ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast40f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_468370.1| Oryza sativa (japonica cultivar-group), mRNA 157 3e-35
2ref|XM_507547.1| PREDICTED Oryza sativa (japonica cultivar-group... 157 3e-35
3ref|XM_507041.2| PREDICTED Oryza sativa (japonica cultivar-group... 157 3e-35
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 157 3e-35
5dbj|AP005691.3| Oryza sativa (japonica cultivar-group) genomic D... 157 3e-35
6dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic D... 157 3e-35
7dbj|AK104442.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 3e-35
8dbj|AK102943.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 3e-35
9dbj|AK060071.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 3e-35
10gb|AY107896.1| Zea mays PCO141631 mRNA sequence 153 4e-34
11gb|AY596547.1| Saccharum officinarum clone SCAGLR1043G02, comple... 143 4e-31
12gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.1
13gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 1.1
14gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 1.1
15gb|AY662656.1| Homo sapiens SKCG1 (SKCG1) mRNA, complete cds 40 4.4
16gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 4.4
17gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
18gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 4.4
19gb|AC159435.1| Trypanosoma brucei chromosome 8 clone RPCI93-29H2... 40 4.4
20gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 40 4.4
21gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 4.4
22gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 4.4
23ref|XM_819320.1| Trypanosoma brucei TREU927 clone RPCI93-29H22 h... 40 4.4
24gb|AC135396.32| Medicago truncatula clone mth2-33o18, complete s... 40 4.4
25emb|AL590128.11| Human DNA sequence from clone RP11-312B8 on chr... 40 4.4
26emb|AL583838.7| Human DNA sequence from clone RP11-536O4 on chro... 40 4.4
27emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 4.4
28dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 4.4
29gb|AE009904.1|AE009904 Pyrobaculum aerophilum strain IM2 section... 40 4.4
30gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 4.4
31gb|S75487.1| adh3a=alcohol dehydrogenase ADH, adh3b=alcohol dehy... 40 4.4
32gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 4.4
33gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 4.4
34dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
35dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
36gb|AE004812.1| Pseudomonas aeruginosa PAO1, section 373 of 529 o... 40 4.4
37gb|AY007371.1| Burkholderia pseudomallei beta-ketoadipyl CoA thi... 40 4.4
38dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 4.4
39dbj|AP003027.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 4.4
40gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 4.4
41gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
42emb|AL731759.2|CNS07YPA Oryza sativa chromosome 12, . BAC OSJNBa... 40 4.4 
>ref|XM_468370.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1099

 Score =  157 bits (79), Expect = 3e-35
 Identities = 124/139 (89%)
 Strand = Plus / Minus

                                                                       
Query: 188 gccgtggcgctccataacacggcgcatggccagcgccgccgcctcgctcgcccgcagcgt 247
           |||||| |||||||| || || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 887 gccgtgccgctccatgacccgccgcatcgccagcgccgccgcctcgctcgcccgcagcgt 828

                                                                       
Query: 248 gccactcgccatgagcgccgcaaactctctcatcacctcttcctgcaccttccccctcgc 307
            || |||||||||| |||||| ||||| | ||||||||| ||||||||||||||||||||
Sbjct: 827 cccgctcgccatgatcgccgcgaactcccgcatcacctcctcctgcaccttccccctcgc 768

                              
Query: 308 gcttccgagagggtcagcc 326
           ||  ||||| |||||||||
Sbjct: 767 gccgccgagcgggtcagcc 749
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>ref|XM_507547.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0053L11.37
           mRNA
          Length = 1151

 Score =  157 bits (79), Expect = 3e-35
 Identities = 124/139 (89%)
 Strand = Plus / Minus

                                                                       
Query: 188 gccgtggcgctccataacacggcgcatggccagcgccgccgcctcgctcgcccgcagcgt 247
           |||||| |||||||| || || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 865 gccgtgccgctccatgacccgccgcatcgccagcgccgccgcctcgctcgcccgcagcgt 806

                                                                       
Query: 248 gccactcgccatgagcgccgcaaactctctcatcacctcttcctgcaccttccccctcgc 307
            || |||||||||| |||||| ||||| | ||||||||| ||||||||||||||||||||
Sbjct: 805 cccgctcgccatgatcgccgcgaactcccgcatcacctcctcctgcaccttccccctcgc 746

