| Clone Name | rbast41e02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY112452.1| Zea mays CL286_2 mRNA sequence Length = 1510 Score = 178 bits (90), Expect = 8e-42 Identities = 210/250 (84%) Strand = Plus / Minus Query: 89 agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 148 ||||||||||||| ||||| | | |||||||| |||||||||| ||||| ||||| | Sbjct: 1374 agaatcacaactcatcgtttgctgaggagctgtcgcccatgagctcgtcgagggagaatt 1315 Query: 149 cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 208 | |||||||| |||||||||||||| ||||||||||| || || ||| ||| || || | Sbjct: 1314 catcctcctcaatgacctctccatctttgccgtcccacggctcggacgcgactactgtag 1255 Query: 209 gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactcgg 268 | || | | |||||||||||| |||||||| || ||||||||||||||||| |||||| Sbjct: 1254 gtgcatcgttcagaggaaggtttccctttccaccacgccctgcctccttcacgaactcga 1195 Query: 269 tgattccggcgagctcgaaggcgctacggagcggagcgtatgcgcctttcttcacgttga 328 ||||| || || ||| |||||| |||||||| ||||||||||| |||||||||||||||| Sbjct: 1194 tgatttcgtcgcgctggaaggcactacggagtggagcgtatgcacctttcttcacgttga 1135 Query: 329 gagcgaccat 338 |||| ||||| Sbjct: 1134 gagctaccat 1125
>gb|AY739290.1| Zea mays protein disulfide isomerase (PDIL2-3) mRNA, complete cds Length = 1531 Score = 178 bits (90), Expect = 8e-42 Identities = 210/250 (84%) Strand = Plus / Minus Query: 89 agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 148 ||||||||||||| ||||| | | |||||||| |||||||||| ||||| ||||| | Sbjct: 1374 agaatcacaactcatcgtttgctgaggagctgtcgcccatgagctcgtcgagggagaatt 1315 Query: 149 cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 208 | |||||||| |||||||||||||| ||||||||||| || || ||| ||| || || | Sbjct: 1314 catcctcctcaatgacctctccatctttgccgtcccacggctcggacgcgactactgtag 1255 Query: 209 gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactcgg 268 | || | | |||||||||||| |||||||| || ||||||||||||||||| |||||| Sbjct: 1254 gtgcatcgttcagaggaaggtttccctttccaccacgccctgcctccttcacgaactcga 1195 Query: 269 tgattccggcgagctcgaaggcgctacggagcggagcgtatgcgcctttcttcacgttga 328 ||||| || || ||| |||||| |||||||| ||||||||||| |||||||||||||||| Sbjct: 1194 tgatttcgtcgcgctggaaggcactacggagtggagcgtatgcacctttcttcacgttga 1135 Query: 329 gagcgaccat 338 |||| ||||| Sbjct: 1134 gagctaccat 1125
>dbj|AK072941.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150F04, full insert sequence Length = 1738 Score = 139 bits (70), Expect = 7e-30 Identities = 205/250 (82%) Strand = Plus / Minus Query: 89 agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 148 |||||||||||||||| || | |||| |||| ||||| |||||||| || ||||| | Sbjct: 1573 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 1514 Query: 149 cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 208 ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| | Sbjct: 1513 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 1454 Query: 209 gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactcgg 268 ||| || |||| |||||| || ||||| || ||||||||||| |||||||||||||| | Sbjct: 1453 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccttcacaaactcag 1394 Query: 269 tgattccggcgagctcgaaggcgctacggagcggagcgtatgcgcctttcttcacgttga 328 | ||| | | |||| ||| || |||||||| ||||| ||||||||||| ||||||||| Sbjct: 1393 ttatttcatcaagctggaaagcactacggagtggagcatatgcgccttttttcacgttgt 1334 Query: 329 gagcgaccat 338 |||| ||||| Sbjct: 1333 gagcaaccat 1324
>dbj|AK062254.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-G06, full insert sequence Length = 1642 Score = 131 bits (66), Expect = 2e-27 Identities = 204/250 (81%) Strand = Plus / Minus Query: 89 agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 148 |||||||||||||||| || | |||| |||| ||||| |||||||| || ||||| | Sbjct: 1429 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 1370 Query: 149 cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 208 ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| | Sbjct: 1369 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 1310 Query: 209 gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactcgg 268 ||| || |||| |||||| || ||||| || ||||||||||| ||| |||||||||| | Sbjct: 1309 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccctcacaaactcag 1250 Query: 269 tgattccggcgagctcgaaggcgctacggagcggagcgtatgcgcctttcttcacgttga 328 | ||| | | |||| ||| || |||||||| ||||| ||||||||||| |||||||||| Sbjct: 1249 ttatttcatcaagctggaaagcactacggagtggagcatatgcgccttttttcacgttga 1190 Query: 329 gagcgaccat 338 | || ||||| Sbjct: 1189 gggcaaccat 1180
