| Clone Name | rbast42a02 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ000226.1|HVJ000226 Hordeum vulgare mRNA for expressed sequence tag Length = 334 Score = 367 bits (185), Expect = 2e-98 Identities = 202/205 (98%), Gaps = 2/205 (0%) Strand = Plus / Minus Query: 240 ccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaacttct 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 334 ccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaacttct 275 Query: 300 cgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaagtcct 359 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 274 caacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaagtcct 215 Query: 360 tgagcagcttcccgtgctccttctggatgttcaggcagatggtcactgcctggtggagga 419 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 214 tgagcagcttcccgtgctccttctggatgttcaggcagatggtcactgcctggtggagg- 156 Query: 420 aactc-gcgatctgctcgaagtcct 443 ||||| ||||||||||||||||||| Sbjct: 155 aactcggcgatctgctcgaagtcct 131
>gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041C22, complete sequence Length = 161172 Score = 278 bits (140), Expect = 1e-71 Identities = 196/212 (92%), Gaps = 2/212 (0%) Strand = Plus / Minus Query: 233 tcctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggca 292 ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| ||| Sbjct: 86750 tcctactccttgtacttcatgctgtcgagggtgaagccgggcatgtcgaaggaggtggcg 86691 Query: 293 aacttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggag 352 |||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||| Sbjct: 86690 aacttctcgacctccagcttgaggttctcgatgtccttgttgttcaccaggcccttggag 86631 Query: 353 aagtccttgagcagcttcccgtgctccttctggatgttcaggcagatggtcactgcctgg 412 ||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||| Sbjct: 86630 aagtccttgaggagcttgccgtgctccttctggatgttgaggcagatggtcacggcctgg 86571 Query: 413 tggaggaaactcg-cgatctgctcgaagtcct 443 |||||| |||||| |||||||||| ||||||| Sbjct: 86570 tggagg-aactcgccgatctgctcaaagtcct 86540 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Minus Query: 10 attggcaaatactcgacattccatgat 36 ||||||||||||| ||||||||||||| Sbjct: 87039 attggcaaatacttgacattccatgat 87013
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 278 bits (140), Expect = 1e-71 Identities = 196/212 (92%), Gaps = 2/212 (0%) Strand = Plus / Minus Query: 233 tcctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggca 292 ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| ||| Sbjct: 14863684 tcctactccttgtacttcatgctgtcgagggtgaagccgggcatgtcgaaggaggtggcg 14863625 Query: 293 aacttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggag 352 |||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||| Sbjct: 14863624 aacttctcgacctccagcttgaggttctcgatgtccttgttgttcaccaggcccttggag 14863565 Query: 353 aagtccttgagcagcttcccgtgctccttctggatgttcaggcagatggtcactgcctgg 412 ||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||| Sbjct: 14863564 aagtccttgaggagcttgccgtgctccttctggatgttgaggcagatggtcacggcctgg 14863505 Query: 413 tggaggaaactcg-cgatctgctcgaagtcct 443 |||||| |||||| |||||||||| ||||||| Sbjct: 14863504 tggagg-aactcgccgatctgctcaaagtcct 14863474 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Minus Query: 10 attggcaaatactcgacattccatgat 36 ||||||||||||| ||||||||||||| Sbjct: 14863973 attggcaaatacttgacattccatgat 14863947
>dbj|AK105983.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G03, full insert sequence Length = 1153 Score = 278 bits (140), Expect = 1e-71 Identities = 196/212 (92%), Gaps = 2/212 (0%) Strand = Plus / Minus Query: 233 tcctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggca 292 ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| ||| Sbjct: 864 tcctactccttgtacttcatgctgtcgagggtgaagccgggcatgtcgaaggaggtggcg 805 Query: 293 aacttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggag 352 |||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||| Sbjct: 804 aacttctcgacctccagcttgaggttctcgatgtccttgttgttcaccaggcccttggag 745 Query: 353 aagtccttgagcagcttcccgtgctccttctggatgttcaggcagatggtcactgcctgg 412 ||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||| Sbjct: 744 aagtccttgaggagcttgccgtgctccttctggatgttgaggcagatggtcacggcctgg 685 Query: 413 tggaggaaactcg-cgatctgctcgaagtcct 443 |||||| |||||| |||||||||| ||||||| Sbjct: 684 tggagg-aactcgccgatctgctcaaagtcct 654 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Minus Query: 10 attggcaaatactcgacattccatgat 36 ||||||||||||| ||||||||||||| Sbjct: 1153 attggcaaatacttgacattccatgat 1127
