ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast46a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|CR626878.14| Zebrafish DNA sequence from clone DKEY-196H17 i... 46 0.092
2emb|AL023586.1|HS426F10 Human DNA sequence from clone RP3-426F10... 44 0.37
3emb|AL670999.4| Mouse DNA sequence from clone RP23-168F16 on chr... 44 0.37
4emb|CR352264.6| Mouse DNA sequence from clone RP23-344N9 on chro... 44 0.37
5emb|BX470212.6| Zebrafish DNA sequence from clone CH211-229H7 in... 44 0.37
6gb|AC005399.21| Homo sapiens chromosome 22 clone p238m15 map 22q... 44 0.37
7gb|AC004019.20| Homo sapiens Chromosome 22q11.2 BAC Clone 357f7 ... 44 0.37
8emb|CR769783.10| Zebrafish DNA sequence from clone DKEY-40A23 in... 42 1.4
9emb|AL451010.4| Human DNA sequence from clone RP11-163M2 on chro... 42 1.4
10emb|AL161442.22| Human DNA sequence from clone RP6-102F8 on chro... 42 1.4
11gb|AC105339.9| Homo sapiens chromosome 15, clone RP11-752G15, co... 42 1.4
12emb|AL732484.13| Mouse DNA sequence from clone RP23-37B7 on chro... 42 1.4
13emb|AL606993.2|OSJN00121 Oryza sativa genomic DNA, chromosome 4,... 42 1.4
14dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticu... 42 1.4
15dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
16dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
17gb|AC096883.2| Sus scrofa clone RP44-276G17, complete sequence 42 1.4
18emb|CR762427.15| Zebrafish DNA sequence from clone DKEY-253I9 in... 42 1.4
19gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
20emb|AL731759.2|CNS07YPA Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.4
21gb|AC159227.3| Mus musculus BAC clone RP24-334D12 from chromosom... 40 5.7
22gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
23gb|AC147377.4| Mus musculus BAC clone RP23-156K23 from chromosom... 40 5.7
24gb|AC147260.3| Mus musculus BAC clone RP24-186L11 from chromosom... 40 5.7
25gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
26gb|AC113022.7| Mus musculus chromosome 5, clone RP23-187D22, com... 40 5.7
27gb|AC107798.10| Mus musculus chromosome 8, clone RP23-4D24, comp... 40 5.7
28gb|AC122321.4| Mus musculus BAC clone RP23-319I22 from chromosom... 40 5.7
29emb|BX571802.15| Zebrafish DNA sequence from clone CH211-197A16 ... 40 5.7
30emb|CT005235.2| Pan troglodytes chromosome X clone RP43-015P08 m... 40 5.7
31gb|AC122901.4| Mus musculus BAC clone RP23-40D21 from chromosome... 40 5.7
32gb|AC099511.5| Homo sapiens chromosome 16 clone RP11-293N14, com... 40 5.7
33gb|AC118928.13| Mus musculus chromosome 16, clone RP23-416J10, c... 40 5.7
34ref|XM_724626.1| Plasmodium yoelii yoelii str. 17XNL erythrocyte... 40 5.7
35ref|XM_727584.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.7
36gb|AC091766.2| Homo sapiens BAC clone RP11-393L14 from 7, comple... 40 5.7
37gb|AC004142.2| Homo sapiens BAC clone CTB-118D7 from 7, complete... 40 5.7
38ref|XM_668275.1| Plasmodium berghei strain ANKA hypothetical pro... 40 5.7
39gb|AC118695.10| Mus musculus chromosome 19, clone RP24-62C10, co... 40 5.7