                              
Query: 308 gcttccgagagggtcagcc 326
           ||  ||||| |||||||||
Sbjct: 745 gccgccgagcgggtcagcc 727
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>ref|XM_507041.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0053L11.37
           mRNA
          Length = 1218

 Score =  157 bits (79), Expect = 3e-35
 Identities = 124/139 (89%)
 Strand = Plus / Minus

                                                                       
Query: 188 gccgtggcgctccataacacggcgcatggccagcgccgccgcctcgctcgcccgcagcgt 247
           |||||| |||||||| || || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 890 gccgtgccgctccatgacccgccgcatcgccagcgccgccgcctcgctcgcccgcagcgt 831

                                                                       
Query: 248 gccactcgccatgagcgccgcaaactctctcatcacctcttcctgcaccttccccctcgc 307
            || |||||||||| |||||| ||||| | ||||||||| ||||||||||||||||||||
Sbjct: 830 cccgctcgccatgatcgccgcgaactcccgcatcacctcctcctgcaccttccccctcgc 771

                              
Query: 308 gcttccgagagggtcagcc 326
           ||  ||||| |||||||||
Sbjct: 770 gccgccgagcgggtcagcc 752
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  157 bits (79), Expect = 3e-35
 Identities = 124/139 (89%)
 Strand = Plus / Plus

                                                                            
Query: 188      gccgtggcgctccataacacggcgcatggccagcgccgccgcctcgctcgcccgcagcgt 247
                |||||| |||||||| || || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 34898407 gccgtgccgctccatgacccgccgcatcgccagcgccgccgcctcgctcgcccgcagcgt 34898466

                                                                            
Query: 248      gccactcgccatgagcgccgcaaactctctcatcacctcttcctgcaccttccccctcgc 307
                 || |||||||||| |||||| ||||| | ||||||||| ||||||||||||||||||||
Sbjct: 34898467 cccgctcgccatgatcgccgcgaactcccgcatcacctcctcctgcaccttccccctcgc 34898526

                                   
Query: 308      gcttccgagagggtcagcc 326
                ||  ||||| |||||||||
Sbjct: 34898527 gccgccgagcgggtcagcc 34898545
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>dbj|AP005691.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0053L11
          Length = 147123

 Score =  157 bits (79), Expect = 3e-35
 Identities = 124/139 (89%)
 Strand = Plus / Plus

                                                                          
Query: 188    gccgtggcgctccataacacggcgcatggccagcgccgccgcctcgctcgcccgcagcgt 247
              |||||| |||||||| || || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 120002 gccgtgccgctccatgacccgccgcatcgccagcgccgccgcctcgctcgcccgcagcgt 120061

                                                                          
Query: 248    gccactcgccatgagcgccgcaaactctctcatcacctcttcctgcaccttccccctcgc 307
               || |||||||||| |||||| ||||| | ||||||||| ||||||||||||||||||||
Sbjct: 120062 cccgctcgccatgatcgccgcgaactcccgcatcacctcctcctgcaccttccccctcgc 120121

                                 
Query: 308    gcttccgagagggtcagcc 326
              ||  ||||| |||||||||
Sbjct: 120122 gccgccgagcgggtcagcc 120140
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>dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1293_E04
          Length = 118192

 Score =  157 bits (79), Expect = 3e-35
 Identities = 124/139 (89%)
 Strand = Plus / Plus

                                                                         
Query: 188   gccgtggcgctccataacacggcgcatggccagcgccgccgcctcgctcgcccgcagcgt 247
             |||||| |||||||| || || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 57904 gccgtgccgctccatgacccgccgcatcgccagcgccgccgcctcgctcgcccgcagcgt 57963

                                                                         
Query: 248   gccactcgccatgagcgccgcaaactctctcatcacctcttcctgcaccttccccctcgc 307
              || |||||||||| |||||| ||||| | ||||||||| ||||||||||||||||||||
Sbjct: 57964 cccgctcgccatgatcgccgcgaactcccgcatcacctcctcctgcaccttccccctcgc 58023

                                
Query: 308   gcttccgagagggtcagcc 326
             ||  ||||| |||||||||
Sbjct: 58024 gccgccgagcgggtcagcc 58042
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>dbj|AK104442.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-B11, full
           insert sequence
          Length = 1151

 Score =  157 bits (79), Expect = 3e-35
 Identities = 124/139 (89%)
 Strand = Plus / Minus

