ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast42f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 196 4e-47
2dbj|AK105294.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 4e-47
3ref|XM_483231.1| Oryza sativa (japonica cultivar-group), mRNA 151 2e-33
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
5dbj|AP005245.3| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
6dbj|AP003883.3| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
7dbj|AK069460.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 2e-33
8ref|XM_481650.1| Oryza sativa (japonica cultivar-group), mRNA 60 6e-06
9dbj|AP005490.3| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
10dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 50 0.006
12dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
13gb|AC134240.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.006
14gb|AC140062.11| Homo sapiens 12 BAC RP13-298C8 (Roswell Park Can... 42 1.4
15gb|AE004782.1| Pseudomonas aeruginosa PAO1, section 343 of 529 o... 42 1.4
16dbj|D13090.1|PSERESA2 Pseudomonas aeruginosa gene for recA-relat... 42 1.4
17ref|XM_364674.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 5.6
18gb|AC122350.4| Mus musculus BAC clone RP23-383P18 from chromosom... 40 5.6
19gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 5.6
20gb|AC146172.2| Pan troglodytes BAC clone RP43-24M4 from 7, compl... 40 5.6
21ref|XM_961387.1| PREDICTED: Tribolium castaneum similar to G pro... 40 5.6
22emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete ... 40 5.6
23gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 5.6
24gb|AC079038.3|AC079038 Oryza sativa chromosome 7 clone OSJNBb002... 40 5.6
25dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
26gb|AC009258.3|AC009258 Drosophila melanogaster, chromosome 3R, r... 40 5.6
27gb|AC008254.7|AC008254 Drosophila melanogaster, chromosome 3R, r... 40 5.6
28gb|AC099663.2| Genomic sequence for Mus musculus, clone RP23-36G... 40 5.6
29dbj|AP005903.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
30dbj|AP005895.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
31dbj|AK120937.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
32dbj|AK067747.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
33dbj|AK061549.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
34dbj|AP003700.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
35gb|AE003681.5| Drosophila melanogaster chromosome 3R, section 19... 40 5.6 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  196 bits (99), Expect = 4e-47
 Identities = 204/239 (85%)
 Strand = Plus / Minus

                                                                            
Query: 174      aggctggtgaagcttctgcaagtaatctaccacgccgaacccctcgcacgccacagtgtc 233
                ||||| ||||||||| |  || || |||||||||| |||||||||||||||  || ||||
Sbjct: 18602066 aggctcgtgaagcttgttgaaatactctaccacgctgaacccctcgcacgcggcaatgtc 18602007

                                                                            
Query: 234      atcagccggcggcggtatgtacggcggccgggacacctccccgagcaagtcccacgccac 293
                 || ||||||||||| ||||||||||||||||| | ||| ||||||||||||||||| ||
Sbjct: 18602006 gtcggccggcggcgggatgtacggcggccgggagagctcgccgagcaagtcccacgcgac 18601947

                                                                            
Query: 294      gccggcgaagaacgggtgcgccctgacctcgtcggcgccgcctgaaaagcccagccttct 353
                 ||||||||||||||||| || | |||||||||||||||||| |  ||||| |||||  |
Sbjct: 18601946 tccggcgaagaacgggtgggcacggacctcgtcggcgccgccggcgaagccgagcctctt 18601887

                                                                           
Query: 354      cgcggggtccttgtccagcaggcgcgagatgacgtcggtgaggtccggccaccgccgcc 412
                || ||| |||||||| ||||| | || ||||| ||||||||| ||||||||||||||||
Sbjct: 18601886 cgtgggctccttgtcgagcagcctcgcgatgaggtcggtgagctccggccaccgccgcc 18601828



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 395     ggtccggccaccgccgcccg 414
               ||||||||||||||||||||
Sbjct: 4934925 ggtccggccaccgccgcccg 4934944
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>dbj|AK105294.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-G10, full
            insert sequence
          Length = 1721

 Score =  196 bits (99), Expect = 4e-47
 Identities = 204/239 (85%)
 Strand = Plus / Minus

