ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast40b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_468246.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.40
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
3dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
4dbj|AP004094.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
5dbj|AK104150.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.40
6dbj|AK058513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.40
7gb|AY103547.1| Zea mays PCO101682 mRNA sequence 44 0.40
8gb|AC150410.3| Branchiostoma floridae clone CH302-57E10, complet... 42 1.6
9gb|U41277.1| Caenorhabditis elegans cosmid C06E4, complete sequence 42 1.6
10gb|AC016906.7| Homo sapiens BAC clone RP11-436E24 from 2, comple... 42 1.6
11dbj|AP001791.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 1.6
12ref|XM_415139.1| PREDICTED: Gallus gallus similar to 4930438O03R... 40 6.3
13gb|AC133902.12| Mus musculus chromosome 10, clone RP24-538B17, c... 40 6.3
14gb|AC116503.17| Mus musculus chromosome 9, clone RP24-302M3, com... 40 6.3
15gb|AC091684.4| Homo sapiens BAC clone RP13-581E15 from 7, comple... 40 6.3
16gb|AC103982.10| Homo sapiens chromosome 15, clone RP11-343B18, c... 40 6.3
17gb|AC122273.4| Mus musculus BAC clone RP23-228B2 from 9, complet... 40 6.3
18emb|CR692514.2|CNS0FXAM Tetraodon nigroviridis full-length cDNA 40 6.3
19emb|AL354680.14| Human DNA sequence from clone RP11-536F8 on chr... 40 6.3
20emb|AL139405.11| Human DNA sequence from clone RP11-393E10 on ch... 40 6.3
21gb|AC107031.6| Homo sapiens 12 BAC RP11-607P23 (Roswell Park Can... 40 6.3
22gb|AC084429.5| Mus Musculus Chromosome 2 Clone RP23-291P1, compl... 40 6.3
23gb|AC025561.6| Homo sapiens BAC clone RP11-673E21 from 4, comple... 40 6.3
24dbj|AK081316.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 40 6.3
25gb|AC079828.4|AC079828 Arabidopsis thaliana chromosome 1 BAC F23... 40 6.3
26gb|AC149053.3| Mus musculus BAC clone RP24-502E20 from chromosom... 40 6.3
27gb|AF118762.2|MMIGRP1 Mus musculus islet-specific glucose-6-phos... 40 6.3
28gb|AC006368.2| Homo sapiens BAC clone RP11-252C12 from 2, comple... 40 6.3
29gb|AC067959.5| Homo sapiens BAC clone RP11-79J24 from 2, complet... 40 6.3
30emb|AL929170.16| Mouse DNA sequence from clone RP23-451M16 on ch... 40 6.3
31emb|AL807741.8| Mouse DNA sequence from clone RP23-224B9 on chro... 40 6.3
32emb|AL844585.11| Mouse DNA sequence from clone RP23-339I5 on chr... 40 6.3

>ref|XM_468246.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1797

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 437  gttcttgaggacccactccaccagggtgga 466
            ||||||||| |||||||| |||||||||||
Sbjct: 1788 gttcttgagaacccactcaaccagggtgga 1759



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 437      gttcttgaggacccactccaccagggtgga 466
                ||||||||| |||||||| |||||||||||
Sbjct: 33798171 gttcttgagaacccactcaaccagggtgga 33798200



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>dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0700F06
          Length = 139277

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 437    gttcttgaggacccactccaccagggtgga 466
              ||||||||| |||||||| |||||||||||
Sbjct: 129038 gttcttgagaacccactcaaccagggtgga 129067



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>dbj|AP004094.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1695_H09
          Length = 114721

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 437   gttcttgaggacccactccaccagggtgga 466
             ||||||||| |||||||| |||||||||||
Sbjct: 14749 gttcttgagaacccactcaaccagggtgga 14778



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>dbj|AK104150.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-D05, full
           insert sequence
          Length = 1217

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 437 gttcttgaggacccactccaccagggtgga 466
           ||||||||| |||||||| |||||||||||
Sbjct: 863 gttcttgagaacccactcaaccagggtgga 834