>dbj|AK101450.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033039N02, full insert sequence Length = 1896 Score = 278 bits (140), Expect = 1e-71 Identities = 196/212 (92%), Gaps = 2/212 (0%) Strand = Plus / Minus Query: 233 tcctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggca 292 ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| ||| Sbjct: 1499 tcctactccttgtacttcatgctgtcgagggtgaagccgggcatgtcgaaggaggtggcg 1440 Query: 293 aacttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggag 352 |||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1439 aacttctcgacctccagcttgaggttctcgatgtccttgttgttcaccaggcccttggag 1380 Query: 353 aagtccttgagcagcttcccgtgctccttctggatgttcaggcagatggtcactgcctgg 412 ||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||| Sbjct: 1379 aagtccttgaggagcttgccgtgctccttctggatgttgaggcagatggtcacggcctgg 1320 Query: 413 tggaggaaactcg-cgatctgctcgaagtcct 443 |||||| |||||| |||||||||| ||||||| Sbjct: 1319 tggagg-aactcgccgatctgctcaaagtcct 1289 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Minus Query: 10 attggcaaatactcgacattccatgat 36 ||||||||||||| ||||||||||||| Sbjct: 1786 attggcaaatacttgacattccatgat 1760
>dbj|AK071541.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100I04, full insert sequence Length = 1811 Score = 278 bits (140), Expect = 1e-71 Identities = 196/212 (92%), Gaps = 2/212 (0%) Strand = Plus / Minus Query: 233 tcctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggca 292 ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| ||| Sbjct: 1499 tcctactccttgtacttcatgctgtcgagggtgaagccgggcatgtcgaaggaggtggcg 1440 Query: 293 aacttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggag 352 |||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1439 aacttctcgacctccagcttgaggttctcgatgtccttgttgttcaccaggcccttggag 1380 Query: 353 aagtccttgagcagcttcccgtgctccttctggatgttcaggcagatggtcactgcctgg 412 ||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||| Sbjct: 1379 aagtccttgaggagcttgccgtgctccttctggatgttgaggcagatggtcacggcctgg 1320 Query: 413 tggaggaaactcg-cgatctgctcgaagtcct 443 |||||| |||||| |||||||||| ||||||| Sbjct: 1319 tggagg-aactcgccgatctgctcaaagtcct 1289 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Minus Query: 10 attggcaaatactcgacattccatgat 36 ||||||||||||| ||||||||||||| Sbjct: 1787 attggcaaatacttgacattccatgat 1761
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 278 bits (140), Expect = 1e-71 Identities = 196/212 (92%), Gaps = 2/212 (0%) Strand = Plus / Minus Query: 233 tcctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggca 292 ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| ||| Sbjct: 14943651 tcctactccttgtacttcatgctgtcgagggtgaagccgggcatgtcgaaggaggtggcg 14943592 Query: 293 aacttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggag 352 |||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||| Sbjct: 14943591 aacttctcgacctccagcttgaggttctcgatgtccttgttgttcaccaggcccttggag 14943532 Query: 353 aagtccttgagcagcttcccgtgctccttctggatgttcaggcagatggtcactgcctgg 412 ||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||| Sbjct: 14943531 aagtccttgaggagcttgccgtgctccttctggatgttgaggcagatggtcacggcctgg 14943472 Query: 413 tggaggaaactcg-cgatctgctcgaagtcct 443 |||||| |||||| |||||||||| ||||||| Sbjct: 14943471 tggagg-aactcgccgatctgctcaaagtcct 14943441 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Minus Query: 10 attggcaaatactcgacattccatgat 36 ||||||||||||| ||||||||||||| Sbjct: 14943940 attggcaaatacttgacattccatgat 14943914