40gb|AC019028.13| Mus musculus chromosome 5, clone RP23-88A22, com... 40 5.7
41gb|AC138101.8| Mus musculus chromosome 5, clone RP23-149H20, com... 40 5.7
42gb|AC110255.10| Mus musculus, clone RP23-274K7, complete sequence 40 5.7
43emb|AL391423.16| Human DNA sequence from clone RP13-43J18 on chr... 40 5.7
44emb|AL353641.9| Human DNA sequence from clone RP11-142P12 on chr... 40 5.7
45emb|AL137248.21| Human DNA sequence from clone RP11-316G23 on ch... 40 5.7
46emb|AL135783.6| Human DNA sequence from clone RP3-527F8 on chrom... 40 5.7
47emb|BX890581.13| Zebrafish DNA sequence from clone CH211-222O19 ... 40 5.7
48emb|AL132977.1|ATT10K17 Arabidopsis thaliana DNA chromosome 3, B... 40 5.7
49emb|BX537132.8| Zebrafish DNA sequence from clone RP71-8L21 in l... 40 5.7
50emb|BX538251.1|HSM806492 Homo sapiens genomic DNA; cDNA DKFZp686... 40 5.7
51emb|AL162043.1|HSM802562 Homo sapiens genomic DNA; cDNA DKFZp761... 40 5.7
52emb|BX294387.11| Zebrafish DNA sequence from clone DKEY-267L16 i... 40 5.7
53emb|CR847867.6| Human DNA sequence from clone WI2-1744J18 on chr... 40 5.7
54gb|AC142261.5| Mus musculus BAC clone RP24-469C3 from chromosome... 40 5.7
55emb|BX323037.10| Zebrafish DNA sequence from clone DKEYP-8B6 in ... 40 5.7
56gb|AC106712.5| Homo sapiens 3 BAC RP11-221J22 (Roswell Park Canc... 40 5.7
57gb|DP000057.1| Dasypus novemcinctus target 117 genomic scaffold 40 5.7
58gb|AC099054.2| Homo sapiens chromosome 3 clone RP11-489C3, compl... 40 5.7
59gb|AC019205.4| Homo sapiens BAC clone RP11-398K22 from 6, comple... 40 5.7
60dbj|AK163870.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 40 5.7
61gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 40 5.7
62emb|BX004763.9| Zebrafish DNA sequence from clone CH211-131K2, c... 40 5.7
63gb|AC020741.4|AC020741 Homo sapiens BAC clone RP11-798L4 from 4,... 40 5.7
64dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
65gb|AC092379.4| Homo sapiens chromosome 16 clone RP11-707E24, com... 40 5.7
66gb|AC010890.9| Homo sapiens BAC clone RP11-449L24 from 2, comple... 40 5.7
67gb|AC068675.17| Homo sapiens chromosome 17, clone RP11-392O1, co... 40 5.7
68gb|AC164661.3| Pan troglodytes BAC clone CH251-11F8 from chromos... 40 5.7
69emb|AL929193.19| Zebrafish DNA sequence from clone CH211-274P24 ... 40 5.7
70emb|BX897716.9| Zebrafish DNA sequence from clone DKEY-177F24 in... 40 5.7
71emb|BX545847.9| Zebrafish DNA sequence from clone RP71-14M1 in l... 40 5.7
72dbj|AK115512.1| Ciona intestinalis cDNA, clone:cieg057b06, full ... 40 5.7
73gb|AC173707.2| Mus musculus BAC clone RP23-296A12 from chromosom... 40 5.7
74emb|BX248089.5| Zebrafish DNA sequence from clone DKEY-21K10 in ... 40 5.7
75emb|AL805955.26| Mouse DNA sequence from clone RP23-192A6 on chr... 40 5.7
76gb|AC151475.1| Mus musculus BAC clone RP23-283P1 from 5, complet... 40 5.7 
>emb|CR626878.14| Zebrafish DNA sequence from clone DKEY-196H17 in linkage group 13,
             complete sequence
          Length = 201749