                                                                        
Query: 174  aggctggtgaagcttctgcaagtaatctaccacgccgaacccctcgcacgccacagtgtc 233
            ||||| ||||||||| |  || || |||||||||| |||||||||||||||  || ||||
Sbjct: 1367 aggctcgtgaagcttgttgaaatactctaccacgctgaacccctcgcacgcggcaatgtc 1308

                                                                        
Query: 234  atcagccggcggcggtatgtacggcggccgggacacctccccgagcaagtcccacgccac 293
             || ||||||||||| ||||||||||||||||| | ||| ||||||||||||||||| ||
Sbjct: 1307 gtcggccggcggcgggatgtacggcggccgggagagctcgccgagcaagtcccacgcgac 1248

                                                                        
Query: 294  gccggcgaagaacgggtgcgccctgacctcgtcggcgccgcctgaaaagcccagccttct 353
             ||||||||||||||||| || | |||||||||||||||||| |  ||||| |||||  |
Sbjct: 1247 tccggcgaagaacgggtgggcacggacctcgtcggcgccgccggcgaagccgagcctctt 1188

                                                                       
Query: 354  cgcggggtccttgtccagcaggcgcgagatgacgtcggtgaggtccggccaccgccgcc 412
            || ||| |||||||| ||||| | || ||||| ||||||||| ||||||||||||||||
Sbjct: 1187 cgtgggctccttgtcgagcagcctcgcgatgaggtcggtgagctccggccaccgccgcc 1129
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>ref|XM_483231.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1496

 Score =  151 bits (76), Expect = 2e-33
 Identities = 145/168 (86%)
 Strand = Plus / Minus

                                                                        
Query: 235  tcagccggcggcggtatgtacggcggccgggacacctccccgagcaagtcccacgccacg 294
            |||||||||||||| ||||| ||||||||||||||| |  |||||| |||||||||||||
Sbjct: 1160 tcagccggcggcgggatgtagggcggccgggacaccacgtcgagcatgtcccacgccacg 1101

                                                                        
Query: 295  ccggcgaagaacgggtgcgccctgacctcgtcggcgccgcctgaaaagcccagccttctc 354
            ||||||||||||||||| || | |||||||||||||||||||    | ||||||||  ||
Sbjct: 1100 ccggcgaagaacgggtgagctcggacctcgtcggcgccgccttggtaccccagcctcttc 1041

                                                            
Query: 355  gcggggtccttgtccagcaggcgcgagatgacgtcggtgaggtccggc 402
              ||||||| | |||||||| |||||||||| ||||||||| ||||||
Sbjct: 1040 ctggggtccctctccagcagccgcgagatgaggtcggtgagctccggc 993
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  151 bits (76), Expect = 2e-33
 Identities = 145/168 (86%)
 Strand = Plus / Minus

                                                                            
Query: 235      tcagccggcggcggtatgtacggcggccgggacacctccccgagcaagtcccacgccacg 294
                |||||||||||||| ||||| ||||||||||||||| |  |||||| |||||||||||||
Sbjct: 24959770 tcagccggcggcgggatgtagggcggccgggacaccacgtcgagcatgtcccacgccacg 24959711

                                                                            
Query: 295      ccggcgaagaacgggtgcgccctgacctcgtcggcgccgcctgaaaagcccagccttctc 354
                ||||||||||||||||| || | |||||||||||||||||||    | ||||||||  ||
Sbjct: 24959710 ccggcgaagaacgggtgagctcggacctcgtcggcgccgccttggtaccccagcctcttc 24959651

                                                                
Query: 355      gcggggtccttgtccagcaggcgcgagatgacgtcggtgaggtccggc 402
                  ||||||| | |||||||| |||||||||| ||||||||| ||||||
Sbjct: 24959650 ctggggtccctctccagcagccgcgagatgaggtcggtgagctccggc 24959603



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                            
Query: 250      atgtacggcggccgggacacctccccgagcaagtcccacgccacgccggcgaagaacggg 309
                |||||||| ||| ||||||  || |||||||||||||| || || |||||||||||||||
Sbjct: 14478531 atgtacggtggctgggacaggtcgccgagcaagtcccatgcgactccggcgaagaacggg 14478590

