| Clone Name | rbast46e11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT571256.7| Mouse DNA sequence from clone RP24-135B13 on chromosome 13, complete sequence Length = 183340 Score = 42.1 bits (21), Expect = 0.60 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 taaaaatacagaaaagaaata 119 ||||||||||||||||||||| Sbjct: 170520 taaaaatacagaaaagaaata 170540
>gb|AE001387.1| Plasmodium falciparum 3D7 chromosome 2 section 24 of 73 of the complete sequence Length = 15540 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 aaaatacagaaaagaaatac 120 |||||||||||||||||||| Sbjct: 540 aaaatacagaaaagaaatac 521
>gb|AC117570.11| Mus musculus chromosome 9, clone RP23-18M12, complete sequence Length = 238598 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 attttcttcccagtcttttg 77 |||||||||||||||||||| Sbjct: 182688 attttcttcccagtcttttg 182707
>gb|AC008558.7|AC008558 Homo sapiens chromosome 5 clone CTC-531G16, complete sequence Length = 210532 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 tgccattttcttcccagtct 73 |||||||||||||||||||| Sbjct: 117297 tgccattttcttcccagtct 117316
>gb|AC112907.7| Homo sapiens 3 BAC RP11-573D15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 132875 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gtaaaaatacagaaaagaaa 117 |||||||||||||||||||| Sbjct: 28394 gtaaaaatacagaaaagaaa 28413
>gb|AC155166.4| Mus musculus BAC clone RP24-69M8 from chromosome 8, complete sequence Length = 212711 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 aaaaatacagaaaagaaat 118 ||||||||||||||||||| Sbjct: 116304 aaaaatacagaaaagaaat 116322
>gb|AC120366.9| Mus musculus chromosome 1, clone RP24-294P1, complete sequence Length = 156784 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 aaaaatacagaaaagaaat 118 ||||||||||||||||||| Sbjct: 51624 aaaaatacagaaaagaaat 51642
>gb|AC008139.9| Drosophila melanogaster clone BACR28B01, complete sequence Length = 170675 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 99 taaaaatacagaaaagaaa 117 ||||||||||||||||||| Sbjct: 146495 taaaaatacagaaaagaaa 146513
>gb|CP000114.1| Streptococcus agalactiae A909, complete genome Length = 2127839 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 99 taaaaatacagaaaagaaa 117 ||||||||||||||||||| Sbjct: 974137 taaaaatacagaaaagaaa 974155
>gb|AC161257.2| Mus musculus BAC clone RP24-91A16 from chromosome 9, complete sequence Length = 245088 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 96 cggtaaaaatacagaaaag 114 ||||||||||||||||||| Sbjct: 108424 cggtaaaaatacagaaaag 108442
>emb|Z75548.1|CER90 Caenorhabditis elegans Cosmid R90, complete sequence Length = 25360 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 cttttgaggccggtaaaat 90 ||||||||||||||||||| Sbjct: 2934 cttttgaggccggtaaaat 2952
>ref|XM_725986.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03112) partial mRNA Length = 3639 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 99 taaaaatacagaaaagaaa 117 ||||||||||||||||||| Sbjct: 2577 taaaaatacagaaaagaaa 2595
>gb|AC112342.14| Rattus norvegicus 14 BAC CH230-253H12 (Children's Hospital Oakland Research Institute) complete sequence Length = 150292 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 ttcttcccagtcttttgag 79 ||||||||||||||||||| Sbjct: 20385 ttcttcccagtcttttgag 20367
>emb|AL672292.9| Human DNA sequence from clone XXyac-39EC11 on chromosome 6 Contains three CpG islands, complete sequence Length = 129361 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 aaaaatacagaaaagaaat 118 ||||||||||||||||||| Sbjct: 115122 aaaaatacagaaaagaaat 115140
>emb|AL356285.9| Human DNA sequence from clone RP11-569O4 on chromosome 13 Contains the 5' end of the XPO4 gene for likely ortholog of mouse exportin 4, a CCR4-NOT transcription complex, subunit 4 (CNOT4) (NOT4, NOT4H, CLONE243) pseudogene, a heterogeneous nuclear ribonucleoprotein A1 (HNRPA1)(HNRNPA1) pseudogene, a pseudogene similar to part of peptidylprolyl isomerase A (cyclophilin A) (PPIA), a Laminin receptor 1 (67kD, ribosomal protein SA)(LAMR1)(LRP, p40, RPSA, 37LRP, LAMBR) pseudogene, the 3' end of the LATS2 gene for LATS, large tumor suppressor, homolog 2 (LATS (large tumor suppressor, Drosophila) homolog 2), two novel genes and three CpG islands, complete sequence Length = 183597 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 101 aaaatacagaaaagaaata 119 ||||||||||||||||||| Sbjct: 93032 aaaatacagaaaagaaata 93050