>dbj|AK105624.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C10, full insert sequence Length = 1811 Score = 270 bits (136), Expect = 4e-69 Identities = 195/212 (91%), Gaps = 2/212 (0%) Strand = Plus / Minus Query: 233 tcctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggca 292 ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| ||| Sbjct: 1498 tcctactccttgtacttcatgctgtcgagggtgaagccgggcatgtcgaaggaggtggcg 1439 Query: 293 aacttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggag 352 |||||||||||||| | |||||||||||| | |||||||||||||||||||||||||||| Sbjct: 1438 aacttctcgacctccagcttgaggttctcgacgtccttgttgttcaccaggcccttggag 1379 Query: 353 aagtccttgagcagcttcccgtgctccttctggatgttcaggcagatggtcactgcctgg 412 ||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||| Sbjct: 1378 aagtccttgaggagcttgccgtgctccttctggatgttgaggcagatggtcacggcctgg 1319 Query: 413 tggaggaaactcg-cgatctgctcgaagtcct 443 |||||| |||||| |||||||||| ||||||| Sbjct: 1318 tggagg-aactcgccgatctgctcaaagtcct 1288 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Minus Query: 10 attggcaaatactcgacattccatgat 36 ||||||||||||| ||||||||||||| Sbjct: 1787 attggcaaatacttgacattccatgat 1761
>gb|AY105338.1| Zea mays PCO102700 mRNA sequence Length = 1951 Score = 250 bits (126), Expect = 3e-63 Identities = 171/186 (91%) Strand = Plus / Minus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 1624 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 1565 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 1564 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 1505 Query: 355 gtccttgagcagcttcccgtgctccttctggatgttcaggcagatggtcactgcctggtg 414 ||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1504 gtccttgaggagcttgccgtactccttctggatgttcaggcagatggtcactgcctggtg 1445 Query: 415 gaggaa 420 |||||| Sbjct: 1444 gaggaa 1439
>gb|AF498509.1| Zea mays cultivar DE811 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 375 Score = 190 bits (96), Expect = 3e-45 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 221 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 280 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct: 281 cttctccacctggaccttgaggttctcaatgtccttgttgttcaccangcccttgttgaa 340 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 341 gtccttgaggagcttgccgtactccttctggatgt 375
>gb|AF498521.1| Zea mays cultivar C_9 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 375 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 221 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 280 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 281 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 340 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 341 gtccttgaggagcttgccgtactccttctggatgt 375
>gb|AF498520.1| Zea mays cultivar F_7 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 374 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 220 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 279 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 280 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 339 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 340 gtccttgaggagcttgccgtactccttctggatgt 374
>gb|AF498519.1| Zea mays cultivar D_9 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 375 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 221 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 280 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 281 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 340 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 341 gtccttgaggagcttgccgtactccttctggatgt 375
>gb|AF498518.1| Zea mays cultivar D_6 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 375 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 221 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 280 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 281 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 340 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 341 gtccttgaggagcttgccgtactccttctggatgt 375
>gb|AF498517.1| Zea mays cultivar F_1 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 375 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 221 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 280 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 281 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 340 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 341 gtccttgaggagcttgccgtactccttctggatgt 375
>gb|AF498516.1| Zea mays cultivar Mo17 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 374 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 220 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 279 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 280 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 339 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 340 gtccttgaggagcttgccgtactccttctggatgt 374