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 107 bits (54), Expect = 2e-20 Identities = 147/178 (82%) Strand = Plus / Minus Query: 89 agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 148 |||||||||||||||| || | |||| |||| ||||| |||||||| || ||||| | Sbjct: 16881040 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 16880981 Query: 149 cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 208 ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| | Sbjct: 16880980 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 16880921 Query: 209 gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactc 266 ||| || |||| |||||| || ||||| || ||||||||||| |||||||||||||| Sbjct: 16880920 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccttcacaaactc 16880863 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 292 ctacggagcggagcgtatgcgcctttcttcacgttgagagcgaccat 338 |||||||| ||||| ||||||||||| |||||||||||||| ||||| Sbjct: 16880755 ctacggagtggagcatatgcgccttttttcacgttgagagcaaccat 16880709
>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0488D02 Length = 154537 Score = 107 bits (54), Expect = 2e-20 Identities = 147/178 (82%) Strand = Plus / Minus Query: 89 agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 148 |||||||||||||||| || | |||| |||| ||||| |||||||| || ||||| | Sbjct: 10853 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 10794 Query: 149 cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 208 ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| | Sbjct: 10793 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 10734 Query: 209 gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactc 266 ||| || |||| |||||| || ||||| || ||||||||||| |||||||||||||| Sbjct: 10733 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccttcacaaactc 10676 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 292 ctacggagcggagcgtatgcgcctttcttcacgttgagagcgaccat 338 |||||||| ||||| ||||||||||| |||||||||||||| ||||| Sbjct: 10568 ctacggagtggagcatatgcgccttttttcacgttgagagcaaccat 10522
>dbj|AP005559.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1163_C07 Length = 107121 Score = 107 bits (54), Expect = 2e-20 Identities = 147/178 (82%) Strand = Plus / Minus Query: 89 agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 148 |||||||||||||||| || | |||| |||| ||||| |||||||| || ||||| | Sbjct: 78731 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 78672 Query: 149 cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 208 ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| | Sbjct: 78671 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 78612 Query: 209 gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactc 266 ||| || |||| |||||| || ||||| || ||||||||||| |||||||||||||| Sbjct: 78611 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccttcacaaactc 78554 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 292 ctacggagcggagcgtatgcgcctttcttcacgttgagagcgaccat 338 |||||||| ||||| ||||||||||| |||||||||||||| ||||| Sbjct: 78446 ctacggagtggagcatatgcgccttttttcacgttgagagcaaccat 78400
>gb|AC153385.3| Mus musculus 6 BAC RP23-64D14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226269 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 272 ttccggcgagctcgaaggcgc 292 ||||||||||||||||||||| Sbjct: 14568 ttccggcgagctcgaaggcgc 14588
>emb|BX511005.6| Zebrafish DNA sequence from clone DKEY-72N1 in linkage group 5, complete sequence Length = 139111 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 caaattgtacagtgtacacat 41 ||||||||||||||||||||| Sbjct: 59485 caaattgtacagtgtacacat 59505
>gb|AE004686.1| Pseudomonas aeruginosa PAO1, section 247 of 529 of the complete genome Length = 10905 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 tcctcgatgacctctccatcc 174 ||||||||||||||||||||| Sbjct: 9036 tcctcgatgacctctccatcc 9016
>ref|XM_483499.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1345 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 tgacctctccatccttgccg 180 |||||||||||||||||||| Sbjct: 1050 tgacctctccatccttgccg 1031
