ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast47a10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY108427.1| Zea mays PCO132322 mRNA sequence 161 2e-36
2gb|BT017829.1| Zea mays clone EL01N0508G07.c mRNA sequence 153 5e-34
3gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJN... 147 3e-32
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 147 3e-32
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 147 3e-32
6dbj|AK109347.2| Oryza sativa (japonica cultivar-group) cDNA clon... 147 3e-32
7dbj|AK102421.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 3e-32
8dbj|AK061364.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 3e-32
9ref|XM_462955.1| Oryza sativa (japonica cultivar-group), predic... 141 2e-30
10ref|NM_104861.1| Arabidopsis thaliana oligosaccharide transporte... 44 0.32
11dbj|AK176101.1| Arabidopsis thaliana mRNA for hypothetical prote... 44 0.32
12gb|AC005882.1|AC005882 Arabidopsis thaliana chromosome I BAC T13... 44 0.32
13gb|AC103975.9| Homo sapiens chromosome 15, clone RP11-1001M11, c... 42 1.3
14gb|AC022748.10| Homo sapiens chromosome 15, clone RP11-160C18, c... 42 1.3
15gb|AC157948.5| Mus musculus BAC clone RP23-197K17 from chromosom... 42 1.3
16gb|AC149283.2| Mus musculus BAC clone RP23-233O21 from 7, comple... 42 1.3
17ref|NM_101029.1| Arabidopsis thaliana oligosaccharide transporte... 40 5.0
18ref|XM_655563.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 5.0
19gb|AC125331.4| Mus musculus chromosome 7 clone RP23-11L1, comple... 40 5.0
20gb|AC122245.5| Mus musculus BAC clone RP23-151P21 from 18, compl... 40 5.0
21gb|AC122828.3| Mus musculus BAC clone RP23-215B8 from 13, comple... 40 5.0
22emb|BX294025.1|NCB16M17 Neurospora crassa DNA linkage group V BA... 40 5.0
23gb|AC011661.5|AC011661 Genomic sequence for Arabidopsis thaliana... 40 5.0 
>gb|AY108427.1| Zea mays PCO132322 mRNA sequence
          Length = 860

 Score =  161 bits (81), Expect = 2e-36
 Identities = 138/157 (87%)
 Strand = Plus / Minus

                                                                       
Query: 222 acctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatccaggt 281
           |||||||||| |||||  |||||||||||||||| || ||||||||||||||||| | ||
Sbjct: 513 acctccagctgctcgggaagaaggtatgaatgctatagccagtcttccagttatctaagt 454

                                                                       
Query: 282 aaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaatcgct 341
           | | ||||||||| || ||||||||||||| | ||||||| || ||||| ||||  ||||
Sbjct: 453 agatcaccttcctaacagcccaccacccgaccaccatgacagcgagcatcgcaaggcgct 394

                                                
Query: 342 gtgtctgcaggctctccaccttcaccagcaagtgtgt 378
           ||||||||||||||||||||||||||| |||||||||
Sbjct: 393 gtgtctgcaggctctccaccttcaccaacaagtgtgt 357
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>gb|BT017829.1| Zea mays clone EL01N0508G07.c mRNA sequence
          Length = 1374

 Score =  153 bits (77), Expect = 5e-34
 Identities = 137/157 (87%)
 Strand = Plus / Minus

                                                                        
Query: 222  acctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatccaggt 281
            |||||||||| |||||  |||||||||||||||| || ||||||||||||||||| | ||
Sbjct: 1055 acctccagctgctcgggaagaaggtatgaatgctatagccagtcttccagttatctaagt 996

                                                                        
Query: 282  aaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaatcgct 341
            | | ||||||||| || ||||||||||||| | ||||||| || ||||| ||||  ||||
Sbjct: 995  agatcaccttcctaacagcccaccacccgaccaccatgacagcgagcatcgcaaggcgct 936

                                                 
Query: 342  gtgtctgcaggctctccaccttcaccagcaagtgtgt 378
            | ||||||||||||||||||||||||| |||||||||
Sbjct: 935  gcgtctgcaggctctccaccttcaccaacaagtgtgt 899
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>gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJNBa0084C09, complete
             sequence
          Length = 151269

 Score =  147 bits (74), Expect = 3e-32
 Identities = 140/162 (86%)
 Strand = Plus / Plus