>gb|AF498515.1| Zea mays cultivar D_7 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 369 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 215 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 274 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 275 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 334 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 335 gtccttgaggagcttgccgtactccttctggatgt 369
>gb|AF498514.1| Zea mays cultivar Wf9Ht hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 376 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 222 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 281 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 282 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 341 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 342 gtccttgaggagcttgccgtactccttctggatgt 376
>gb|AF498510.1| Zea mays cultivar H60 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 369 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 215 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 274 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 275 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 334 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 335 gtccttgaggagcttgccgtactccttctggatgt 369
>gb|AF498508.1| Zea mays cultivar 684 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 376 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 222 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 281 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 282 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 341 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 342 gtccttgaggagcttgccgtactccttctggatgt 376
>gb|AF498507.1| Zea mays cultivar D71-4HT hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 366 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 212 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 271 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 272 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 331 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 332 gtccttgaggagcttgccgtactccttctggatgt 366
>gb|AF498506.1| Zea mays cultivar H99 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 371 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 217 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 276 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 277 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 336 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 337 gtccttgaggagcttgccgtactccttctggatgt 371
>gb|AF498505.1| Zea mays cultivar CO109 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 371 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 217 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 276 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 277 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 336 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 337 gtccttgaggagcttgccgtactccttctggatgt 371
>gb|AF498504.1| Zea mays cultivar I_1 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 375 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 221 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 280 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 281 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 340 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 341 gtccttgaggagcttgccgtactccttctggatgt 375
>gb|AF498503.1| Zea mays cultivar B73 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 376 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 222 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 281 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 282 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 341 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 342 gtccttgaggagcttgccgtactccttctggatgt 376