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 8     tacatgctttattcatattatta 30
             |||||||||||||||||||||||
Sbjct: 54739 tacatgctttattcatattatta 54761
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>emb|AL023586.1|HS426F10 Human DNA sequence from clone RP3-426F10 on chromosome 1p36.21-36.33
             Contains 3' end of the gene for the transmembrane protein
             SHREW1, complete sequence
          Length = 91640

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 89    gaaaaattatccccaaaataat 110
             ||||||||||||||||||||||
Sbjct: 31409 gaaaaattatccccaaaataat 31388
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>emb|AL670999.4| Mouse DNA sequence from clone RP23-168F16 on chromosome 4 Contains the
              (pseudo)gene for a novel protein similar to high-mobility
              group box 1 (Hmgb1), complete sequence
          Length = 226259

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 63     ggaacaaaggaacaaaagaaacaagg 88
              ||||||||||||||||||||| ||||
Sbjct: 192140 ggaacaaaggaacaaaagaaaaaagg 192165
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>emb|CR352264.6| Mouse DNA sequence from clone RP23-344N9 on chromosome 4 Contains a high
              mobility group box 1 (Hmgb1) pseudogene, complete sequence
          Length = 185595

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 63     ggaacaaaggaacaaaagaaacaagg 88
              ||||||||||||||||||||| ||||
Sbjct: 151472 ggaacaaaggaacaaaagaaaaaagg 151497
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>emb|BX470212.6| Zebrafish DNA sequence from clone CH211-229H7 in linkage group 14,
             complete sequence
          Length = 94121

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 57    aactaaggaacaaaggaacaaaagaaacaagggaaaaa 94
             |||||| ||| |||||||||||||||| |||| |||||
Sbjct: 15518 aactaatgaaaaaaggaacaaaagaaagaaggaaaaaa 15481
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>gb|AC005399.21| Homo sapiens chromosome 22 clone p238m15 map 22q11, complete sequence
          Length = 151834

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 16     ttattcatattattattcccca 37
              ||||||||||||||||||||||
Sbjct: 149777 ttattcatattattattcccca 149798
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>gb|AC004019.20| Homo sapiens Chromosome 22q11.2 BAC Clone 357f7 In CES Region, complete
             sequence
          Length = 260409

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 16    ttattcatattattattcccca 37
             ||||||||||||||||||||||
Sbjct: 20116 ttattcatattattattcccca 20137
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>emb|CR769783.10| Zebrafish DNA sequence from clone DKEY-40A23 in linkage group 1,
             complete sequence
          Length = 222035

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 13    gctttattcatattattattcccca 37
             |||||||||||||||||||| ||||
Sbjct: 68639 gctttattcatattattatttccca 68663
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>emb|AL451010.4| Human DNA sequence from clone RP11-163M2 on chromosome 1 Contains a
             novel gene, a pseudogene similar to part of actin, beta
             (ACTB), the GLMN gene for glomulin, FKBP associated
             protein and a novel gene (FLJ13150), complete sequence
          Length = 184144

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 61    aaggaacaaaggaacaaaaga 81
             |||||||||||||||||||||
Sbjct: 19124 aaggaacaaaggaacaaaaga 19104
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>emb|AL161442.22| Human DNA sequence from clone RP6-102F8 on chromosome Xq25-26.3
             Contains the 5' end of variants of the MBNL3 gene for
             muscleblind-like 3 (Drosophila) and a CpG island, complete
             sequence
          Length = 112453

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 70    aggaacaaaagaaacaagggaaaaattat 98
             ||||| ||||||||||||| |||||||||
Sbjct: 96424 aggaaaaaaagaaacaaggcaaaaattat 96396
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>gb|AC105339.9| Homo sapiens chromosome 15, clone RP11-752G15, complete sequence
          Length = 175786

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 329    ctctgagaagcagcaggcaag 349
              |||||||||||||||||||||
Sbjct: 121665 ctctgagaagcagcaggcaag 121645
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>emb|AL732484.13| Mouse DNA sequence from clone RP23-37B7 on chromosome 2, complete
              sequence
          Length = 201265

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 68     aaaggaacaaaagaaacaagg 88
              |||||||||||||||||||||
Sbjct: 121665 aaaggaacaaaagaaacaagg 121645
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>emb|AL606993.2|OSJN00121 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0051N19,
             complete sequence
          Length = 49800

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 237   aaacaaaattaatcaataatc 257
             |||||||||||||||||||||
Sbjct: 28158 aaacaaaattaatcaataatc 28138
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>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete
               genome
          Length = 2516575

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 78      aagaaacaagggaaaaattat 98
               |||||||||||||||||||||
Sbjct: 2419373 aagaaacaagggaaaaattat 2419353
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 237     aaacaaaattaatcaataatc 257
               |||||||||||||||||||||
Sbjct: 5193753 aaacaaaattaatcaataatc 5193733
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 1        aatagaatacatgctttattc 21
                |||||||||||||||||||||
Sbjct: 19511035 aatagaatacatgctttattc 19511055
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>gb|AC096883.2| Sus scrofa clone RP44-276G17, complete sequence
          Length = 148088

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 60     taaggaacaaaggaacaaaag 80
              |||||||||||||||||||||
Sbjct: 102729 taaggaacaaaggaacaaaag 102709
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>emb|CR762427.15| Zebrafish DNA sequence from clone DKEY-253I9 in linkage group 1, complete
              sequence
          Length = 209003