>emb|AL353731.15| Human DNA sequence from clone RP11-345K20 on chromosome 10 Contains the 5' end of the ANXA7 gene for annexin A7, a ribosomal protein L26 (RPL26) pseudogene, a novel gene (FLJ39565), the 3' end of the PPP3CB gene for protein phosphatase 3 (formerly 2B) catalytic subunit beta isoform (calcineurin A beta) and a CpG island, complete sequence Length = 76685 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 97 ggtaaaaatacagaaaagaaata 119 ||||||||||||||||| ||||| Sbjct: 62343 ggtaaaaatacagaaaataaata 62365
>emb|AL161447.20| Human DNA sequence from clone RP11-379P1 on chromosome 9 Contains the 3' end of a novel gene (FLJ21613) similar to rat corneal wound healing related protein (includes FLJ22634), the GOLPH2 gene for golgi phosphoprotein 2 (GP73), a novel pseudogene and a CpG island, complete sequence Length = 160115 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 99 taaaaatacagaaaagaaa 117 ||||||||||||||||||| Sbjct: 153226 taaaaatacagaaaagaaa 153244
>gb|AE014232.1| Streptococcus agalactiae 2603V/R section 42 of 100 of the complete genome Length = 24935 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 99 taaaaatacagaaaagaaa 117 ||||||||||||||||||| Sbjct: 12711 taaaaatacagaaaagaaa 12729
>emb|AL766847.1|SAG766847 Streptococcus agalactiae NEM316 complete genome, segment 5 Length = 167050 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 99 taaaaatacagaaaagaaa 117 ||||||||||||||||||| Sbjct: 154646 taaaaatacagaaaagaaa 154664
>emb|CR848057.6| Zebrafish DNA sequence from clone DKEYP-84H9 in linkage group 16, complete sequence Length = 184783 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 100 aaaaatacagaaaagaaatacta 122 |||||||||||||| |||||||| Sbjct: 145812 aaaaatacagaaaataaatacta 145790
>emb|AL935187.13| Zebrafish DNA sequence from clone DKEY-97C7 in linkage group 4 Contains part of the gene for a novel protein similar to vertebrate atrophin-1 interacting protein (AIP1) and a CpG island, complete sequence Length = 263517 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 51 tcctgccattttcttccca 69 ||||||||||||||||||| Sbjct: 96083 tcctgccattttcttccca 96065
>gb|AC104796.4| Homo sapiens BAC clone RP11-318E19 from 4, complete sequence Length = 169106 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 ttttcttcccagtcttttg 77 ||||||||||||||||||| Sbjct: 145008 ttttcttcccagtcttttg 144990
>gb|AC087558.13| Mus musculus strain C57BL/6J chromosome 2 clone rp23-282p18, complete sequence Length = 217766 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 aaaaatacagaaaagaaat 118 ||||||||||||||||||| Sbjct: 144089 aaaaatacagaaaagaaat 144107
>gb|AC026130.15| Homo sapiens chromosome 17, clone RP11-801J18, complete sequence Length = 182909 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 99 taaaaatacagaaaagaaa 117 ||||||||||||||||||| Sbjct: 114552 taaaaatacagaaaagaaa 114534
>gb|AC025089.9| Homo sapiens chromosome 8, clone RP11-275B19, complete sequence Length = 165870 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 99 taaaaatacagaaaagaaa 117 ||||||||||||||||||| Sbjct: 130358 taaaaatacagaaaagaaa 130340
>gb|AC100799.2| Homo sapiens chromosome 8, clone RP11-1082F24, complete sequence Length = 194149 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 99 taaaaatacagaaaagaaa 117 ||||||||||||||||||| Sbjct: 19650 taaaaatacagaaaagaaa 19632
>gb|AC008125.9| Homo sapiens 12 BAC RPCI11-25E2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 189286 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 99 taaaaatacagaaaagaaa 117 ||||||||||||||||||| Sbjct: 147996 taaaaatacagaaaagaaa 148014
>gb|AC068620.5| Homo sapiens BAC clone RP11-646I6 from 4, complete sequence Length = 147534 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 99 taaaaatacagaaaagaaa 117 ||||||||||||||||||| Sbjct: 28530 taaaaatacagaaaagaaa 28548