                                                                         
Query: 217   catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 276
             ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 94535 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 94594

                                                                         
Query: 277   caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 336
             ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 94595 caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 94654

                                                       
Query: 337   tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgt 378
              |||||  ||||||||||||||||| ||||||||||||||||
Sbjct: 94655 acgctggatctgcaggctctccaccctcaccagcaagtgtgt 94696
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  147 bits (74), Expect = 3e-32
 Identities = 140/162 (86%)
 Strand = Plus / Plus

                                                                            
Query: 217      catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 276
                ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 20176451 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 20176510

                                                                            
Query: 277      caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 336
                ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 20176511 caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 20176570

                                                          
Query: 337      tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgt 378
                 |||||  ||||||||||||||||| ||||||||||||||||
Sbjct: 20176571 acgctggatctgcaggctctccaccctcaccagcaagtgtgt 20176612
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  147 bits (74), Expect = 3e-32
 Identities = 140/162 (86%)
 Strand = Plus / Plus

                                                                            
Query: 217      catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 276
                ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 20169478 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 20169537

                                                                            
Query: 277      caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 336
                ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 20169538 caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 20169597

                                                          
Query: 337      tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgt 378
                 |||||  ||||||||||||||||| ||||||||||||||||
Sbjct: 20169598 acgctggatctgcaggctctccaccctcaccagcaagtgtgt 20169639
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>dbj|AK109347.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G06, full
            insert sequence
          Length = 1273

 Score =  147 bits (74), Expect = 3e-32
 Identities = 140/162 (86%)
 Strand = Plus / Minus

                                                                        
Query: 217  catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 276
            ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 1032 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 973

                                                                        
Query: 277  caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 336
            ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 972  caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 913

                                                      
Query: 337  tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgt 378
             |||||  ||||||||||||||||| ||||||||||||||||
Sbjct: 912  acgctggatctgcaggctctccaccctcaccagcaagtgtgt 871
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>dbj|AK102421.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093D18, full
            insert sequence
          Length = 1398

 Score =  147 bits (74), Expect = 3e-32
 Identities = 140/162 (86%)
 Strand = Plus / Minus

                                                                        
Query: 217  catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 276
            ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 1052 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 993

                                                                        
Query: 277  caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 336
            ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 992  caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 933

                                                      
Query: 337  tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgt 378
             |||||  ||||||||||||||||| ||||||||||||||||
Sbjct: 932  acgctggatctgcaggctctccaccctcaccagcaagtgtgt 891
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>dbj|AK061364.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-D03, full
            insert sequence
          Length = 1328

 Score =  147 bits (74), Expect = 3e-32
 Identities = 140/162 (86%)
 Strand = Plus / Minus

                                                                        
Query: 217  catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 276
            ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 1047 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 988

                                                                        
Query: 277  caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 336
            ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 987  caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 928

                                                      
Query: 337  tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgt 378
             |||||  ||||||||||||||||| ||||||||||||||||
Sbjct: 927  acgctggatctgcaggctctccaccctcaccagcaagtgtgt 886
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>ref|XM_462955.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1011

 Score =  141 bits (71), Expect = 2e-30
 Identities = 137/159 (86%)
 Strand = Plus / Minus

                                                                        
Query: 220  ttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatccag 279
            |||||||||||| || |||||||||||||||||||| || ||||||||||||||||||| 
Sbjct: 1011 ttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatccaa 952

                                                                        
Query: 280  gtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaatcg 339
               || ||||||| | |||||||||||||| ||   |||||| |||||||| | ||| ||
Sbjct: 951  aagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaaacg 892

                                                   
Query: 340  ctgtgtctgcaggctctccaccttcaccagcaagtgtgt 378
            |||  ||||||||||||||||| ||||||||||||||||
Sbjct: 891  ctggatctgcaggctctccaccctcaccagcaagtgtgt 853
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>ref|NM_104861.1| Arabidopsis thaliana oligosaccharide transporter AT1G61790 mRNA,
            complete cds
          Length = 1041

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 260  ccagtcttccagttatccaggtaaac 285
            ||||||||||||||||||| ||||||
Sbjct: 1001 ccagtcttccagttatccaagtaaac 976
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>dbj|AK176101.1| Arabidopsis thaliana mRNA for hypothetical protein, partial cds,
           clone: RAFL22-88-K11
          Length = 345

