>gb|AY111614.1| Zea mays CL44864_1 mRNA sequence
          Length = 727

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                       
Query: 210 tctgcctggcaaacggggaggtggtaggtgtcgagctgccagtacttttgcttcaccccc 269
           |||| ||||||| | ||||||| ||||||||| || |||||||||||  ||||||| |||
Sbjct: 159 tctgactggcaagcagggaggtagtaggtgtccagttgccagtacttccgcttcacgccc 218

            
Query: 270 t 270
           |
Sbjct: 219 t 219

>ref|XM_469859.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1008

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                      
Query: 210 tctgcctggcaaacggggaggtggtaggtgtcgagctgccagtacttttgcttcacccc 268
           ||||| |||||||| ||||||||||| || || |  |||||||| || |||||||||||
Sbjct: 989 tctgcttggcaaactgggaggtggtaagtatccaattgccagtatttctgcttcacccc 931

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                           
Query: 210      tctgcctggcaaacggggaggtggtaggtgtcgagctgccagtacttttgcttcacccc 268
                ||||| |||||||| ||||||||||| || || |  |||||||| || |||||||||||
Sbjct: 31172790 tctgcttggcaaactgggaggtggtaagtatccaattgccagtatttctgcttcacccc 31172848

>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete
             sequence
          Length = 128017

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                        
Query: 210   tctgcctggcaaacggggaggtggtaggtgtcgagctgccagtacttttgcttcacccc 268
             ||||| |||||||| ||||||||||| || || |  |||||||| || |||||||||||
Sbjct: 93431 tctgcttggcaaactgggaggtggtaagtatccaattgccagtatttctgcttcacccc 93489

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                           
Query: 210      tctgcctggcaaacggggaggtggtaggtgtcgagctgccagtacttttgcttcacccc 268
                ||||| |||||||| ||||||||||| || || |  |||||||| || |||||||||||
Sbjct: 31263313 tctgcttggcaaactgggaggtggtaagtatccaattgccagtatttctgcttcacccc 31263371

>dbj|AK101534.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048C14, full
            insert sequence
          Length = 1492

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 210  tctgcctggcaaacggggaggtggtaggtgtcgagctgccagtacttttgcttcacccc 268
            ||||| |||||||| ||||||||||| || || |  |||||||| || |||||||||||
Sbjct: 1021 tctgcttggcaaactgggaggtggtaagtatccaattgccagtatttctgcttcacccc 963

>dbj|AK064205.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-E04, full
            insert sequence
          Length = 1473

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 210  tctgcctggcaaacggggaggtggtaggtgtcgagctgccagtacttttgcttcacccc 268
            ||||| |||||||| ||||||||||| || || |  |||||||| || |||||||||||
Sbjct: 1008 tctgcttggcaaactgggaggtggtaagtatccaattgccagtatttctgcttcacccc 950

>gb|BT019299.1| Zea mays clone Contig972.F mRNA sequence
          Length = 928

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                       
Query: 210 tctgcctggcaaacggggaggtggtaggtgtcgagctgccagtacttttgcttcaccccc 269
           |||| ||||||| | ||||||| ||||| |||  | |||||||||||  |||||||||||
Sbjct: 420 tctgactggcaagcagggaggtagtaggggtcccgttgccagtacttccgcttcaccccc 479

            
Query: 270 t 270
           |
Sbjct: 480 t 480

>gb|DQ302790.1| Spiromyces aspiralis isolate AFTOL-ID 185 RNA polymerase II second
           largest subunit precursor (RPB2) gene, partial cds
          Length = 3174

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 63  ggcgtgacctgatcctgaac 82
           ||||||||||||||||||||
Sbjct: 971 ggcgtgacctgatcctgaac 952

>dbj|AK173741.1| Ciona intestinalis cDNA, clone:cieg011n06, full insert sequence
          Length = 2880

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 23   gtttcatcggaaccacaatc 42
            ||||||||||||||||||||
Sbjct: 1293 gtttcatcggaaccacaatc 1312

>emb|AL591433.6| Mouse DNA sequence from clone RP23-268N22 on chromosome 11, complete
              sequence
          Length = 203336

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     atcaggcaggcaggcgtgac 70
              ||||||||||||||||||||
Sbjct: 201325 atcaggcaggcaggcgtgac 201306


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,812,187
Number of Sequences: 3902068
Number of extensions: 1812187
Number of successful extensions: 27327
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27309
Number of HSP's gapped (non-prelim): 18
length of query: 270
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 248
effective length of database: 17,147,199,772
effective search space: 4252505543456
effective search space used: 4252505543456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)