                  
Query: 310      tg 311
                ||
Sbjct: 14478591 tg 14478592
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>dbj|AP005245.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0025J22
          Length = 175355

 Score =  151 bits (76), Expect = 2e-33
 Identities = 145/168 (86%)
 Strand = Plus / Minus

                                                                         
Query: 235   tcagccggcggcggtatgtacggcggccgggacacctccccgagcaagtcccacgccacg 294
             |||||||||||||| ||||| ||||||||||||||| |  |||||| |||||||||||||
Sbjct: 15886 tcagccggcggcgggatgtagggcggccgggacaccacgtcgagcatgtcccacgccacg 15827

                                                                         
Query: 295   ccggcgaagaacgggtgcgccctgacctcgtcggcgccgcctgaaaagcccagccttctc 354
             ||||||||||||||||| || | |||||||||||||||||||    | ||||||||  ||
Sbjct: 15826 ccggcgaagaacgggtgagctcggacctcgtcggcgccgccttggtaccccagcctcttc 15767

                                                             
Query: 355   gcggggtccttgtccagcaggcgcgagatgacgtcggtgaggtccggc 402
               ||||||| | |||||||| |||||||||| ||||||||| ||||||
Sbjct: 15766 ctggggtccctctccagcagccgcgagatgaggtcggtgagctccggc 15719
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>dbj|AP003883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1134_H03
          Length = 135914

 Score =  151 bits (76), Expect = 2e-33
 Identities = 145/168 (86%)
 Strand = Plus / Minus

                                                                         
Query: 235   tcagccggcggcggtatgtacggcggccgggacacctccccgagcaagtcccacgccacg 294
             |||||||||||||| ||||| ||||||||||||||| |  |||||| |||||||||||||
Sbjct: 61485 tcagccggcggcgggatgtagggcggccgggacaccacgtcgagcatgtcccacgccacg 61426

                                                                         
Query: 295   ccggcgaagaacgggtgcgccctgacctcgtcggcgccgcctgaaaagcccagccttctc 354
             ||||||||||||||||| || | |||||||||||||||||||    | ||||||||  ||
Sbjct: 61425 ccggcgaagaacgggtgagctcggacctcgtcggcgccgccttggtaccccagcctcttc 61366

                                                             
Query: 355   gcggggtccttgtccagcaggcgcgagatgacgtcggtgaggtccggc 402
               ||||||| | |||||||| |||||||||| ||||||||| ||||||
Sbjct: 61365 ctggggtccctctccagcagccgcgagatgaggtcggtgagctccggc 61318
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>dbj|AK069460.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022B21, full
            insert sequence
          Length = 1496

 Score =  151 bits (76), Expect = 2e-33
 Identities = 145/168 (86%)
 Strand = Plus / Minus

                                                                        
Query: 235  tcagccggcggcggtatgtacggcggccgggacacctccccgagcaagtcccacgccacg 294
            |||||||||||||| ||||| ||||||||||||||| |  |||||| |||||||||||||
Sbjct: 1160 tcagccggcggcgggatgtagggcggccgggacaccacgtcgagcatgtcccacgccacg 1101

                                                                        
Query: 295  ccggcgaagaacgggtgcgccctgacctcgtcggcgccgcctgaaaagcccagccttctc 354
            ||||||||||||||||| || | |||||||||||||||||||    | ||||||||  ||
Sbjct: 1100 ccggcgaagaacgggtgagctcggacctcgtcggcgccgccttggtaccccagcctcttc 1041

                                                            
Query: 355  gcggggtccttgtccagcaggcgcgagatgacgtcggtgaggtccggc 402
              ||||||| | |||||||| |||||||||| ||||||||| ||||||
Sbjct: 1040 ctggggtccctctccagcagccgcgagatgaggtcggtgagctccggc 993
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>ref|XM_481650.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 258

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 250 atgtacggcggccgggacacctccccgagcaagtcccacgccacgccggcgaagaacggg 309
           |||||||| ||| ||||||  || |||||||||||||| || || |||||||||||||||
Sbjct: 1   atgtacggtggctgggacaggtcgccgagcaagtcccatgcgactccggcgaagaacggg 60

