>YERA_BACSU (O34909) Putative adenine deaminase yerA (EC 3.5.4.2) (Adenase)|
           (Adenine aminase)
          Length = 580

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -2

Query: 283 DGHLGVVSSDRYVSC--LSHPLVPTPFRVSKKTRLLF*KGCHHCVYSLLLCHYSFVVPAS 110
           D +LGVV   R  S   L  PL P P  V  K  +L   GC    ++    H   +VP  
Sbjct: 327 DDYLGVVGPGRLASLNILEDPLNPNPVTVLSKGTILRENGCDLKAFTKTDWHKGGLVPL- 385

Query: 109 GQIDFYLSCDDV 74
            ++ + ++ DD+
Sbjct: 386 -ELSYDMTMDDL 396

>NUP88_MOUSE (Q8CEC0) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein)
          Length = 753

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 165 WQPF*NNSLVFLETLNGVGTRGWDRHDTYRSDETTPRCPSVPGHLVLR 308
           WQ +  N +VFL    GV  +     +   +  T+P CPS+P HL  R
Sbjct: 14  WQSWLPNHVVFLRLREGVRNQSPAEAEKPAAS-TSPSCPSLPPHLPTR 60

>IGHE_HUMAN (P01854) Ig epsilon chain C region|
          Length = 428

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
 Frame = +3

Query: 102 ICPDAGTTKL*WHRSK-----EYTQ*WQPF*NNSLVFLETLNGVGTRGWDRHDTYRSDET 266
           + P  GT  L W R+        T+  +   N +L    TL  VGTR W   +TY+   T
Sbjct: 244 LAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLP-VGTRDWIEGETYQCRVT 302

Query: 267 TPRCP 281
            P  P
Sbjct: 303 HPHLP 307

>HME1_HUMAN (Q05925) Homeobox protein engrailed-1 (Hu-En-1)|
          Length = 392

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/42 (40%), Positives = 18/42 (42%)
 Frame = +3

Query: 270 PRCPSVPGHLVLRARPLQGHPQLGEHRPCPPASSLIQPERRP 395
           P  PS P    L   PL  HP L  H P PP   L  P  +P
Sbjct: 54  PAPPSPPAAPCLP--PLAHHPHLPPHPPPPPPQHLAAPAHQP 93

>TRFE_PAROL (O93429) Serotransferrin precursor|
          Length = 685

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +2

Query: 29  DKTLICSLQPNDSVRDIIT**IKINLSRRRHHKAVVAQKQRVHTMMATFLKQQSSLFGNS 208
           D  LIC  +   SV + ++     NL++   H  V   +  + T + TFL  Q S FGNS
Sbjct: 561 DYELICPSKGPVSVENFMS----CNLAKVNAHAVVT--RPEIRTKVVTFLNNQQSHFGNS 614

>NUP88_RAT (O08658) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein) (Nucleoporin Nup84)
          Length = 742

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 165 WQPF*NNSLVFLETLNGVGTRGWDRHDTYRSDETTPRCPSVPGHLVLR 308
           WQ +  N +VFL    G+  +     D   +  T+P CP +P HL  R
Sbjct: 14  WQSWLPNHVVFLRLREGLKNQSPAEADK-PATSTSPSCPPLPPHLPTR 60

>SRPK1_HUMAN (Q96SB4) Serine/threonine-protein kinase SRPK1 (EC 2.7.11.1)|
           (Serine/arginine-rich protein-specific kinase 1)
           (SR-protein-specific kinase 1) (SFRS protein kinase 1)
          Length = 826

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/39 (43%), Positives = 18/39 (46%)
 Frame = +3

Query: 279 PSVPGHLVLRARPLQGHPQLGEHRPCPPASSLIQPERRP 395
           P  P        PLQG P LG  R  PPA  L +PE  P
Sbjct: 75  PLFPARPARALGPLQG-PALGGRRRPPPARPLTRPETPP 112