>gb|AC008357.8| Drosophila melanogaster, chromosome 3R, region 86A-86A, BAC clone BACR03L12, complete sequence Length = 190672 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 99 taaaaatacagaaaagaaa 117 ||||||||||||||||||| Sbjct: 9695 taaaaatacagaaaagaaa 9713
>gb|AC127346.4| Mus musculus BAC clone RP23-54F4 from chromosome 6, complete sequence Length = 203187 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 101 aaaatacagaaaagaaata 119 ||||||||||||||||||| Sbjct: 51631 aaaatacagaaaagaaata 51613
>emb|BX855592.19| Zebrafish DNA sequence from clone CH211-232K3, complete sequence Length = 159646 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 99 taaaaatacagaaaagaaa 117 ||||||||||||||||||| Sbjct: 60826 taaaaatacagaaaagaaa 60808
>gb|AC009497.3| Homo sapiens BAC clone RP11-502N7 from 2, complete sequence Length = 183105 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 99 taaaaatacagaaaagaaa 117 ||||||||||||||||||| Sbjct: 4242 taaaaatacagaaaagaaa 4224
>gb|AC104653.5| Homo sapiens BAC clone RP11-295D2 from 2, complete sequence Length = 55965 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 99 taaaaatacagaaaagaaa 117 ||||||||||||||||||| Sbjct: 34608 taaaaatacagaaaagaaa 34590
>ref|XM_221028.3| PREDICTED: Rattus norvegicus similar to KIAA1636 protein (predicted) (LOC303599), mRNA Length = 6882 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 ttttcttcccagtcttttg 77 ||||||||||||||||||| Sbjct: 3194 ttttcttcccagtcttttg 3176
>gb|AC007536.10| Homo sapiens 12 BAC RP11-277E18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 71819 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 ggacagactcctgccattt 61 ||||||||||||||||||| Sbjct: 54174 ggacagactcctgccattt 54156
>emb|BX005008.12| Zebrafish DNA sequence from clone DKEY-29K15 in linkage group 14, complete sequence Length = 208014 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 135 tgcgtgtccctttttaccc 153 ||||||||||||||||||| Sbjct: 191162 tgcgtgtccctttttaccc 191144
>emb|AL845427.11| Mouse DNA sequence from clone RP23-436J19 on chromosome 2, complete sequence Length = 168207 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 aaaaatacagaaaagaaat 118 ||||||||||||||||||| Sbjct: 114456 aaaaatacagaaaagaaat 114474
>emb|BX296520.9| Zebrafish DNA sequence from clone RP71-4M17 in linkage group 20, complete sequence Length = 135280 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 99 taaaaatacagaaaagaaatact 121 ||||||||||||||| ||||||| Sbjct: 56404 taaaaatacagaaaaaaaatact 56382
>gb|AE003686.4| Drosophila melanogaster chromosome 3R, section 24 of 118 of the complete sequence Length = 223505 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 99 taaaaatacagaaaagaaa 117 ||||||||||||||||||| Sbjct: 114031 taaaaatacagaaaagaaa 114049
>emb|AL355076.5|CNS05TCA Human chromosome 14 DNA sequence BAC C-2509G16 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 215936 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 58 attttcttcccagtctttt 76 ||||||||||||||||||| Sbjct: 79391 attttcttcccagtctttt 79409
>gb|AC133497.4| Mus musculus BAC clone RP24-390A22 from 8, complete sequence Length = 158740 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 aaaaatacagaaaagaaat 118 ||||||||||||||||||| Sbjct: 157091 aaaaatacagaaaagaaat 157109
>gb|AC163446.2| Mus musculus chromosome 5, clone RP23-151G22, complete sequence Length = 190466 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 51 tcctgccattttcttccca 69 ||||||||||||||||||| Sbjct: 41472 tcctgccattttcttccca 41454 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,734,698 Number of Sequences: 3902068 Number of extensions: 1734698 Number of successful extensions: 140598 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 140489 Number of HSP's gapped (non-prelim): 109 length of query: 189 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 167 effective length of database: 17,147,199,772 effective search space: 2863582361924 effective search space used: 2863582361924 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)