                                                                       
Query: 188 gccgtggcgctccataacacggcgcatggccagcgccgccgcctcgctcgcccgcagcgt 247
           |||||| |||||||| || || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 865 gccgtgccgctccatgacccgccgcatcgccagcgccgccgcctcgctcgcccgcagcgt 806

                                                                       
Query: 248 gccactcgccatgagcgccgcaaactctctcatcacctcttcctgcaccttccccctcgc 307
            || |||||||||| |||||| ||||| | ||||||||| ||||||||||||||||||||
Sbjct: 805 cccgctcgccatgatcgccgcgaactcccgcatcacctcctcctgcaccttccccctcgc 746

                              
Query: 308 gcttccgagagggtcagcc 326
           ||  ||||| |||||||||
Sbjct: 745 gccgccgagcgggtcagcc 727
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>dbj|AK102943.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114L12, full
           insert sequence
          Length = 1099

 Score =  157 bits (79), Expect = 3e-35
 Identities = 124/139 (89%)
 Strand = Plus / Minus

                                                                       
Query: 188 gccgtggcgctccataacacggcgcatggccagcgccgccgcctcgctcgcccgcagcgt 247
           |||||| |||||||| || || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 887 gccgtgccgctccatgacccgccgcatcgccagcgccgccgcctcgctcgcccgcagcgt 828

                                                                       
Query: 248 gccactcgccatgagcgccgcaaactctctcatcacctcttcctgcaccttccccctcgc 307
            || |||||||||| |||||| ||||| | ||||||||| ||||||||||||||||||||
Sbjct: 827 cccgctcgccatgatcgccgcgaactcccgcatcacctcctcctgcaccttccccctcgc 768

                              
Query: 308 gcttccgagagggtcagcc 326
           ||  ||||| |||||||||
Sbjct: 767 gccgccgagcgggtcagcc 749
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>dbj|AK060071.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A06, full
           insert sequence
          Length = 1218

 Score =  157 bits (79), Expect = 3e-35
 Identities = 124/139 (89%)
 Strand = Plus / Minus

                                                                       
Query: 188 gccgtggcgctccataacacggcgcatggccagcgccgccgcctcgctcgcccgcagcgt 247
           |||||| |||||||| || || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 890 gccgtgccgctccatgacccgccgcatcgccagcgccgccgcctcgctcgcccgcagcgt 831

                                                                       
Query: 248 gccactcgccatgagcgccgcaaactctctcatcacctcttcctgcaccttccccctcgc 307
            || |||||||||| |||||| ||||| | ||||||||| ||||||||||||||||||||
Sbjct: 830 cccgctcgccatgatcgccgcgaactcccgcatcacctcctcctgcaccttccccctcgc 771

                              
Query: 308 gcttccgagagggtcagcc 326
           ||  ||||| |||||||||
Sbjct: 770 gccgccgagcgggtcagcc 752
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>gb|AY107896.1| Zea mays PCO141631 mRNA sequence
          Length = 541

 Score =  153 bits (77), Expect = 4e-34
 Identities = 132/149 (88%), Gaps = 1/149 (0%)
 Strand = Plus / Minus

                                                                       
Query: 178 tggcgccgtcgccgtggcgctccataacacggcgcatggccagcgccgccgcctcgctcg 237
           ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct: 281 tggcgccgtcgccgtggcgctccatgacccggcgcatggccagcgccgccgcctcgctgg 222

                                                                       
Query: 238 cccgcagcgtgccactcgccatgagcgccgcaaactctctcatcacctcttcctgcacct 297
           |||| || || || || |||||||  ||||| |||||  |||||||||| ||||||||||
Sbjct: 221 cccgtag-gtaccgctggccatgatggccgcgaactccttcatcacctcctcctgcacct 163

                                        
Query: 298 tccccctcgcgcttccgagagggtcagcc 326
           ||||||| ||||| ||||| |||||||||
Sbjct: 162 tccccctggcgctcccgagcgggtcagcc 134
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>gb|AY596547.1| Saccharum officinarum clone SCAGLR1043G02, complete sequence
          Length = 984

 Score =  143 bits (72), Expect = 4e-31
 Identities = 129/148 (87%)
 Strand = Plus / Minus