>gb|AF498502.1| Zea mays cultivar F_2 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 376 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 222 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 281 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 282 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 341 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 342 gtccttgaggagcttgccgtactccttctggatgt 376
>gb|AF498501.1| Zea mays cultivar G_1 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 372 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 218 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 277 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 278 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 337 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 338 gtccttgaggagcttgccgtactccttctggatgt 372
>gb|AF498500.1| Zea mays cultivar B_6 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 374 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 220 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 279 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 280 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 339 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 340 gtccttgaggagcttgccgtactccttctggatgt 374
>gb|AF498499.1| Zea mays cultivar H_4 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 369 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 215 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 274 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 275 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 334 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 335 gtccttgaggagcttgccgtactccttctggatgt 369
>gb|AF498498.1| Zea mays cultivar F_4 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 375 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 221 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 280 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 281 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 340 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 341 gtccttgaggagcttgccgtactccttctggatgt 375
>gb|AF498497.1| Zea mays cultivar F_3 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 376 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 222 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 281 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 282 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 341 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 342 gtccttgaggagcttgccgtactccttctggatgt 376
>gb|AF498496.1| Zea mays cultivar F_5 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 373 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 219 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 278 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 279 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 338 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 339 gtccttgaggagcttgccgtactccttctggatgt 373
>gb|AF498495.1| Zea mays cultivar H_5 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 374 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 220 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 279 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 280 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 339 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 340 gtccttgaggagcttgccgtactccttctggatgt 374
>gb|AF498492.1| Zea mays cultivar 647 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 366 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 212 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 271 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 272 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccaggcccttgttgaa 331 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 332 gtccttgaggagcttgccgtactccttctggatgt 366
>gb|AF498511.1| Zea mays cultivar B84 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 376 Score = 182 bits (92), Expect = 6e-43 Identities = 139/155 (89%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaaggagagggcaaa 294 |||||||||||| ||||||||||| |||||||| || |||||||| |||||| |||||| Sbjct: 222 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaaggagtcggcaaa 281 Query: 295 cttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggcccttggagaa 354 |||||| |||| ||||||||||||||| ||||||||||||||||||| ||||||| ||| Sbjct: 282 cttctccacctggaccttgaggttctcgatgtccttgttgttcaccangcccttgttgaa 341 Query: 355 gtccttgagcagcttcccgtgctccttctggatgt 389 ||||||||| ||||| |||| |||||||||||||| Sbjct: 342 gtccttgaggagcttgccgtactccttctggatgt 376