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>dbj|AK058513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-G10, full
           insert sequence
          Length = 1299

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 437 gttcttgaggacccactccaccagggtgga 466
           ||||||||| |||||||| |||||||||||
Sbjct: 945 gttcttgagaacccactcaaccagggtgga 916



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>gb|AY103547.1| Zea mays PCO101682 mRNA sequence
          Length = 1701

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 441  ttgaggacccactccaccagggtgga 466
            ||||| ||||||||||||||||||||
Sbjct: 1344 ttgagaacccactccaccagggtgga 1319



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>gb|AC150410.3| Branchiostoma floridae clone CH302-57E10, complete sequence
          Length = 153095

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 74    cagcagtgttcaaaagaacca 94
             |||||||||||||||||||||
Sbjct: 25252 cagcagtgttcaaaagaacca 25272



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>gb|U41277.1| Caenorhabditis elegans cosmid C06E4, complete sequence
          Length = 31201

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 271   tttcctccatgaaacccttccttat 295
             |||||||| ||||||||||||||||
Sbjct: 17472 tttcctccttgaaacccttccttat 17448



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>gb|AC016906.7| Homo sapiens BAC clone RP11-436E24 from 2, complete sequence
          Length = 183045

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 262    ctgctttattttcctccatga 282
              |||||||||||||||||||||
Sbjct: 176671 ctgctttattttcctccatga 176691



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>dbj|AP001791.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-427G12, complete
             sequence
          Length = 140000

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 272   ttcctccatgaaacccttcct 292
             |||||||||||||||||||||
Sbjct: 92351 ttcctccatgaaacccttcct 92371



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>ref|XM_415139.1| PREDICTED: Gallus gallus similar to 4930438O03Rik protein
            (LOC416846), mRNA
          Length = 1166

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 327  aagcaaataaaaaccattca 346
            ||||||||||||||||||||
Sbjct: 1116 aagcaaataaaaaccattca 1135



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>gb|AC133902.12| Mus musculus chromosome 10, clone RP24-538B17, complete sequence
          Length = 199604

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    ccaaaagcaaataaaaacca 342
              ||||||||||||||||||||
Sbjct: 150698 ccaaaagcaaataaaaacca 150679



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>gb|AC116503.17| Mus musculus chromosome 9, clone RP24-302M3, complete sequence
          Length = 199065

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 325   aaaagcaaataaaaaccatt 344
             ||||||||||||||||||||
Sbjct: 18863 aaaagcaaataaaaaccatt 18844



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>gb|AC091684.4| Homo sapiens BAC clone RP13-581E15 from 7, complete sequence
          Length = 13293

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 397  aatcaggggggaagttcatt 416
            ||||||||||||||||||||
Sbjct: 8751 aatcaggggggaagttcatt 8770



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>gb|AC103982.10| Homo sapiens chromosome 15, clone RP11-343B18, complete sequence
          Length = 197370

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 262   ctgctttattttcctccatg 281
             ||||||||||||||||||||
Sbjct: 84126 ctgctttattttcctccatg 84107



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>gb|AC122273.4| Mus musculus BAC clone RP23-228B2 from 9, complete sequence
          Length = 196627

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 325  aaaagcaaataaaaaccatt 344
            ||||||||||||||||||||
Sbjct: 5952 aaaagcaaataaaaaccatt 5971



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>emb|CR692514.2|CNS0FXAM Tetraodon nigroviridis full-length cDNA
          Length = 665

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 323 ccaaaagcaaataaaaacca 342
           ||||||||||||||||||||
Sbjct: 631 ccaaaagcaaataaaaacca 650



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>emb|AL354680.14| Human DNA sequence from clone RP11-536F8 on chromosome 6p23-24.3
             Contains part of gene KIAA1733 and a CpG island, complete
             sequence
          Length = 194845

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 263   tgctttattttcctccatga 282
             ||||||||||||||||||||
Sbjct: 47147 tgctttattttcctccatga 47128