                                                                       
Query: 178 tggcgccgtcgccgtggcgctccataacacggcgcatggccagcgccgccgcctcgctcg 237
           |||||| |||||| ||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct: 895 tggcgcggtcgccatggcgctccatgacccggcgcatggccagcgccgccgcctcgctgg 836

                                                                       
Query: 238 cccgcagcgtgccactcgccatgagcgccgcaaactctctcatcacctcttcctgcacct 297
           |||  |||||||| || |||||||   |||| ||||| ||||||||||| ||||||||||
Sbjct: 835 ccccaagcgtgccgctggccatgatgcccgcgaactccctcatcacctcctcctgcacct 776

                                       
Query: 298 tccccctcgcgcttccgagagggtcagc 325
           | ||||| ||||| ||||| ||||||||
Sbjct: 775 ttcccctggcgctcccgagcgggtcagc 748
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 217     ccagcgccgccgcctcgctcgcccg 241
               ||||| |||||||||||||||||||
Sbjct: 3898220 ccagcaccgccgcctcgctcgcccg 3898244



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 215     ggccagcgccgccgcctcgc 234
               ||||||||||||||||||||
Sbjct: 3839551 ggccagcgccgccgcctcgc 3839532



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    cgccgtcgccgtggcgctcc 200
              ||||||||||||||||||||
Sbjct: 885593 cgccgtcgccgtggcgctcc 885612
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 181     cgccgtcgccgtggcgctcca 201
               |||||||||||||||||||||
Sbjct: 1754548 cgccgtcgccgtggcgctcca 1754528
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 215     ggccagcgccgccgcctcgctcgcc 239
               ||||||||||||||||||| |||||
Sbjct: 2111787 ggccagcgccgccgcctcgatcgcc 2111811
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>gb|AY662656.1| Homo sapiens SKCG1 (SKCG1) mRNA, complete cds
          Length = 2090

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 33   atgtgaacaaatcagacaaataaa 56
            ||||||| ||||||||||||||||
Sbjct: 2002 atgtgaagaaatcagacaaataaa 1979
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 215     ggccagcgccgccgcctcgc 234
               ||||||||||||||||||||
Sbjct: 2462039 ggccagcgccgccgcctcgc 2462058
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>gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBb0004A05, complete sequence
          Length = 157913

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   agcgccgccgcctcgctcgc 238
             ||||||||||||||||||||
Sbjct: 87686 agcgccgccgcctcgctcgc 87705
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 215     ggccagcgccgccgcctcgctcgc 238
               ||||||||||||||||||| ||||
Sbjct: 2174126 ggccagcgccgccgcctcggtcgc 2174149
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>gb|AC159435.1| Trypanosoma brucei chromosome 8 clone RPCI93-29H22, complete sequence
          Length = 148464

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   tcacctcttcctgcaccttc 299
             ||||||||||||||||||||
Sbjct: 48022 tcacctcttcctgcaccttc 48041
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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 280     tcacctcttcctgcaccttc 299
               ||||||||||||||||||||
Sbjct: 1258245 tcacctcttcctgcaccttc 1258264
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 220     gcgccgccgcctcgctcgcc 239
               ||||||||||||||||||||
Sbjct: 2204810 gcgccgccgcctcgctcgcc 2204791
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 220     gcgccgccgcctcgctcgcc 239
               ||||||||||||||||||||
Sbjct: 3891135 gcgccgccgcctcgctcgcc 3891116
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>ref|XM_819320.1| Trypanosoma brucei TREU927 clone RPCI93-29H22 hypothetical protein
            (Tb927.8.4240) partial mRNA
          Length = 5070

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 280  tcacctcttcctgcaccttc 299
            ||||||||||||||||||||
Sbjct: 4603 tcacctcttcctgcaccttc 4584
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>gb|AC135396.32| Medicago truncatula clone mth2-33o18, complete sequence
          Length = 132211

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    ataaattgagttccatgctg 71
             ||||||||||||||||||||
Sbjct: 84822 ataaattgagttccatgctg 84803
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>emb|AL590128.11| Human DNA sequence from clone RP11-312B8 on chromosome 1 Contains a novel
              gene, the 5' end of the CAMTA1 gene for calmodulin binding
              transcription activator 1, a ribosomal protein L37 (RPL37)
              pseudogene and a CpG island, complete sequence
          Length = 204394

