ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast42g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EID1_ARATH (Q8LEA8) Phytochrome A-associated F-box protein (Empf... 86 3e-17
2DPOE1_HUMAN (Q07864) DNA polymerase epsilon, catalytic subunit A... 30 1.1
3MURA_PHOLL (Q7N068) UDP-N-acetylglucosamine 1-carboxyvinyltransf... 29 3.1
4THIO2_DICDI (P29446) Thioredoxin 2 (Fragment) 27 9.0

>EID1_ARATH (Q8LEA8) Phytochrome A-associated F-box protein (Empfindlicher im|
           dunkelroten Licht protein 1)
          Length = 336

 Score = 85.5 bits (210), Expect = 3e-17
 Identities = 35/46 (76%), Positives = 40/46 (86%)
 Frame = -3

Query: 389 EAWDLYSAFCLRSFHGYHDDGEPVVRAYVCENGHVAGAWTERPLYS 252
           E WDL+S+FCLR   G+HDDGEPVVRAYVCENGHV+GAWT  PLY+
Sbjct: 291 ETWDLHSSFCLRRVFGFHDDGEPVVRAYVCENGHVSGAWTALPLYT 336



to top

>DPOE1_HUMAN (Q07864) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)|
            (DNA polymerase II subunit A)
          Length = 2286

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 117  RDPHRGYVRAELIIRTCEACLAMDL 191
            RDP R YV  E+I R+C  C  +DL
Sbjct: 2145 RDPCRSYVLPEVICRSCNFCRDLDL 2169



to top

>MURA_PHOLL (Q7N068) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC|
           2.5.1.7) (Enoylpyruvate transferase)
           (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT)
          Length = 421

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 81  IHHSRMHDLGARRDPHRGYVRAELIIRTCEACLAMDLTMAERGVPVMSS 227
           +H S +  LGA      GYV+A +  R   AC+ MD       V +M++
Sbjct: 124 LHISGLEQLGAEIVLEEGYVKASVNGRLKGACIVMDKVSVGATVTIMTA 172



to top

>THIO2_DICDI (P29446) Thioredoxin 2 (Fragment)|
          Length = 88

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 126 VDLGELRGHACVSDVSFLPCFFFIR 52
           VD+ +L GH  V ++  +P F+F R
Sbjct: 56  VDIDKLSGHPIVKEIRSVPTFYFYR 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,872,487
Number of Sequences: 219361
Number of extensions: 727950
Number of successful extensions: 1825
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1825
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top