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>emb|AL139405.11| Human DNA sequence from clone RP11-393E10 on chromosome 10 Contains the
              5' end of a variant of the gene for a novel protein
              (FLJ10210) and the 3' end of the gene for a novel protein
              (MGC11034), complete sequence
          Length = 179829

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 262    ctgctttattttcctccatg 281
              ||||||||||||||||||||
Sbjct: 120394 ctgctttattttcctccatg 120375



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>gb|AC107031.6| Homo sapiens 12 BAC RP11-607P23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 84540

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 262   ctgctttattttcctccatg 281
             ||||||||||||||||||||
Sbjct: 75439 ctgctttattttcctccatg 75420



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>gb|AC084429.5| Mus Musculus Chromosome 2 Clone RP23-291P1, complete sequence
          Length = 181684

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 330    caaataaaaaccattcattc 349
              ||||||||||||||||||||
Sbjct: 156511 caaataaaaaccattcattc 156492



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>gb|AC025561.6| Homo sapiens BAC clone RP11-673E21 from 4, complete sequence
          Length = 154280

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 262    ctgctttattttcctccatg 281
              ||||||||||||||||||||
Sbjct: 116052 ctgctttattttcctccatg 116071



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>dbj|AK081316.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130004C03 product:unclassifiable, full
            insert sequence
          Length = 1788

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 325  aaaagcaaataaaaaccatt 344
            ||||||||||||||||||||
Sbjct: 1316 aaaagcaaataaaaaccatt 1297



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>gb|AC079828.4|AC079828 Arabidopsis thaliana chromosome 1 BAC F23H24 genomic sequence, complete
             sequence
          Length = 45337

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 324   caaaagcaaataaaaaccat 343
             ||||||||||||||||||||
Sbjct: 16124 caaaagcaaataaaaaccat 16143



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>gb|AC149053.3| Mus musculus BAC clone RP24-502E20 from chromosome 7, complete sequence
          Length = 221785

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    tcctccatgaaacccttcct 292
              ||||||||||||||||||||
Sbjct: 113702 tcctccatgaaacccttcct 113721



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>gb|AF118762.2|MMIGRP1 Mus musculus islet-specific glucose-6-phosphatase catalytic
           subunit-related protein (IGRP) gene, promoter region and
           exon 1
          Length = 1596

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 330 caaataaaaaccattcattc 349
           ||||||||||||||||||||
Sbjct: 904 caaataaaaaccattcattc 923



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>gb|AC006368.2| Homo sapiens BAC clone RP11-252C12 from 2, complete sequence
          Length = 171089

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 253    aatgacatgctgctttattt 272
              ||||||||||||||||||||
Sbjct: 152965 aatgacatgctgctttattt 152984



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>gb|AC067959.5| Homo sapiens BAC clone RP11-79J24 from 2, complete sequence
          Length = 59030

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 262   ctgctttattttcctccatg 281
             ||||||||||||||||||||
Sbjct: 28455 ctgctttattttcctccatg 28436



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>emb|AL929170.16| Mouse DNA sequence from clone RP23-451M16 on chromosome 2, complete
             sequence
          Length = 164121

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 330   caaataaaaaccattcattc 349
             ||||||||||||||||||||
Sbjct: 15268 caaataaaaaccattcattc 15287



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>emb|AL807741.8| Mouse DNA sequence from clone RP23-224B9 on chromosome 2, complete
             sequence
          Length = 165777

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 325   aaaagcaaataaaaaccatt 344
             ||||||||||||||||||||
Sbjct: 29299 aaaagcaaataaaaaccatt 29280



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>emb|AL844585.11| Mouse DNA sequence from clone RP23-339I5 on chromosome 4, complete
             sequence
          Length = 141401

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 161   acacaacagaatatgacaacacac 184
             |||||||| |||||||||||||||
Sbjct: 77229 acacaacacaatatgacaacacac 77252


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,050,181
Number of Sequences: 3902068
Number of extensions: 4050181
Number of successful extensions: 79956
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79885
Number of HSP's gapped (non-prelim): 71
length of query: 466
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 444
effective length of database: 17,147,199,772
effective search space: 7613356698768
effective search space used: 7613356698768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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