>POL_HTLV2 (P03363) Pol polyprotein [Contains: Reverse|
           transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
           (RT); Integrase (IN)]
          Length = 982

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 258 LIDTCHVCPTPLSQHH 211
           L+ TCH C T  SQHH
Sbjct: 716 LVQTCHTCQTINSQHH 731

>SYNPO_MOUSE (Q8CC35) Synaptopodin|
          Length = 929

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
 Frame = +3

Query: 288 PGHLVLRARPLQGHPQLGEHRPCPPASSLI----QPER 389
           PG   +   P+ G  Q GE    PPASS+     QP+R
Sbjct: 480 PGTSQIEQSPMMGRRQFGEKAWAPPASSMADRSPQPQR 517

>POLG_BOVEV (P12915) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2174

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 61   RFCPRHHHMIDKNQSVQTQAPQSCSGTEAKSTHNDGNLSKTTV*SFWK 204
            + C  HH  +DK+  V    P  CSGT   ++  +  + +T V + +K
Sbjct: 1980 QLCCSHHLYMDKHYYVVGGMPSGCSGTSIFNSMINNLIIRTLVLTVYK 2027

>GR93C_DROME (Q9VD74) Putative gustatory receptor 93c|
          Length = 397

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
 Frame = -3

Query: 267 SSRLIDTCHVCP--TPLSQHHSEFPKRLDCCFRKVAIIVCTLCFCATTALWCLRLDRLIF 94
           S RLI    VC    P      +  +RL  CFR  A ++C +C       +   L R+I 
Sbjct: 58  SCRLISVTAVCCFCAPYVADIEDPYERLLQCFRLSASLICGICIIVVQVCYEKELLRMII 117

Query: 93  IYHVMMSRTESFGWSEHINVLS*KCWYLLVF 1
            +  +  R       + I     + ++LL+F
Sbjct: 118 SFLRLFRRVRRLSSLKRIGFGGKREFFLLLF 148

>RBF1_CANAL (Q00312) Transcription factor RBF1 (RPG-box-binding factor)|
           (Repressor-activator protein 1)
          Length = 527

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 70  PRHHHMIDKNQSVQTQAPQSCSGTEAKSTHN 162
           P HHH++ + Q  Q Q  Q     + +  HN
Sbjct: 325 PHHHHLLQQEQQQQQQQQQQQQQQQQQQQHN 355

>CXA3_SHEEP (Q9TU17) Gap junction alpha-3 protein (Connexin-44) (Cx44)|
          Length = 412

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 228 GWDRHDTYRSDETTPRCPSVPGHLVLRARPLQGHPQLGEHRPCPPASSL 374
           GW +    +   T+P  P  PG     A+P+ G P L      PPA ++
Sbjct: 222 GWKK---LKQGMTSPFRPDTPGSRAGSAKPMGGSPLLLPPNSAPPAVTI 267

>ALDO3_ARATH (Q7G9P4) Abscisic-aldehyde oxidase (EC 1.2.3.14) (Aldehyde oxidase|
           3) (AtAO-3) (AtAO4)
          Length = 1332

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -3

Query: 246 CHVCPTPLSQHHSEFPKRLDCCFRKVAIIVCTLCFCATT 130
           C  C   LS++  E  +  +CC      ++C++  C+ T
Sbjct: 45  CGACLVVLSKYDPELDQVKECCINSCLTLLCSVNGCSIT 83

>UPPS_ARCFU (O29049) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 251

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
 Frame = +2

Query: 119 HHKAVVAQKQRVHTMMATFLKQQSSLFGNS------EWCWDKGV 232
           HH A++    R           +   FG+       EWCWD GV
Sbjct: 22  HHIAIIMDGNRRFARKKGLEPHEGHFFGSKKAEEVLEWCWDLGV 65


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,332,111
Number of Sequences: 219361
Number of extensions: 1197087
Number of successful extensions: 3370
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3370
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)