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 40     caaatcagacaaataaattgagtt 63
              |||| |||||||||||||||||||
Sbjct: 132561 caaagcagacaaataaattgagtt 132538
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>emb|AL583838.7| Human DNA sequence from clone RP11-536O4 on chromosome 6, complete
             sequence
          Length = 121958

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   tctcatcacctcttcctgca 294
             ||||||||||||||||||||
Sbjct: 89152 tctcatcacctcttcctgca 89133
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 220     gcgccgccgcctcgctcgcc 239
               ||||||||||||||||||||
Sbjct: 3632953 gcgccgccgcctcgctcgcc 3632934
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 175     tactggcgccgtcgccgtggcgct 198
               ||||||||| ||||||||||||||
Sbjct: 4366853 tactggcgctgtcgccgtggcgct 4366830
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>gb|AE009904.1|AE009904 Pyrobaculum aerophilum strain IM2 section 159 of 201 of the complete
             genome
          Length = 11414

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   ggccagcgccgccgcctcgc 234
             ||||||||||||||||||||
Sbjct: 10208 ggccagcgccgccgcctcgc 10227
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 211     gcatggccagcgccgccgcctcgc 234
               ||||||| ||||||||||||||||
Sbjct: 2000702 gcatggcgagcgccgccgcctcgc 2000679
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>gb|S75487.1| adh3a=alcohol dehydrogenase ADH, adh3b=alcohol dehydrogenase  ADH
            [Lycopersicon esculentum=tomatoes, cv. red cherry,
            Genomic, 6282 nt]
          Length = 6282

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 41   aaatcagacaaataaattga 60
            ||||||||||||||||||||
Sbjct: 3698 aaatcagacaaataaattga 3679
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 220    gcgccgccgcctcgctcgcc 239
              ||||||||||||||||||||
Sbjct: 550884 gcgccgccgcctcgctcgcc 550903
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 223     ccgccgcctcgctcgcccgc 242
               ||||||||||||||||||||
Sbjct: 2149402 ccgccgcctcgctcgcccgc 2149421
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 181      cgccgtcgccgtggcgctcc 200
                ||||||||||||||||||||
Sbjct: 19522430 cgccgtcgccgtggcgctcc 19522411
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 219      agcgccgccgcctcgctcgc 238
                ||||||||||||||||||||
Sbjct: 19156666 agcgccgccgcctcgctcgc 19156685
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>gb|AE004812.1| Pseudomonas aeruginosa PAO1, section 373 of 529 of the complete
           genome
          Length = 10049

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 215 ggccagcgccgccgcctcgctcgcccgcagcg 246
           ||||| |||| |||||||||||||| ||||||
Sbjct: 202 ggccaccgcctccgcctcgctcgccagcagcg 233
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>gb|AY007371.1| Burkholderia pseudomallei beta-ketoadipyl CoA thiolase (pcaF) gene,
            complete cds
          Length = 2454

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 220  gcgccgccgcctcgctcgcc 239
            ||||||||||||||||||||
Sbjct: 1073 gcgccgccgcctcgctcgcc 1054
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 211     gcatggccagcgccgccgcc 230
               ||||||||||||||||||||
Sbjct: 1289919 gcatggccagcgccgccgcc 1289938
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>dbj|AP003027.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-25I9, complete
              sequence
          Length = 167067

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 33     atgtgaacaaatcagacaaataaa 56
              ||||||| ||||||||||||||||
Sbjct: 109404 atgtgaagaaatcagacaaataaa 109381
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 175     tactggcgccgtcgccgtggcgct 198
               ||||||||| ||||||||||||||
Sbjct: 4373638 tactggcgctgtcgccgtggcgct 4373615
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 181      cgccgtcgccgtggcgctcc 200
                ||||||||||||||||||||
Sbjct: 19448643 cgccgtcgccgtggcgctcc 19448624
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>emb|AL731759.2|CNS07YPA Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 144596

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   cgccgtcgccgtggcgctcc 200
             ||||||||||||||||||||
Sbjct: 54611 cgccgtcgccgtggcgctcc 54592


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,648,615
Number of Sequences: 3902068
Number of extensions: 2648615
Number of successful extensions: 58613
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57226
Number of HSP's gapped (non-prelim): 1386
length of query: 333
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 311
effective length of database: 17,147,199,772
effective search space: 5332779129092
effective search space used: 5332779129092
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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