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 13     gctttattcatattattattcccca 37
              |||||||||||||||||||| ||||
Sbjct: 168064 gctttattcatattattatttccca 168040
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 1        aatagaatacatgctttattc 21
                |||||||||||||||||||||
Sbjct: 19437248 aatagaatacatgctttattc 19437268
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>emb|AL731759.2|CNS07YPA Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 144596

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1     aatagaatacatgctttattc 21
             |||||||||||||||||||||
Sbjct: 43216 aatagaatacatgctttattc 43236
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>gb|AC159227.3| Mus musculus BAC clone RP24-334D12 from chromosome 12, complete
             sequence
          Length = 211971

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 336   aagcagcaggcaagcaaaca 355
             ||||||||||||||||||||
Sbjct: 30469 aagcagcaggcaagcaaaca 30450
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>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0079H23, complete sequence
          Length = 191765

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    aaaggaacaaaagaaacaag 87
             ||||||||||||||||||||
Sbjct: 93231 aaaggaacaaaagaaacaag 93250
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>gb|AC147377.4| Mus musculus BAC clone RP23-156K23 from chromosome 5, complete sequence
          Length = 236084

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 67     caaaggaacaaaagaaacaaggga 90
              ||||| ||||||||||||||||||
Sbjct: 209588 caaagcaacaaaagaaacaaggga 209565
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>gb|AC147260.3| Mus musculus BAC clone RP24-186L11 from chromosome Y, complete sequence
          Length = 137361

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 65    aacaaaggaacaaaagaaacaagg 88
             ||||||| ||||||||||||||||
Sbjct: 70424 aacaaagaaacaaaagaaacaagg 70447
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>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03,
              complete sequence
          Length = 177861

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 68     aaaggaacaaaagaaacaag 87
              ||||||||||||||||||||
Sbjct: 149659 aaaggaacaaaagaaacaag 149678
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>gb|AC113022.7| Mus musculus chromosome 5, clone RP23-187D22, complete sequence
          Length = 210968

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     aacaaaagaaacaagggaaa 92
              ||||||||||||||||||||
Sbjct: 124484 aacaaaagaaacaagggaaa 124465
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>gb|AC107798.10| Mus musculus chromosome 8, clone RP23-4D24, complete sequence
          Length = 234420

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 237    aaacaaaattaatcaataat 256
              ||||||||||||||||||||
Sbjct: 127190 aaacaaaattaatcaataat 127209
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>gb|AC122321.4| Mus musculus BAC clone RP23-319I22 from chromosome 12, complete sequence
          Length = 167106

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 336    aagcagcaggcaagcaaaca 355
              ||||||||||||||||||||
Sbjct: 155079 aagcagcaggcaagcaaaca 155060
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>emb|BX571802.15| Zebrafish DNA sequence from clone CH211-197A16 in linkage group 10,
             complete sequence
          Length = 196999

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 343   aggcaagcaaacatgcagaagctt 366
             |||| |||||||||||||||||||
Sbjct: 55247 aggccagcaaacatgcagaagctt 55270
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>emb|CT005235.2| Pan troglodytes chromosome X clone RP43-015P08 map Xq28, complete
              sequence
          Length = 150061

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 64     gaacaaaggaacaaaagaaa 83
              ||||||||||||||||||||
Sbjct: 145791 gaacaaaggaacaaaagaaa 145810
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>gb|AC122901.4| Mus musculus BAC clone RP23-40D21 from chromosome 10, complete sequence
          Length = 207598

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 365    ttagtctctgccaacctgtt 384
              ||||||||||||||||||||
Sbjct: 127333 ttagtctctgccaacctgtt 127352
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>gb|AC099511.5| Homo sapiens chromosome 16 clone RP11-293N14, complete sequence
          Length = 173627

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    caaacaaaattaatcaataa 255
              ||||||||||||||||||||
Sbjct: 171381 caaacaaaattaatcaataa 171400
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>gb|AC118928.13| Mus musculus chromosome 16, clone RP23-416J10, complete sequence
          Length = 238516

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    aacaaaggaacaaaagaaac 84
             ||||||||||||||||||||
Sbjct: 18890 aacaaaggaacaaaagaaac 18909
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>ref|XM_724626.1| Plasmodium yoelii yoelii str. 17XNL erythrocyte membrane protein
           (PY01890) partial mRNA
          Length = 2137

