ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast46b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LIPP_PIG (P00591) Pancreatic triacylglycerol lipase (EC 3.1.1.3)... 28 4.5
2SSB_BRAJA (Q89L50) Single-stranded DNA-binding protein (SSB) (He... 27 9.9
3STAB2_MOUSE (Q8R4U0) Stabilin-2 precursor [Contains: Short form ... 27 9.9

>LIPP_PIG (P00591) Pancreatic triacylglycerol lipase (EC 3.1.1.3) (Pancreatic|
           lipase) (PL)
          Length = 450

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 44  DPLQPTRSEIRMGRKRRRILHGF 112
           DP   T S  RM RK R I+HGF
Sbjct: 56  DPSTITNSNFRMDRKTRFIIHGF 78



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>SSB_BRAJA (Q89L50) Single-stranded DNA-binding protein (SSB)|
           (Helix-destabilizing protein)
          Length = 164

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 34  VTERSITTYQV-RDKNGEEEKENTTWLFYRDERHRFIVFS 150
           +   SI T +  RDKN  E KE T W       HR ++F+
Sbjct: 29  IANLSIATSETWRDKNSGERKEKTEW-------HRVVIFN 61



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>STAB2_MOUSE (Q8R4U0) Stabilin-2 precursor [Contains: Short form stabilin-2]|
          Length = 2559

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 57  GCNGSLCDRSWTGNGVNCL 1
           G    +C R WTGNG +C+
Sbjct: 899 GTYSCVCQRGWTGNGRDCV 917


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,903,516
Number of Sequences: 219361
Number of extensions: 522327
Number of successful extensions: 1205
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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