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 260 ccagtcttccagttatccaggtaaac 285
           ||||||||||||||||||| ||||||
Sbjct: 77  ccagtcttccagttatccaagtaaac 52
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>gb|AC005882.1|AC005882 Arabidopsis thaliana chromosome I BAC T13M11 genomic sequence, complete
             sequence
          Length = 87394

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 260   ccagtcttccagttatccaggtaaac 285
             ||||||||||||||||||| ||||||
Sbjct: 67285 ccagtcttccagttatccaagtaaac 67260
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>gb|AC103975.9| Homo sapiens chromosome 15, clone RP11-1001M11, complete sequence
          Length = 213676

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 282   aaaccaccttcctgactgccc 302
             |||||||||||||||||||||
Sbjct: 22849 aaaccaccttcctgactgccc 22869
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>gb|AC022748.10| Homo sapiens chromosome 15, clone RP11-160C18, complete sequence
          Length = 163642

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 282    aaaccaccttcctgactgccc 302
              |||||||||||||||||||||
Sbjct: 120526 aaaccaccttcctgactgccc 120506
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>gb|AC157948.5| Mus musculus BAC clone RP23-197K17 from chromosome 7, complete
            sequence
          Length = 201846

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 352  gctctccaccttcaccagcaagtgt 376
            |||||| ||||||||||||||||||
Sbjct: 2447 gctctctaccttcaccagcaagtgt 2423
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>gb|AC149283.2| Mus musculus BAC clone RP23-233O21 from 7, complete sequence
          Length = 223763

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 352    gctctccaccttcaccagcaagtgt 376
              |||||| ||||||||||||||||||
Sbjct: 197849 gctctctaccttcaccagcaagtgt 197873
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>ref|NM_101029.1| Arabidopsis thaliana oligosaccharide transporter AT1G11560 mRNA,
           complete cds
          Length = 1032

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 260 ccagtcttccagttatccaggtaaaccaccttcctgactgccca 303
           ||||||||||| ||||||| |||||| || ||||| || |||||
Sbjct: 989 ccagtcttccaattatccaagtaaacaactttcctcacagccca 946
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>ref|XM_655563.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3051.2), mRNA
          Length = 2367

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 41   ataaaatgactcggttctct 60
            ||||||||||||||||||||
Sbjct: 1584 ataaaatgactcggttctct 1565
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>gb|AC125331.4| Mus musculus chromosome 7 clone RP23-11L1, complete sequence
          Length = 255921

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    ccaccttcctgactgcccac 304
              ||||||||||||||||||||
Sbjct: 121813 ccaccttcctgactgcccac 121832
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>gb|AC122245.5| Mus musculus BAC clone RP23-151P21 from 18, complete sequence
          Length = 191988

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 173    cctctgcaacaaaggaaaga 192
              ||||||||||||||||||||
Sbjct: 146179 cctctgcaacaaaggaaaga 146160
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>gb|AC122828.3| Mus musculus BAC clone RP23-215B8 from 13, complete sequence
          Length = 198604

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    tgcaacaaaggaaagaagca 196
              ||||||||||||||||||||
Sbjct: 129467 tgcaacaaaggaaagaagca 129448
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>emb|BX294025.1|NCB16M17 Neurospora crassa DNA linkage group V BAC clone B16M17
          Length = 78402

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 323   gccagcattgcaaatcgctgtgtc 346
             ||||||||||||| ||||||||||
Sbjct: 44258 gccagcattgcaagtcgctgtgtc 44281
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>gb|AC011661.5|AC011661 Genomic sequence for Arabidopsis thaliana BAC T23J18 from chromosome I,
             complete sequence
          Length = 84797

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 260   ccagtcttccagttatccaggtaaaccaccttcctgactgccca 303
             ||||||||||| ||||||| |||||| || ||||| || |||||
Sbjct: 67360 ccagtcttccaattatccaagtaaacaactttcctcacagccca 67317


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,455,014
Number of Sequences: 3902068
Number of extensions: 3455014
Number of successful extensions: 56224
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56156
Number of HSP's gapped (non-prelim): 61
length of query: 378
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 356
effective length of database: 17,147,199,772
effective search space: 6104403118832
effective search space used: 6104403118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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