>gb|DQ175859.1| Hordeum vulgare clone DsC31 Ds insertion site flanking region genomic sequence Length = 659 Score = 109 bits (55), Expect = 8e-21 Identities = 70/75 (93%) Strand = Plus / Plus Query: 346 cttggagaagtccttgagcagcttcccgtgctccttctggatgttcaggcagatggtcac 405 |||||||||||||||||||||||| ||||||||||||||||| |||| |||||| ||||| Sbjct: 511 cttggagaagtccttgagcagcttgccgtgctccttctggattttcaagcagatcgtcac 570 Query: 406 tgcctggtggaggaa 420 |||||||||||||| Sbjct: 571 agcctggtggaggaa 585
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 103 bits (52), Expect = 5e-19 Identities = 112/132 (84%) Strand = Plus / Plus Query: 289 ggcaaacttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggccctt 348 |||||||||||| ||||| || |||||| ||||||||||||||||||| ||||||||| Sbjct: 12437386 ggcaaacttctccacctccgccctgaggtcctcaatgtccttgttgttctccaggccctc 12437445 Query: 349 ggagaagtccttgagcagcttcccgtgctccttctggatgttcaggcagatggtcactgc 408 | ||||| |||||| ||||| || |||||||||| | | || ||||||||||||||| Sbjct: 12437446 gttgaagtacttgagaagcttgccacgctccttctgaacatccaagcagatggtcactgc 12437505 Query: 409 ctggtggaggaa 420 |||||| ||||| Sbjct: 12437506 ctggtgaaggaa 12437517
>dbj|AK101088.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024L02, full insert sequence Length = 1944 Score = 103 bits (52), Expect = 5e-19 Identities = 112/132 (84%) Strand = Plus / Minus Query: 289 ggcaaacttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggccctt 348 |||||||||||| ||||| || |||||| ||||||||||||||||||| ||||||||| Sbjct: 1640 ggcaaacttctccacctccgccctgaggtcctcaatgtccttgttgttctccaggccctc 1581 Query: 349 ggagaagtccttgagcagcttcccgtgctccttctggatgttcaggcagatggtcactgc 408 | ||||| |||||| ||||| || |||||||||| | | || ||||||||||||||| Sbjct: 1580 gttgaagtacttgagaagcttgccacgctccttctgaacatccaagcagatggtcactgc 1521 Query: 409 ctggtggaggaa 420 |||||| ||||| Sbjct: 1520 ctggtgaaggaa 1509
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 103 bits (52), Expect = 5e-19 Identities = 112/132 (84%) Strand = Plus / Plus Query: 289 ggcaaacttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggccctt 348 |||||||||||| ||||| || |||||| ||||||||||||||||||| ||||||||| Sbjct: 12391756 ggcaaacttctccacctccgccctgaggtcctcaatgtccttgttgttctccaggccctc 12391815 Query: 349 ggagaagtccttgagcagcttcccgtgctccttctggatgttcaggcagatggtcactgc 408 | ||||| |||||| ||||| || |||||||||| | | || ||||||||||||||| Sbjct: 12391816 gttgaagtacttgagaagcttgccacgctccttctgaacatccaagcagatggtcactgc 12391875 Query: 409 ctggtggaggaa 420 |||||| ||||| Sbjct: 12391876 ctggtgaaggaa 12391887
>emb|AL713942.4|CNS07YPB Oryza sativa chromosome 12, . BAC OSJNBa0009F05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 163702 Score = 103 bits (52), Expect = 5e-19 Identities = 112/132 (84%) Strand = Plus / Plus Query: 289 ggcaaacttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggccctt 348 |||||||||||| ||||| || |||||| ||||||||||||||||||| ||||||||| Sbjct: 151751 ggcaaacttctccacctccgccctgaggtcctcaatgtccttgttgttctccaggccctc 151810 Query: 349 ggagaagtccttgagcagcttcccgtgctccttctggatgttcaggcagatggtcactgc 408 | ||||| |||||| ||||| || |||||||||| | | || ||||||||||||||| Sbjct: 151811 gttgaagtacttgagaagcttgccacgctccttctgaacatccaagcagatggtcactgc 151870 Query: 409 ctggtggaggaa 420 |||||| ||||| Sbjct: 151871 ctggtgaaggaa 151882
>emb|AL954826.3|CNS08CD2 Oryza sativa chromosome 12, . BAC OSJNBb0080P14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132241 Score = 103 bits (52), Expect = 5e-19 Identities = 112/132 (84%) Strand = Plus / Plus Query: 289 ggcaaacttctcgacctcgaccttgaggttctcaatgtccttgttgttcaccaggccctt 348 |||||||||||| ||||| || |||||| ||||||||||||||||||| ||||||||| Sbjct: 38864 ggcaaacttctccacctccgccctgaggtcctcaatgtccttgttgttctccaggccctc 38923 Query: 349 ggagaagtccttgagcagcttcccgtgctccttctggatgttcaggcagatggtcactgc 408 | ||||| |||||| ||||| || |||||||||| | | || ||||||||||||||| Sbjct: 38924 gttgaagtacttgagaagcttgccacgctccttctgaacatccaagcagatggtcactgc 38983 Query: 409 ctggtggaggaa 420 |||||| ||||| Sbjct: 38984 ctggtgaaggaa 38995
