>ref|XM_464870.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1515

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 226  ttggtgtactcgtccatctccatcttgtacgcggccat 263
            ||||||||||| ||||| ||| |||||||||| |||||
Sbjct: 1448 ttggtgtactcctccatgtccctcttgtacgccgccat 1411

>ref|XM_743082.1| Aspergillus fumigatus Af293 hypothetical protein (Afu5g01670)
           partial mRNA
          Length = 1176

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 284 tccacaccttcttctccgcgga 305
           ||||||||||||||||||||||
Sbjct: 569 tccacaccttcttctccgcgga 590

>gb|AC104373.4| Homo sapiens chromosome 8, clone RP11-1144P22, complete sequence
          Length = 89086

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 274   gctttctggctccacaccttct 295
             ||||||||||||||||||||||
Sbjct: 42756 gctttctggctccacaccttct 42735

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                     
Query: 226     ttggtgtactcgtccatctccatcttgtacgcggccat 263
               ||||||||||| ||||| ||| |||||||||| |||||
Sbjct: 8934579 ttggtgtactcctccatgtccctcttgtacgccgccat 8934616

>dbj|AP004801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0613F08
          Length = 142937

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                    
Query: 226    ttggtgtactcgtccatctccatcttgtacgcggccat 263
              ||||||||||| ||||| ||| |||||||||| |||||
Sbjct: 139597 ttggtgtactcctccatgtccctcttgtacgccgccat 139634

>dbj|AP005803.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OSJNBa0060K08
          Length = 159626

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 226  ttggtgtactcgtccatctccatcttgtacgcggccat 263
            ||||||||||| ||||| ||| |||||||||| |||||
Sbjct: 7188 ttggtgtactcctccatgtccctcttgtacgccgccat 7225

>dbj|AK070270.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023045H02, full
           insert sequence
          Length = 1031

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 226 ttggtgtactcgtccatctccatcttgtacgcggccat 263
           ||||||||||| ||||| ||| |||||||||| |||||
Sbjct: 743 ttggtgtactcctccatgtccctcttgtacgccgccat 706

>gb|AY104178.1| Zea mays PCO133155 mRNA sequence
          Length = 1188

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 306 gctcaggtccttccacttcaccgagattagcgcg 339
           |||||| |||||||||||||||| ||| ||||||
Sbjct: 857 gctcagttccttccacttcaccgtgatgagcgcg 824

>gb|AC159999.6| Mus musculus BAC clone RP23-6P9 from chromosome 10, complete sequence
          Length = 216489

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 209    atgaggaggtgtgagctttgg 229
              |||||||||||||||||||||
Sbjct: 146813 atgaggaggtgtgagctttgg 146833

>emb|BX004971.7| Zebrafish DNA sequence from clone DKEY-121A9 in linkage group 20,
             complete sequence
          Length = 199780

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 49    cttgccgaagcaaccatgcat 69
             |||||||||||||||||||||
Sbjct: 28691 cttgccgaagcaaccatgcat 28711

>ref|XM_418237.1| PREDICTED: Gallus gallus similar to regulator of nonsense transcripts
            1; up-frameshift mutation 1 homolog (S. cerevisiae);
            nonsense mRNA reducing factor 1; yeast Upf1p homolog;
            delta helicase (LOC420119), mRNA
          Length = 4411

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 114  accactaaggattcagagac 133
            ||||||||||||||||||||
Sbjct: 4162 accactaaggattcagagac 4143

>gb|AC008164.3| Homo sapiens BAC clone RP11-65N17 from 2, complete sequence
          Length = 151829

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    aagcaaccatgcatggcata 75
             ||||||||||||||||||||
Sbjct: 14609 aagcaaccatgcatggcata 14590

>dbj|AB008267.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMG4
          Length = 79046

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 80    tagaaaacaacttcatgaccagaa 103
             |||||||||||| |||||||||||
Sbjct: 57014 tagaaaacaactccatgaccagaa 56991


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,665,106
Number of Sequences: 3902068
Number of extensions: 2665106
Number of successful extensions: 53863
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53803
Number of HSP's gapped (non-prelim): 60
length of query: 369
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 347
effective length of database: 17,147,199,772
effective search space: 5950078320884
effective search space used: 5950078320884
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)