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 93  aattatccccaaaataataa 112
           ||||||||||||||||||||
Sbjct: 7   aattatccccaaaataataa 26
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>ref|XM_727584.1| Plasmodium chabaudi chabaudi hypothetical protein (PC400247.00.0)
           partial mRNA
          Length = 237

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 93  aattatccccaaaataataa 112
           ||||||||||||||||||||
Sbjct: 7   aattatccccaaaataataa 26
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>gb|AC091766.2| Homo sapiens BAC clone RP11-393L14 from 7, complete sequence
          Length = 65542

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    gaacaaaggaacaaaagaaa 83
             ||||||||||||||||||||
Sbjct: 12274 gaacaaaggaacaaaagaaa 12255
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>gb|AC004142.2| Homo sapiens BAC clone CTB-118D7 from 7, complete sequence
          Length = 166126

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 371   tctgccaacctgttgctgct 390
             ||||||||||||||||||||
Sbjct: 48226 tctgccaacctgttgctgct 48207
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>ref|XM_668275.1| Plasmodium berghei strain ANKA hypothetical protein (PB000333.02.0)
           partial mRNA
          Length = 480

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 32  tccccacaaggatgtatata 51
           ||||||||||||||||||||
Sbjct: 108 tccccacaaggatgtatata 89
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>gb|AC118695.10| Mus musculus chromosome 19, clone RP24-62C10, complete sequence
          Length = 261979

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   tctaacacctgacccaagtc 321
             ||||||||||||||||||||
Sbjct: 59514 tctaacacctgacccaagtc 59533
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>gb|AC019028.13| Mus musculus chromosome 5, clone RP23-88A22, complete sequence
          Length = 264425

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 338   gcagcaggcaagcaaacatg 357
             ||||||||||||||||||||
Sbjct: 58030 gcagcaggcaagcaaacatg 58011
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>gb|AC138101.8| Mus musculus chromosome 5, clone RP23-149H20, complete sequence
          Length = 211521

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 338    gcagcaggcaagcaaacatg 357
              ||||||||||||||||||||
Sbjct: 137490 gcagcaggcaagcaaacatg 137471
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>gb|AC110255.10| Mus musculus, clone RP23-274K7, complete sequence
          Length = 170587

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 237    aaacaaaattaatcaataat 256
              ||||||||||||||||||||
Sbjct: 149334 aaacaaaattaatcaataat 149353
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>emb|AL391423.16| Human DNA sequence from clone RP13-43J18 on chromosome 10 Contains part
             of the gene for a novel protein (FLJ32798), complete
             sequence
          Length = 114294

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    ggaacaaaggaacaaaagaa 82
             ||||||||||||||||||||
Sbjct: 89063 ggaacaaaggaacaaaagaa 89044
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>emb|AL353641.9| Human DNA sequence from clone RP11-142P12 on chromosome 9, complete
            sequence
          Length = 35009

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 94   attatccccaaaataataat 113
            ||||||||||||||||||||
Sbjct: 9773 attatccccaaaataataat 9792
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>emb|AL137248.21| Human DNA sequence from clone RP11-316G23 on chromosome 13q12.1-12.3,
             complete sequence
          Length = 186343

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    aggaacaaaggaacaaaaga 81
             ||||||||||||||||||||
Sbjct: 71122 aggaacaaaggaacaaaaga 71103
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>emb|AL135783.6| Human DNA sequence from clone RP3-527F8 on chromosome Xq25-27.1 Contains
              the TNFSF5 gene for tumor necrosis factor (ligand)
              superfamily (member 5 ,hyper-IgM syndrome), a novel gene,
              the 3' end of the ARHGEF6 gene for  Rac/Cdc42 guanine
              nucleotide exchange factor (GEF) 6 and a CpG island,
              complete sequence
          Length = 175706

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 64     gaacaaaggaacaaaagaaa 83
              ||||||||||||||||||||
Sbjct: 119047 gaacaaaggaacaaaagaaa 119066
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>emb|BX890581.13| Zebrafish DNA sequence from clone CH211-222O19 in linkage group 21,
              complete sequence
          Length = 205143

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 343    aggcaagcaaacatgcagaagctt 366
              |||| |||||||||||||||||||
Sbjct: 117028 aggccagcaaacatgcagaagctt 117051
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>emb|AL132977.1|ATT10K17 Arabidopsis thaliana DNA chromosome 3, BAC clone T10K17
          Length = 109016