>gb|AY106587.1| Zea mays PCO066539 mRNA sequence Length = 603 Score = 83.8 bits (42), Expect = 4e-13 Identities = 117/142 (82%) Strand = Plus / Minus Query: 264 tgaagccgggcatgtcaaaggagagggcaaacttctcgacctcgaccttgaggttctcaa 323 ||||||| ||||||||||| || ||| |||||||||||||| || | |||||||| | Sbjct: 246 tgaagccaggcatgtcaaatgaagtggcgaacttctcgacctccgccctcaggttctcta 187 Query: 324 tgtccttgttgttcaccaggcccttggagaagtccttgagcagcttcccgtgctccttct 383 |||||||||| | ||||| |||||| |||||||||||| | ||| || |||||| || Sbjct: 186 tgtccttgttttgcaccaagcccttcttgaagtccttgagaatcttgccatgctccgcct 127 Query: 384 ggatgttcaggcagatggtcac 405 ||||| ||| |||||||||||| Sbjct: 126 ggatgctcaagcagatggtcac 105
>gb|AF498512.1| Zea mays cultivar H98 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 259 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtcaaagg 284 |||||||||||| ||||||||||| |||||||| || |||||||| |||| Sbjct: 210 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtcgaagg 259
>gb|AF498513.1| Zea mays cultivar C123 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 256 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 235 ctactccttgtacttcatgctctcgagcgtgaagccgggcatgtc 279 |||||||||||| ||||||||||| |||||||| || |||||||| Sbjct: 210 ctactccttgtatttcatgctctcaagcgtgaacccaggcatgtc 254
>dbj|AB154528.1| Cucumis melo 6F11 mRNA for hypothetical protein, partial cds Length = 963 Score = 50.1 bits (25), Expect = 0.006 Identities = 139/177 (78%) Strand = Plus / Minus Query: 265 gaagccgggcatgtcaaaggagagggcaaacttctcgacctcgaccttgaggttctcaat 324 |||||| |||||||| || ||| || ||| |||||||| || ||||||| | || || Sbjct: 944 gaagcctggcatgtcgaaagagccggaaaatttctcgacatcagccttgagctcttcgat 885 Query: 325 gtccttgttgttcaccaggcccttggagaagtccttgagcagcttcccgtgctccttctg 384 ||||||||||| || || |||||| ||||||||| | |||||| || | |||||||| Sbjct: 884 ttccttgttgtttacaagacccttgttgaagtccttcaacagctttccatattccttctg 825 Query: 385 gatgttcaggcagatggtcactgcctggtggaggaaactcgcgatctgctcgaagtc 441 |||||||| | |||||| || || |||| ||||| ||||||||| |||||||| Sbjct: 824 gatgttcaaggtgatggttacagcacggtgcaggaactccgcgatctgttcgaagtc 768
>emb|AL137848.5| Human DNA sequence from clone RP11-77D6 on chromosome 9q31.1-32 Contains part of a novel gene, the OGN gene for osteoglycin (osteoinductive factor, mimecan), the OMD gene for osteomodulin, the ASPN gene for asporin (LRR class 1) and the 3' end of the ECM2 gene for extracellular matrix protein 2 (female organ and adipocyte specific), complete sequence Length = 152341 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 397 gatggtcactgcctggtggaggaaa 421 |||||||||||||||| |||||||| Sbjct: 61928 gatggtcactgcctgggggaggaaa 61952
>dbj|AB009589.1| Homo sapiens gene for Osteomodulin, complete cds Length = 12414 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 397 gatggtcactgcctggtggaggaaa 421 |||||||||||||||| |||||||| Sbjct: 7498 gatggtcactgcctgggggaggaaa 7474
>ref|NM_117463.2| Arabidopsis thaliana glycine hydroxymethyltransferase AT4G13890 mRNA, complete cds Length = 1592 Score = 40.1 bits (20), Expect = 6.0 Identities = 53/64 (82%) Strand = Plus / Minus Query: 326 tccttgttgttcaccaggcccttggagaagtccttgagcagcttcccgtgctccttctgg 385 |||||||||||||||| |||||| ||||||||| | || ||| |||| || || |||| Sbjct: 1330 tccttgttgttcaccaaacccttgttgaagtccttcatcaccttaccgtactgctcctgg 1271 Query: 386 atgt 389 |||| Sbjct: 1270 atgt 1267
>ref|XM_510545.1| PREDICTED: Pan troglodytes similar to transmembrane channel-like 3 (LOC453589), mRNA Length = 4479 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 tcaggcagatggtcactgcc 409 |||||||||||||||||||| Sbjct: 1951 tcaggcagatggtcactgcc 1932
>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940117D9, complete sequence Length = 143368 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 ctcgacctcgaccttgaggt 317 |||||||||||||||||||| Sbjct: 43746 ctcgacctcgaccttgaggt 43727
>gb|AY316747.1| Rhizobium sp. NGR234 megaplasmid 2 contig 1, complete sequence Length = 357655 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 ggttctcaatgtccttgttg 334 |||||||||||||||||||| Sbjct: 235786 ggttctcaatgtccttgttg 235805
>gb|AC132366.4| Mus musculus BAC clone RP23-461N12 from chromosome 7, complete sequence Length = 183964 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 tcctactccttgtacttcat 252 |||||||||||||||||||| Sbjct: 29775 tcctactccttgtacttcat 29756