             
Query: 310 tg 311
           ||
Sbjct: 61  tg 62
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>dbj|AP005490.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0049I01
          Length = 140261

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                         
Query: 250   atgtacggcggccgggacacctccccgagcaagtcccacgccacgccggcgaagaacggg 309
             |||||||| ||| ||||||  || |||||||||||||| || || |||||||||||||||
Sbjct: 73399 atgtacggtggctgggacaggtcgccgagcaagtcccatgcgactccggcgaagaacggg 73458

               
Query: 310   tg 311
             ||
Sbjct: 73459 tg 73460
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>dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0670E08
          Length = 133106

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                          
Query: 250    atgtacggcggccgggacacctccccgagcaagtcccacgccacgccggcgaagaacggg 309
              |||||||| ||| ||||||  || |||||||||||||| || || |||||||||||||||
Sbjct: 122814 atgtacggtggctgggacaggtcgccgagcaagtcccatgcgactccggcgaagaacggg 122873

                
Query: 310    tg 311
              ||
Sbjct: 122874 tg 122875
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                            
Query: 290     ccacgccggcgaagaacgggtgcgccctgacctcgtcggcgccgc 334
               |||||||||||||||||||||||  | ||| |||| |||||||||
Sbjct: 8059428 ccacgccggcgaagaacgggtgcctcttgatctcggcggcgccgc 8059384
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                            
Query: 290     ccacgccggcgaagaacgggtgcgccctgacctcgtcggcgccgc 334
               |||||||||||||||||||||||  | ||| |||| |||||||||
Sbjct: 8057263 ccacgccggcgaagaacgggtgcctcttgatctcggcggcgccgc 8057219
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>gb|AC134240.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0081I10,
              complete sequence
          Length = 143298

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                           
Query: 290    ccacgccggcgaagaacgggtgcgccctgacctcgtcggcgccgc 334
              |||||||||||||||||||||||  | ||| |||| |||||||||
Sbjct: 126791 ccacgccggcgaagaacgggtgcctcttgatctcggcggcgccgc 126747
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>gb|AC140062.11| Homo sapiens 12 BAC RP13-298C8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 64695

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 63    ggatatagtgattctccaagg 83
             |||||||||||||||||||||
Sbjct: 22087 ggatatagtgattctccaagg 22107
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>gb|AE004782.1| Pseudomonas aeruginosa PAO1, section 343 of 529 of the complete
           genome
          Length = 13031

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 60  gcaggatatagtgattctcca 80
           |||||||||||||||||||||
Sbjct: 801 gcaggatatagtgattctcca 781
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>dbj|D13090.1|PSERESA2 Pseudomonas aeruginosa gene for recA-related protein putatively
            necessary for cell division, complete cds
          Length = 2673

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 60   gcaggatatagtgattctcca 80
            |||||||||||||||||||||
Sbjct: 2014 gcaggatatagtgattctcca 2034
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>ref|XM_364674.1| Magnaporthe grisea 70-15 hypothetical protein (MG09519.4) partial
            mRNA
          Length = 1254

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 290  ccacgccggcgaagaacgggtgcgccctgacctcgtcggc 329
            ||||||| |||||||||||||| ||| ||| ||| |||||
Sbjct: 1024 ccacgcccgcgaagaacgggtgtgccttgatctcctcggc 985
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>gb|AC122350.4| Mus musculus BAC clone RP23-383P18 from chromosome 17, complete sequence
          Length = 198521

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    tctgcctgcggtggaggctg 179
              ||||||||||||||||||||
Sbjct: 139851 tctgcctgcggtggaggctg 139870
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 361     tccttgtccagcaggcgcga 380
               ||||||||||||||||||||
Sbjct: 3307652 tccttgtccagcaggcgcga 3307671
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>gb|AC146172.2| Pan troglodytes BAC clone RP43-24M4 from 7, complete sequence
          Length = 223283