>gb|AC110913.13| Mus musculus chromosome 19, clone RP24-399E19, complete sequence Length = 208309 Score = 40.1 bits (20), Expect = 4.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 227 ggttgccctttccgccgcgccctgcctccttc 258 ||||||||||||| || | ||||||||||||| Sbjct: 75976 ggttgccctttccccctctccctgcctccttc 76007
>ref|XM_953631.1| Neurospora crassa OR74A hypothetical protein (NCU09658.1) partial mRNA Length = 3048 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 tcctcgatgacctctccatc 173 |||||||||||||||||||| Sbjct: 1370 tcctcgatgacctctccatc 1351
>ref|XM_330307.1| Neurospora crassa OR74A hypothetical protein (NCU09658.1) partial mRNA Length = 3048 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 tcctcgatgacctctccatc 173 |||||||||||||||||||| Sbjct: 1370 tcctcgatgacctctccatc 1351
>gb|AC119218.7| Mus musculus chromosome 7, clone RP24-200I20, complete sequence Length = 171061 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 gagaactcgtcctcctcgat 161 |||||||||||||||||||| Sbjct: 170896 gagaactcgtcctcctcgat 170915
>emb|AJ224870.1|SCAJ4870 Streptomyces clavuligerus lexA, nrdR & nrdJ genes Length = 5940 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 ctcgtcctcctcgatgacct 166 |||||||||||||||||||| Sbjct: 5665 ctcgtcctcctcgatgacct 5646
>gb|AC162304.4| Mus musculus chromosome 7, clone RP23-350J16, complete sequence Length = 219899 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 gagaactcgtcctcctcgat 161 |||||||||||||||||||| Sbjct: 33851 gagaactcgtcctcctcgat 33870
>emb|AL772193.5| Zebrafish DNA sequence from clone CH211-194C5 in linkage group 7 Contains a novel gene similar to PPP1R14B (protein phosphatase 1, regulatory (inhibitor) subunit 14B), a novel gene similar to BRMS1 (breast cancer metastasis-suppressor 1 (BRMS1), the pc gene for pyruvate carboxylase and three putative novel retrotransposons, complete sequence Length = 192531 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 tgcctccttcacaaactcgg 268 |||||||||||||||||||| Sbjct: 144220 tgcctccttcacaaactcgg 144201
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 tgacctctccatccttgccg 180 |||||||||||||||||||| Sbjct: 26540041 tgacctctccatccttgccg 26540060
>dbj|AP005529.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0702E04 Length = 190948 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 tgacctctccatccttgccg 180 |||||||||||||||||||| Sbjct: 88908 tgacctctccatccttgccg 88927
>emb|BX470085.6| Zebrafish DNA sequence from clone DKEY-238K17 in linkage group 20, complete sequence Length = 107263 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 tgcctccttcacaaactcgg 268 |||||||||||||||||||| Sbjct: 31198 tgcctccttcacaaactcgg 31217
>dbj|AK119370.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-H09, full insert sequence Length = 2945 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 tgacctctccatccttgccg 180 |||||||||||||||||||| Sbjct: 1139 tgacctctccatccttgccg 1158
>dbj|AK073978.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076N21, full insert sequence Length = 1345 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 tgacctctccatccttgccg 180 |||||||||||||||||||| Sbjct: 1050 tgacctctccatccttgccg 1031
>tpe|BN000648.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx119 gene for class III peroxidase 119 precursor, exons 1-3 Length = 2477 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 tgacctctccatccttgccg 180 |||||||||||||||||||| Sbjct: 2448 tgacctctccatccttgccg 2429
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 ggaccaccgtcggggcgccc 216 |||||||||||||||||||| Sbjct: 157627 ggaccaccgtcggggcgccc 157646 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,012,468 Number of Sequences: 3902068 Number of extensions: 2012468 Number of successful extensions: 35063 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34994 Number of HSP's gapped (non-prelim): 62 length of query: 338 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 316 effective length of database: 17,147,199,772 effective search space: 5418515127952 effective search space used: 5418515127952 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)