ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast46e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FIP37_ARATH (Q9ZSZ8) FKBP12-interacting protein of 37 kDa (FIP-3... 29 2.4
2CLCN2_RABIT (P51789) Chloride channel protein 2 (ClC-2) (PKA-act... 29 3.2
3CLCN2_HUMAN (P51788) Chloride channel protein 2 (ClC-2) 29 3.2
4CLCN2_MOUSE (Q9R0A1) Chloride channel protein 2 (ClC-2) 29 3.2
5CLCN2_RAT (P35525) Chloride channel protein 2 (ClC-2) 29 3.2
6CLCN2_CAVPO (Q9WU45) Chloride channel protein 2 (ClC-2) 28 4.1
7ADH2_CAEEL (O45687) Probable alcohol dehydrogenase K12G11.4 (EC ... 28 5.4
8KIF14_HUMAN (Q15058) Kinesin-like protein KIF14 28 7.0
9YAP1_SCHPO (Q10098) Hypothetical protein C15F9.01c in chromosome I 27 9.2

>FIP37_ARATH (Q9ZSZ8) FKBP12-interacting protein of 37 kDa (FIP-37)|
           (Immunophilin-interacting protein AtFIP37)
          Length = 330

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 11  RNDKMLPTGSSTEKR*NLHYIQNLKGTSPTKTER 112
           +N+  +P G S E R  + YIQNLK +  +  E+
Sbjct: 90  QNESFVPAGKSPEPRFLIDYIQNLKSSEKSLKEQ 123



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>CLCN2_RABIT (P51789) Chloride channel protein 2 (ClC-2) (PKA-activated chloride|
           channel)
          Length = 898

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 210 YITLPVWRRGVMNTACPLTSLQNYGFTFGQEAPFCKVEKLCCLMIS 347
           Y+TL  +   V+   C L S    G   G+E PF  +  +C  ++S
Sbjct: 182 YLTLKTFVAKVIGLTCALGS----GMPLGKEGPFVHIASMCAALLS 223



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>CLCN2_HUMAN (P51788) Chloride channel protein 2 (ClC-2)|
          Length = 898

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 210 YITLPVWRRGVMNTACPLTSLQNYGFTFGQEAPFCKVEKLCCLMIS 347
           Y+TL  +   V+   C L S    G   G+E PF  +  +C  ++S
Sbjct: 179 YLTLKTFIAKVIGLTCALGS----GMPLGKEGPFVHIASMCAALLS 220



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>CLCN2_MOUSE (Q9R0A1) Chloride channel protein 2 (ClC-2)|
          Length = 908

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 210 YITLPVWRRGVMNTACPLTSLQNYGFTFGQEAPFCKVEKLCCLMIS 347
           Y+TL  +   V+   C L S    G   G+E PF  +  +C  ++S
Sbjct: 187 YLTLKTFVAKVIGLTCALGS----GMPLGKEGPFVHIASMCAALLS 228



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>CLCN2_RAT (P35525) Chloride channel protein 2 (ClC-2)|
          Length = 907

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 210 YITLPVWRRGVMNTACPLTSLQNYGFTFGQEAPFCKVEKLCCLMIS 347
           Y+TL  +   V+   C L S    G   G+E PF  +  +C  ++S
Sbjct: 185 YLTLKTFVAKVIGLTCALGS----GMPLGKEGPFVHIASMCAALLS 226



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>CLCN2_CAVPO (Q9WU45) Chloride channel protein 2 (ClC-2)|
          Length = 902

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 210 YITLPVWRRGVMNTACPLTSLQNYGFTFGQEAPFCKVEKLCCLMIS 347
           Y+TL  +   V+   C L S    G   G+E PF  +  +C  ++S
Sbjct: 181 YLTLKTFVAKVIGLTCALGS----GMPLGKEGPFVHIASMCASLLS 222



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>ADH2_CAEEL (O45687) Probable alcohol dehydrogenase K12G11.4 (EC 1.1.1.1)|
          Length = 351

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 110 RKKGKLVFVWLPKFSTIYL--LSTICRTL 190
           RK+G +VFV LPK  TI L  LS IC  +
Sbjct: 263 RKRGTVVFVGLPKDGTIPLDTLSLICNEI 291



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>KIF14_HUMAN (Q15058) Kinesin-like protein KIF14|
          Length = 1648

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 312  CKVEKLCCLMISWLDDPVSCTNL 380
            C  E+L  LM  WL D + CTN+
Sbjct: 1312 CAFEQLVVLMKHWLSDLLPCTNI 1334



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>YAP1_SCHPO (Q10098) Hypothetical protein C15F9.01c in chromosome I|
          Length = 227

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 146 KFSTIYLLSTICRTLGSCSLHVHHSPSMEKR 238
           K+  + L S   R LG CS+   H P ++K+
Sbjct: 139 KYKVLCLFSIWRRKLGKCSIFTVHDPDIQKK 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,061,720
Number of Sequences: 219361
Number of extensions: 1182200
Number of successful extensions: 2882
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2882
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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