>gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence
          Length = 184425

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                         
Query: 18    gggattaaggggtttgaccgggataatccttacaaattccctaaaatacactaataccaa 77
             |||||| |||| ||||| |||||||||||| || ||| ||||||||||||||| || |||
Sbjct: 64060 gggatttagggatttgatcgggataatcctcactaatcccctaaaatacactagtatcaa 64119

                   
Query: 78    acaagg 83
             ||||||
Sbjct: 64120 acaagg 64125



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                       
Query: 86    tgaaggttggggtttcacccaatccctagggggattatcccc 127
             ||||||||||||||||| |||||||||  |||||||||||||
Sbjct: 63902 tgaaggttggggtttcatccaatccctgtggggattatcccc 63861

>gb|AC146937.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0004O15 map near R3342S, complete sequence
          Length = 140142

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 53    attccctaaaatacactaata 73
             |||||||||||||||||||||
Sbjct: 56099 attccctaaaatacactaata 56119

>ref|XM_532750.2| PREDICTED: Canis familiaris similar to aarF domain containing
           kinase 2 (LOC475527), mRNA
          Length = 1881

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 196 tcatcaagagagccccagccc 216
           |||||||||||||||||||||
Sbjct: 325 tcatcaagagagccccagccc 305

>gb|AC131671.3| Mus musculus BAC clone RP23-312H8 from chromosome 3, complete sequence
          Length = 195851

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 240    gatgttaaaaaacaaatcaga 260
              |||||||||||||||||||||
Sbjct: 169863 gatgttaaaaaacaaatcaga 169843

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 53       attccctaaaatacactaata 73
                |||||||||||||||||||||
Sbjct: 27665874 attccctaaaatacactaata 27665854

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                     
Query: 353      gccaaacaggaaaattccagccaacaggagatccacc 389
                |||| ||| ||||||||||||| | ||||||||||||
Sbjct: 27001040 gccacacaagaaaattccagccgataggagatccacc 27001076

>dbj|AP005108.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0461B08
          Length = 153743

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 353   gccaaacaggaaaattccagccaacaggagatccacc 389
             |||| ||| ||||||||||||| | ||||||||||||
Sbjct: 54242 gccacacaagaaaattccagccgataggagatccacc 54278

>gb|AF466202.2| Zea mays putative pol protein gene, partial cds; and putative gag-pol
              precursor -orf2, putative Fourf gag/pol protein, putative
              NADP-dependent malic enzyme, putative argonaute protein,
              putative pinhead protein, putative pol protein, putative
              gag protein, putative TNP2, r1-B73 proteins, putative
              genetic modifier, putative S-receptor kinase, putative
              aldose reductase-related protein, putative glutathione
              peroxidase, putative glycerol 3-phosphate permease,
              putative response regulator, and putative 4-coumarate-CoA
              ligase-like protein genes, complete cds
          Length = 290350

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                   
Query: 353    gccaaacaggaaaattccagccaacaggagatccacc 389
              |||| ||| |||||||||||||||  |||||||||||
Sbjct: 200744 gccacacaagaaaattccagccaatgggagatccacc 200708

>dbj|AK065482.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013020D20, full
            insert sequence
          Length = 1397

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 353  gccaaacaggaaaattccagccaacaggagatccacc 389
            |||| ||| ||||||||||||| | ||||||||||||
Sbjct: 1057 gccacacaagaaaattccagccgataggagatccacc 1021

>dbj|AK060868.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-H05, full
           insert sequence
          Length = 1044

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 353 gccaaacaggaaaattccagccaacaggagatccacc 389
           |||| ||| ||||||||||||| | ||||||||||||
Sbjct: 785 gccacacaagaaaattccagccgataggagatccacc 749

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 53       attccctaaaatacactaata 73
                |||||||||||||||||||||
Sbjct: 27689862 attccctaaaatacactaata 27689842

>emb|CT010515.8| M.truncatula DNA sequence from clone MTH2-146B21 on chromosome 3,
             complete sequence
          Length = 130617

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 246   aaaaaacaaatcagaatgtttcaa 269
             ||||||||||| ||||||||||||
Sbjct: 33928 aaaaaacaaatgagaatgtttcaa 33951

>emb|CR396587.8| Zebrafish DNA sequence from clone CH211-261P15 in linkage group 16,
             complete sequence
          Length = 91165

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 418   gcgaggtgctttgggtgatt 437
             ||||||||||||||||||||
Sbjct: 85394 gcgaggtgctttgggtgatt 85413

>emb|AL590085.4| Human DNA sequence from clone RP11-135G16 on chromosome 1 Contains part
             of the XPR1 gene for xenotropic and polytropic retrovirus
             receptor, complete sequence
          Length = 84057

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   taaaaaacaaatcagaatgt 264
             ||||||||||||||||||||
Sbjct: 39470 taaaaaacaaatcagaatgt 39451

>emb|AL449143.18| Human DNA sequence from clone RP11-571K22 on chromosome 1 Contains part
             of the gene for InaD-like protein (INADL), complete
             sequence
          Length = 85173