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    aaaggaacaaaagaaacaag 87
             ||||||||||||||||||||
Sbjct: 69035 aaaggaacaaaagaaacaag 69016
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>emb|BX537132.8| Zebrafish DNA sequence from clone RP71-8L21 in linkage group 1,
             complete sequence
          Length = 132287

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    gctttattcatattattatt 32
             ||||||||||||||||||||
Sbjct: 73456 gctttattcatattattatt 73437
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>emb|BX538251.1|HSM806492 Homo sapiens genomic DNA; cDNA DKFZp686L2329 (from clone
            DKFZp686L2329)
          Length = 4810

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 371  tctgccaacctgttgctgct 390
            ||||||||||||||||||||
Sbjct: 2642 tctgccaacctgttgctgct 2661
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>emb|AL162043.1|HSM802562 Homo sapiens genomic DNA; cDNA DKFZp761L0312 (from clone
           DKFZp761L0312)
          Length = 2701

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 371 tctgccaacctgttgctgct 390
           ||||||||||||||||||||
Sbjct: 541 tctgccaacctgttgctgct 560
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>emb|BX294387.11| Zebrafish DNA sequence from clone DKEY-267L16 in linkage group 9,
             complete sequence
          Length = 167582

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 343   aggcaagcaaacatgcagaagctt 366
             |||| |||||||||||||||||||
Sbjct: 85506 aggccagcaaacatgcagaagctt 85483
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>emb|CR847867.6| Human DNA sequence from clone WI2-1744J18 on chromosome 1, complete
            sequence
          Length = 23685

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 84   caagggaaaaattatcccca 103
            ||||||||||||||||||||
Sbjct: 3260 caagggaaaaattatcccca 3241
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>gb|AC142261.5| Mus musculus BAC clone RP24-469C3 from chromosome unknown, complete
              sequence
          Length = 179858

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 65     aacaaaggaacaaaagaaacaagg 88
              ||||||| ||||||||||||||||
Sbjct: 173341 aacaaagaaacaaaagaaacaagg 173318
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>emb|BX323037.10| Zebrafish DNA sequence from clone DKEYP-8B6 in linkage group 24, complete
              sequence
          Length = 173818

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 343    aggcaagcaaacatgcagaagctt 366
              |||| |||||||||||||||||||
Sbjct: 163757 aggccagcaaacatgcagaagctt 163734
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>gb|AC106712.5| Homo sapiens 3 BAC RP11-221J22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 160742

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     ggaaaaattatccccaaaat 107
              ||||||||||||||||||||
Sbjct: 128627 ggaaaaattatccccaaaat 128646
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>gb|DP000057.1| Dasypus novemcinctus target 117 genomic scaffold
          Length = 444202

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     acaaaggaacaaaagaaaca 85
              ||||||||||||||||||||
Sbjct: 211958 acaaaggaacaaaagaaaca 211977
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>gb|AC099054.2| Homo sapiens chromosome 3 clone RP11-489C3, complete sequence
          Length = 201564

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    aacaagggaaaaattatccc 101
             ||||||||||||||||||||
Sbjct: 77489 aacaagggaaaaattatccc 77470
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>gb|AC019205.4| Homo sapiens BAC clone RP11-398K22 from 6, complete sequence
          Length = 198052

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 67     caaaggaacaaaagaaacaagggaaaaa 94
              |||||||||||||||| ||| |||||||
Sbjct: 123145 caaaggaacaaaagaagcaacggaaaaa 123118
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>dbj|AK163870.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130098H10 product:hypothetical protein,
            full insert sequence
          Length = 5377

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 365  ttagtctctgccaacctgtt 384
            ||||||||||||||||||||
Sbjct: 1553 ttagtctctgccaacctgtt 1534
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>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 99      ccccaaaataataatgaggg 118
               ||||||||||||||||||||
Sbjct: 1350300 ccccaaaataataatgaggg 1350281
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>emb|BX004763.9| Zebrafish DNA sequence from clone CH211-131K2, complete sequence
          Length = 86545

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 63    ggaacaaaggaacaaaagaaacaagggaaaaa 94
             |||| ||||||| ||||||||||||| |||||
Sbjct: 46949 ggaaaaaaggaaaaaaagaaacaaggaaaaaa 46918
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>gb|AC020741.4|AC020741 Homo sapiens BAC clone RP11-798L4 from 4, complete sequence
          Length = 191804