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     ggtaaaactgacatacagca 111
              ||||||||||||||||||||
Sbjct: 196351 ggtaaaactgacatacagca 196370
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>ref|XM_961387.1| PREDICTED: Tribolium castaneum similar to G protein-coupled receptor
            kinase 1 (LOC654946), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 294  gccggcgaagaacgggtgcgccctgacctcgtcggc 329
            ||||||||| || |||||| || |||||||||||||
Sbjct: 1368 gccggcgaaaaaggggtgctccttgacctcgtcggc 1333
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>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29
          Length = 292200

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 386    cgtcggtgaggtccggccac 405
              ||||||||||||||||||||
Sbjct: 232802 cgtcggtgaggtccggccac 232821
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 362     ccttgtccagcaggcgcgag 381
               ||||||||||||||||||||
Sbjct: 2104367 ccttgtccagcaggcgcgag 2104348
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>gb|AC079038.3|AC079038 Oryza sativa chromosome 7 clone OSJNBb0024A20, complete sequence
          Length = 129838

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 391  gtgaggtccggccaccgccg 410
            ||||||||||||||||||||
Sbjct: 7200 gtgaggtccggccaccgccg 7181
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 391      gtgaggtccggccaccgccg 410
                ||||||||||||||||||||
Sbjct: 25081939 gtgaggtccggccaccgccg 25081958
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>gb|AC009258.3|AC009258 Drosophila melanogaster, chromosome 3R, region 85C-85C, BAC clone
             BACR09F04, complete sequence
          Length = 176036

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 85    gcaaaacggtaaaactgacatacagcag 112
             |||||||||||||||||  |||||||||
Sbjct: 77195 gcaaaacggtaaaactgcaatacagcag 77168
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>gb|AC008254.7|AC008254 Drosophila melanogaster, chromosome 3R, region 85C-85C, BAC clone
              BACR02G22, complete sequence
          Length = 164982

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 85     gcaaaacggtaaaactgacatacagcag 112
              |||||||||||||||||  |||||||||
Sbjct: 156033 gcaaaacggtaaaactgcaatacagcag 156006
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>gb|AC099663.2| Genomic sequence for Mus musculus, clone RP23-36G7, from chromosome 17,
             complete sequence
          Length = 78389

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   tctgcctgcggtggaggctg 179
             ||||||||||||||||||||
Sbjct: 66163 tctgcctgcggtggaggctg 66182
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>dbj|AP005903.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:B1012G11
          Length = 167168

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 395    ggtccggccaccgccgcccg 414
              ||||||||||||||||||||
Sbjct: 117457 ggtccggccaccgccgcccg 117476
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>dbj|AP005895.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0018L13
          Length = 131155

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 391    gtgaggtccggccaccgccg 410
              ||||||||||||||||||||
Sbjct: 122619 gtgaggtccggccaccgccg 122638
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>dbj|AK120937.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037A13, full
           insert sequence
          Length = 827

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 395 ggtccggccaccgccgcccg 414
           ||||||||||||||||||||
Sbjct: 141 ggtccggccaccgccgcccg 160
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>dbj|AK067747.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116L09, full
           insert sequence
          Length = 768

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 395 ggtccggccaccgccgcccg 414
           ||||||||||||||||||||
Sbjct: 82  ggtccggccaccgccgcccg 101
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>dbj|AK061549.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-A10, full
           insert sequence
          Length = 1396

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 395 ggtccggccaccgccgcccg 414
           ||||||||||||||||||||
Sbjct: 133 ggtccggccaccgccgcccg 152
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>dbj|AP003700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1003_H02
          Length = 124043

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 391  gtgaggtccggccaccgccg 410
            ||||||||||||||||||||
Sbjct: 2426 gtgaggtccggccaccgccg 2445
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>gb|AE003681.5| Drosophila melanogaster chromosome 3R, section 19 of 118 of the
             complete sequence
          Length = 306650

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 85    gcaaaacggtaaaactgacatacagcag 112
             |||||||||||||||||  |||||||||
Sbjct: 83424 gcaaaacggtaaaactgcaatacagcag 83397


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,906,960
Number of Sequences: 3902068
Number of extensions: 2906960
Number of successful extensions: 47965
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47614
Number of HSP's gapped (non-prelim): 351
length of query: 416
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 394
effective length of database: 17,147,199,772
effective search space: 6755996710168
effective search space used: 6755996710168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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