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 232   aatttaaggatgttaaaaaa 251
             ||||||||||||||||||||
Sbjct: 19117 aatttaaggatgttaaaaaa 19098

>emb|AL359744.17| Human DNA sequence from clone RP11-334D18 on chromosome Xp11.23-11.4
              Contains the 3' end of gene FLJ22843, complete sequence
          Length = 122850

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 309    aaagacatccttggccaacccata 332
              ||||| ||||||||||||||||||
Sbjct: 119499 aaagatatccttggccaacccata 119476

>gb|AC026887.9| Homo sapiens chromosome 10 clone RP11-544P1, complete sequence
          Length = 187495

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   ctaatctcctccaaaaggcc 148
             ||||||||||||||||||||
Sbjct: 70600 ctaatctcctccaaaaggcc 70619

>gb|AC158588.3| Mus musculus chromosome 5, clone RP24-372I18, complete sequence
          Length = 179677

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   aaaaacaaatcagaatgttt 266
             ||||||||||||||||||||
Sbjct: 92506 aaaaacaaatcagaatgttt 92487

>emb|AL031684.14|HS917N8 Human DNA sequence from clone RP5-917N8 on chromosome 20p11.22-12.1
              Contains STSs and GSSs, complete sequence
          Length = 143712

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     taatccttacaaattcccta 60
              ||||||||||||||||||||
Sbjct: 105016 taatccttacaaattcccta 104997

>gb|AC163286.4| Mus musculus BAC clone RP23-334L22 from chromosome 12, complete
             sequence
          Length = 239973

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   aggatgttaaaaaacaaatc 257
             ||||||||||||||||||||
Sbjct: 58318 aggatgttaaaaaacaaatc 58337

>emb|AL596168.1| Listeria innocua Clip11262 complete genome, segment 6/12
          Length = 333050

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 52   aattccctaaaatacactaa 71
            ||||||||||||||||||||
Sbjct: 1071 aattccctaaaatacactaa 1090

>gb|AC097064.2| Homo sapiens chromosome 1 clone RP11-524L19, complete sequence
          Length = 183425

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 232    aatttaaggatgttaaaaaa 251
              ||||||||||||||||||||
Sbjct: 143915 aatttaaggatgttaaaaaa 143896

>gb|AC120781.23| Pan troglodytes clone rp43-28m17, complete sequence
          Length = 184706

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    aaaatacactaataccaaac 79
             ||||||||||||||||||||
Sbjct: 46167 aaaatacactaataccaaac 46148

>gb|AC026392.7| Homo sapiens chromosome 10 clone RP11-238C10, complete sequence
          Length = 177829

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   ctaatctcctccaaaaggcc 148
             ||||||||||||||||||||
Sbjct: 29460 ctaatctcctccaaaaggcc 29441

>gb|AF295068.2|AF314199S7 Homo sapiens neuroplastoma apoptosis-related RNA-binding protein
             (CUGBP2) gene, exons 10, 11a, 11b, 12, 13a, 13b, 14, and
             complete cds, alternatively spliced
          Length = 78359

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   ctaatctcctccaaaaggcc 148
             ||||||||||||||||||||
Sbjct: 45928 ctaatctcctccaaaaggcc 45909

>gb|AC139993.16| Mus musculus chromosome 12, clone RP23-67O10, complete sequence
          Length = 239577

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 238    aggatgttaaaaaacaaatc 257
              ||||||||||||||||||||
Sbjct: 200623 aggatgttaaaaaacaaatc 200642

>gb|AC073869.5| Homo sapiens BAC clone RP11-109E12 from 2, complete sequence
          Length = 195280

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    aaaatacactaataccaaac 79
             ||||||||||||||||||||
Sbjct: 77863 aaaatacactaataccaaac 77882

>gb|AC093787.3| Homo sapiens BAC clone RP11-215P9 from 2, complete sequence
          Length = 86945

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   taaaaaacaaatcagaatgt 264
             ||||||||||||||||||||
Sbjct: 47240 taaaaaacaaatcagaatgt 47221

>gb|AC016711.9| Homo sapiens BAC clone RP11-249O24 from 2, complete sequence
          Length = 122880

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   gccaagccaaacaggaaaat 367
             ||||||||||||||||||||
Sbjct: 85553 gccaagccaaacaggaaaat 85572

>emb|CT485607.8| Mouse DNA sequence from clone RP23-157B3 on chromosome 9, complete
              sequence
          Length = 197959

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    tcatcaagagagccccagcc 215
              ||||||||||||||||||||
Sbjct: 170272 tcatcaagagagccccagcc 170291

>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome
          Length = 2905187

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 52      aattccctaaaatacactaa 71
               ||||||||||||||||||||
Sbjct: 1246210 aattccctaaaatacactaa 1246229


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,755,152
Number of Sequences: 3902068
Number of extensions: 4755152
Number of successful extensions: 92369
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92252
Number of HSP's gapped (non-prelim): 117
length of query: 467
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 445
effective length of database: 17,147,199,772
effective search space: 7630503898540
effective search space used: 7630503898540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)