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 337    agcagcaggcaagcaaacat 356
              ||||||||||||||||||||
Sbjct: 118427 agcagcaggcaagcaaacat 118446
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 68       aaaggaacaaaagaaacaag 87
                ||||||||||||||||||||
Sbjct: 27218263 aaaggaacaaaagaaacaag 27218282
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>gb|AC092379.4| Homo sapiens chromosome 16 clone RP11-707E24, complete sequence
          Length = 182300

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   caaacaaaattaatcaataa 255
             ||||||||||||||||||||
Sbjct: 60965 caaacaaaattaatcaataa 60984
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>gb|AC010890.9| Homo sapiens BAC clone RP11-449L24 from 2, complete sequence
          Length = 62764

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    aaggaacaaaggaacaaaag 80
             ||||||||||||||||||||
Sbjct: 28358 aaggaacaaaggaacaaaag 28339
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>gb|AC068675.17| Homo sapiens chromosome 17, clone RP11-392O1, complete sequence
          Length = 164611

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 163    ctcagctccaatgtacatcaactg 186
              |||||||||||||| |||||||||
Sbjct: 147628 ctcagctccaatgtccatcaactg 147651
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>gb|AC164661.3| Pan troglodytes BAC clone CH251-11F8 from chromosome unknown, complete
             sequence
          Length = 184521

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 67    caaaggaacaaaagaaacaagggaaaaa 94
             |||||||||||||||| ||| |||||||
Sbjct: 71327 caaaggaacaaaagaagcaacggaaaaa 71354
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>emb|AL929193.19| Zebrafish DNA sequence from clone CH211-274P24 in linkage group 20,
             complete sequence
          Length = 159094

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 343   aggcaagcaaacatgcagaagctt 366
             |||| |||||||||||||||||||
Sbjct: 68257 aggccagcaaacatgcagaagctt 68234
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>emb|BX897716.9| Zebrafish DNA sequence from clone DKEY-177F24 in linkage group 18,
             complete sequence
          Length = 123512

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 343   aggcaagcaaacatgcagaagctt 366
             |||| |||||||||||||||||||
Sbjct: 75198 aggccagcaaacatgcagaagctt 75175
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>emb|BX545847.9| Zebrafish DNA sequence from clone RP71-14M1 in linkage group 19,
             complete sequence
          Length = 128770

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 343   aggcaagcaaacatgcagaagctt 366
             |||| |||||||||||||||||||
Sbjct: 59714 aggccagcaaacatgcagaagctt 59737
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>dbj|AK115512.1| Ciona intestinalis cDNA, clone:cieg057b06, full insert sequence
          Length = 1551

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 12   tgctttattcatattattat 31
            ||||||||||||||||||||
Sbjct: 1190 tgctttattcatattattat 1209
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>gb|AC173707.2| Mus musculus BAC clone RP23-296A12 from chromosome 16, complete
             sequence
          Length = 171458

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    aacaaaggaacaaaagaaac 84
             ||||||||||||||||||||
Sbjct: 24548 aacaaaggaacaaaagaaac 24529
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>emb|BX248089.5| Zebrafish DNA sequence from clone DKEY-21K10 in linkage group 20,
             complete sequence
          Length = 247834

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    aaaagaaacaagggaaaaat 95
             ||||||||||||||||||||
Sbjct: 47275 aaaagaaacaagggaaaaat 47294
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>emb|AL805955.26| Mouse DNA sequence from clone RP23-192A6 on chromosome 2, complete
             sequence
          Length = 182439

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    gaacaaaggaacaaaagaaa 83
             ||||||||||||||||||||
Sbjct: 70859 gaacaaaggaacaaaagaaa 70840



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    gaacaaaggaacaaaagaaa 83
             ||||||||||||||||||||
Sbjct: 20939 gaacaaaggaacaaaagaaa 20958
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>gb|AC151475.1| Mus musculus BAC clone RP23-283P1 from 5, complete sequence
          Length = 171663

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 67   caaaggaacaaaagaaacaaggga 90
            ||||| ||||||||||||||||||
Sbjct: 4325 caaagcaacaaaagaaacaaggga 4302


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,029,166
Number of Sequences: 3902068
Number of extensions: 6029166
Number of successful extensions: 125781
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 125403
Number of HSP's gapped (non-prelim): 378
length of query: 425
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 403
effective length of database: 17,147,199,772
effective search space: 6910321508116
effective search space used: 6910321508116
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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