>ref|XM_774258.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_165_11606_4440) partial mRNA Length = 7167 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 364 cagcttcccgtgctccttctggat 387 |||||||||||||| ||||||||| Sbjct: 1776 cagcttcccgtgctgcttctggat 1753
>ref|XM_545878.2| PREDICTED: Canis familiaris similar to transmembrane channel-like gene family 3 (LOC488760), mRNA Length = 3399 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 tcaggcagatggtcactgcc 409 |||||||||||||||||||| Sbjct: 955 tcaggcagatggtcactgcc 936
>gb|AY236490.1| Homo sapiens transmembrane channel-like protein 3 (TMC3) mRNA, complete cds Length = 2442 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 tcaggcagatggtcactgcc 409 |||||||||||||||||||| Sbjct: 1033 tcaggcagatggtcactgcc 1014
>gb|AY263163.1| Homo sapiens TMC3 protein (TMC3) mRNA, complete cds Length = 4746 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 tcaggcagatggtcactgcc 409 |||||||||||||||||||| Sbjct: 994 tcaggcagatggtcactgcc 975
>emb|AL161537.2|ATCHRIV37 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37 Length = 199667 Score = 40.1 bits (20), Expect = 6.0 Identities = 53/64 (82%) Strand = Plus / Plus Query: 326 tccttgttgttcaccaggcccttggagaagtccttgagcagcttcccgtgctccttctgg 385 |||||||||||||||| |||||| ||||||||| | || ||| |||| || || |||| Sbjct: 124342 tccttgttgttcaccaaacccttgttgaagtccttcatcaccttaccgtactgctcctgg 124401 Query: 386 atgt 389 |||| Sbjct: 124402 atgt 124405
>emb|AL035528.2|ATF18A5 Arabidopsis thaliana DNA chromosome 4, BAC clone F18A5 (ESSA project) Length = 118718 Score = 40.1 bits (20), Expect = 6.0 Identities = 53/64 (82%) Strand = Plus / Plus Query: 326 tccttgttgttcaccaggcccttggagaagtccttgagcagcttcccgtgctccttctgg 385 |||||||||||||||| |||||| ||||||||| | || ||| |||| || || |||| Sbjct: 103250 tccttgttgttcaccaaacccttgttgaagtccttcatcaccttaccgtactgctcctgg 103309 Query: 386 atgt 389 |||| Sbjct: 103310 atgt 103313
>emb|BX640632.1|HSM806678 Homo sapiens mRNA; cDNA DKFZp686L09244 (from clone DKFZp686L09244) Length = 11482 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 tcaggcagatggtcactgcc 409 |||||||||||||||||||| Sbjct: 1091 tcaggcagatggtcactgcc 1072
>gb|AC103858.2| Homo sapiens chromosome 15, clone RP11-761I4, complete sequence Length = 194996 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 tcaggcagatggtcactgcc 409 |||||||||||||||||||| Sbjct: 167491 tcaggcagatggtcactgcc 167510
>gb|AC109809.3| Homo sapiens chromosome 15, clone CTD-2240J17, complete sequence Length = 116491 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 tcaggcagatggtcactgcc 409 |||||||||||||||||||| Sbjct: 76587 tcaggcagatggtcactgcc 76568
>ref|XM_937643.1| PREDICTED: Homo sapiens transmembrane channel-like 3 (TMC3), mRNA Length = 3303 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 tcaggcagatggtcactgcc 409 |||||||||||||||||||| Sbjct: 955 tcaggcagatggtcactgcc 936
>ref|XM_930010.1| PREDICTED: Homo sapiens transmembrane channel-like 3 (TMC3), mRNA Length = 3303 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 tcaggcagatggtcactgcc 409 |||||||||||||||||||| Sbjct: 955 tcaggcagatggtcactgcc 936
>gb|AC130532.3| Mus musculus BAC clone RP23-189G24 from 7, complete sequence Length = 207333 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 tcctactccttgtacttcat 252 |||||||||||||||||||| Sbjct: 200636 tcctactccttgtacttcat 200617
>gb|U00090.1| Rhizobium sp. NGR234 plasmid pNGR234a, complete sequence Length = 536165 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 aaggcttagaagcgagacaa 212 |||||||||||||||||||| Sbjct: 236545 aaggcttagaagcgagacaa 236526 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,786,364 Number of Sequences: 3902068 Number of extensions: 3786364 Number of successful extensions: 73326 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73162 Number of HSP's gapped (non-prelim): 163 length of query: 443 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 421 effective length of database: 17,147,199,772 effective search space: 7218971104012 effective search space used: 7218971104012 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)