = 30.0 bits (66), Expect = 1.4 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = +1 Query: 271 VIQVNHLPDCPPPDR 315 VIQ+NH P CP PDR Sbjct: 204 VIQLNHYPKCPEPDR 218
>UDG_RHIME (O54068) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 437 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/47 (27%), Positives = 28/47 (59%) Frame = -2 Query: 275 ITGRLGTAFIPSGRVAGGKCCPNRPSMLLSFVAEDVESSIQIDHTEI 135 + GR+G+ F+ +G GG C P + ++ L A+D ++ +++ T + Sbjct: 246 LDGRIGSKFLHAGPGYGGSCFP-KDTLALVKTAQDHDTPVRLVETTV 291
>BLK_HUMAN (P51451) Tyrosine-protein kinase BLK (EC 2.7.10.2) (B lymphocyte| kinase) (p55-BLK) Length = 504 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +1 Query: 166 STSSATKERSIDGR-LGQHLPPATRPEGMNAVPSLPVIQVNHLPDCPPPDRH 318 S+ KE+ I + GQ P + +A P P++ NHL PPPD H Sbjct: 4 SSKKPDKEKPIKEKDKGQWSPLKVSAQDKDAPPLPPLVVFNHLTP-PPPDEH 54
>PTN23_RAT (O88902) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) (His-domain-containing protein tyrosine phosphatase) (HD-PTP) (Protein tyrosine phosphatase TD14) (PTP-TD14) (Fragment) Length = 1499 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +1 Query: 220 LPPATRPEGMNAVPSLPVIQVNHLPDCPPPD 312 LPPA+ PE A PS P + LP+ P P+ Sbjct: 1392 LPPASLPEPTPAPPSSPPPPSSPLPEPPQPE 1422
>AMY1_HORVU (P00693) Alpha-amylase type A isozyme precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (AMY1) (Low pI alpha-amylase) Length = 438 Score = 28.5 bits (62), Expect = 4.1 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = -1 Query: 312 IGWWAVRKVVYLDNWKTGYSIHTFWP 235 +GWW + ++DN TG S WP Sbjct: 300 MGWWPAKAATFVDNHDTG-STQAMWP 324
>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated| transcript 2) Length = 2161 Score = 28.1 bits (61), Expect = 5.4 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 4/56 (7%) Frame = +1 Query: 163 DSTSSATKERSIDGRLG----QHLPPATRPEGMNAVPSLPVIQVNHLPDCPPPDRH 318 DS S+A +E DG+ G LPP N+ PS +P PPP H Sbjct: 360 DSQSAAGEEPETDGKKGTSPGSELPPPKTAWTENSRPSETEPAAPPIPKPPPPPPH 415
>KIF14_HUMAN (Q15058) Kinesin-like protein KIF14| Length = 1648 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/33 (30%), Positives = 21/33 (63%) Frame = +2 Query: 149 RSGWMTPRPLQQRKEASMAGWDNIYLQLLGQKV 247 RSG +T +P Q + + + G N+Y + +G+++ Sbjct: 231 RSGHLTTKPTQSKLDIKVLGTGNLYHRSIGKEI 263
>ACSC_ACEXY (P37718) Cellulose synthase operon protein C precursor| Length = 1302 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 7/59 (11%) Frame = +2 Query: 59 LYSTIKHQRIEMLNLVVRSYNQNDALSQYGRSGWMTPR-------PLQQRKEASMAGWD 214 +Y KH+ +NL Y N+ YG+ G+ +P+ P++ + + WD Sbjct: 1144 VYRNRKHEVRVGVNLTYFGYKHNEDFYTYGQGGYFSPQSYFAATVPVRYSGHSGLFDWD 1202
>FA13A_BOVIN (Q8HYW0) Protein FAM13A1 (Precm1 protein)| Length = 697 Score = 27.7 bits (60), Expect = 7.0 Identities = 20/62 (32%), Positives = 24/62 (38%) Frame = +1 Query: 172 SSATKERSIDGRLGQHLPPATRPEGMNAVPSLPVIQVNHLPDCPPPDRHDCQHCKSLCLQ 351 S +KE DGR QHL T + PSLP ++ PD L L Sbjct: 183 SDGSKENEKDGRQSQHLENPTMK--IQEHPSLPDSKLQRTPDADDQQESFVSEVPELDLT 240 Query: 352 AL 357 AL Sbjct: 241 AL 242
>LRP10_MOUSE (Q7TQH7) Low-density lipoprotein receptor-related protein 10| precursor Length = 713 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/57 (29%), Positives = 26/57 (45%) Frame = +1 Query: 139 SVWSIWMDDSTSSATKERSIDGRLGQHLPPATRPEGMNAVPSLPVIQVNHLPDCPPP 309 SV S +DDST A + ++ G+ G+ PP + +LP + P P P Sbjct: 586 SVPSEALDDSTGQACEGGAVGGQDGEQAPPLPIKTPIPTPSTLPALATVSEPPGPLP 642
>MUCA_PSEAE (P38107) Sigma factor algU negative regulatory protein| Length = 194 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = +2 Query: 107 VRSYNQNDALSQYGRSGWMTPRPLQQRK-EASMAGW 211 VR YNQNDAL Q + G L Q K A +AG+ Sbjct: 103 VRLYNQNDALPQMAQQGTTPQIALPQVKGPAVLAGY 138
>YYVP_CAEEL (Q93834) Hypothetical protein F59C6.8| Length = 529 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = -3 Query: 262 WVQHSYLLAE*LEVNVVPTGHRCFFPLLQRTWSHPSRSTILR 137 W+ SY + E E V+P F+ L R W P T R Sbjct: 362 WIHRSYAIKEGFEQKVMPVDVNAFYHL--RIWKFPEVPTFNR 401
>CO8B_ONCMY (Q90X85) Complement component C8 beta chain precursor (Complement| component 8 beta subunit) Length = 587 Score = 27.3 bits (59), Expect = 9.2 Identities = 21/72 (29%), Positives = 27/72 (37%) Frame = +1 Query: 115 LQPK*CSISVWSIWMDDSTSSATKERSIDGRLGQHLPPATRPEGMNAVPSLPVIQVNHLP 294 +QP C S WS W K+R +L Q P P +Q + Sbjct: 52 VQPVDCVQSEWSSWT--RCDVCRKKRYRYAKLVQ-------PSQFGGEPCH--VQGKEVE 100 Query: 295 DCPPPDRHDCQH 330 C PP R+DC H Sbjct: 101 PCSPPSRYDCTH 112
>GRAP2_HUMAN (O75791) GRB2-related adapter protein 2 (GADS protein) (Growth| factor receptor-binding protein) (GRBLG) (Grf40 adapter protein) (Grf-40) (GRB-2-like protein) (GRB2L) (GRBX) (P38) (Hematopoietic cell-associated adapter protein GrpL) (Adapter p Length = 330 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Frame = +1 Query: 196 IDGRLGQHLPPATRPEGMNAVPSLPVIQVNHLPDCP---PPDRHDCQHCKSLCLQALHLH 366 + G +G+ + P+ + + P+LP+ Q H P P P + Q + LQ H H Sbjct: 170 LSGAVGEEIRPSMNRKLSDHPPTLPLQQHQHQPQPPQYAPAPQQLQQPPQQRYLQHHHFH 229 Query: 367 QQ 372 Q+ Sbjct: 230 QE 231 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,724,074 Number of Sequences: 219361 Number of extensions: 1229552 Number of successful extensions: 3459 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3338 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3458 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
