| Clone Name | rbast40b11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468246.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1797 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 437 gttcttgaggacccactccaccagggtgga 466 ||||||||| |||||||| ||||||||||| Sbjct: 1788 gttcttgagaacccactcaaccagggtgga 1759
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 437 gttcttgaggacccactccaccagggtgga 466 ||||||||| |||||||| ||||||||||| Sbjct: 33798171 gttcttgagaacccactcaaccagggtgga 33798200
>dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0700F06 Length = 139277 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 437 gttcttgaggacccactccaccagggtgga 466 ||||||||| |||||||| ||||||||||| Sbjct: 129038 gttcttgagaacccactcaaccagggtgga 129067
>dbj|AP004094.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1695_H09 Length = 114721 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 437 gttcttgaggacccactccaccagggtgga 466 ||||||||| |||||||| ||||||||||| Sbjct: 14749 gttcttgagaacccactcaaccagggtgga 14778
>dbj|AK104150.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-D05, full insert sequence Length = 1217 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 437 gttcttgaggacccactccaccagggtgga 466 ||||||||| |||||||| ||||||||||| Sbjct: 863 gttcttgagaacccactcaaccagggtgga 834
>dbj|AK058513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-G10, full insert sequence Length = 1299 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 437 gttcttgaggacccactccaccagggtgga 466 ||||||||| |||||||| ||||||||||| Sbjct: 945 gttcttgagaacccactcaaccagggtgga 916
>gb|AY103547.1| Zea mays PCO101682 mRNA sequence Length = 1701 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 441 ttgaggacccactccaccagggtgga 466 ||||| |||||||||||||||||||| Sbjct: 1344 ttgagaacccactccaccagggtgga 1319
>gb|AC150410.3| Branchiostoma floridae clone CH302-57E10, complete sequence Length = 153095 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 cagcagtgttcaaaagaacca 94 ||||||||||||||||||||| Sbjct: 25252 cagcagtgttcaaaagaacca 25272
>gb|U41277.1| Caenorhabditis elegans cosmid C06E4, complete sequence Length = 31201 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 271 tttcctccatgaaacccttccttat 295 |||||||| |||||||||||||||| Sbjct: 17472 tttcctccttgaaacccttccttat 17448
>gb|AC016906.7| Homo sapiens BAC clone RP11-436E24 from 2, complete sequence Length = 183045 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 ctgctttattttcctccatga 282 ||||||||||||||||||||| Sbjct: 176671 ctgctttattttcctccatga 176691
>dbj|AP001791.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-427G12, complete sequence Length = 140000 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 272 ttcctccatgaaacccttcct 292 ||||||||||||||||||||| Sbjct: 92351 ttcctccatgaaacccttcct 92371
>ref|XM_415139.1| PREDICTED: Gallus gallus similar to 4930438O03Rik protein (LOC416846), mRNA Length = 1166 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 aagcaaataaaaaccattca 346 |||||||||||||||||||| Sbjct: 1116 aagcaaataaaaaccattca 1135
>gb|AC133902.12| Mus musculus chromosome 10, clone RP24-538B17, complete sequence Length = 199604 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 ccaaaagcaaataaaaacca 342 |||||||||||||||||||| Sbjct: 150698 ccaaaagcaaataaaaacca 150679
>gb|AC116503.17| Mus musculus chromosome 9, clone RP24-302M3, complete sequence Length = 199065 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 aaaagcaaataaaaaccatt 344 |||||||||||||||||||| Sbjct: 18863 aaaagcaaataaaaaccatt 18844
>gb|AC091684.4| Homo sapiens BAC clone RP13-581E15 from 7, complete sequence Length = 13293 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 aatcaggggggaagttcatt 416 |||||||||||||||||||| Sbjct: 8751 aatcaggggggaagttcatt 8770
>gb|AC103982.10| Homo sapiens chromosome 15, clone RP11-343B18, complete sequence Length = 197370 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctgctttattttcctccatg 281 |||||||||||||||||||| Sbjct: 84126 ctgctttattttcctccatg 84107
>gb|AC122273.4| Mus musculus BAC clone RP23-228B2 from 9, complete sequence Length = 196627 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 aaaagcaaataaaaaccatt 344 |||||||||||||||||||| Sbjct: 5952 aaaagcaaataaaaaccatt 5971
>emb|CR692514.2|CNS0FXAM Tetraodon nigroviridis full-length cDNA Length = 665 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 ccaaaagcaaataaaaacca 342 |||||||||||||||||||| Sbjct: 631 ccaaaagcaaataaaaacca 650
>emb|AL354680.14| Human DNA sequence from clone RP11-536F8 on chromosome 6p23-24.3 Contains part of gene KIAA1733 and a CpG island, complete sequence Length = 194845 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 tgctttattttcctccatga 282 |||||||||||||||||||| Sbjct: 47147 tgctttattttcctccatga 47128
>emb|AL139405.11| Human DNA sequence from clone RP11-393E10 on chromosome 10 Contains the 5' end of a variant of the gene for a novel protein (FLJ10210) and the 3' end of the gene for a novel protein (MGC11034), complete sequence Length = 179829 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctgctttattttcctccatg 281 |||||||||||||||||||| Sbjct: 120394 ctgctttattttcctccatg 120375
>gb|AC107031.6| Homo sapiens 12 BAC RP11-607P23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 84540 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctgctttattttcctccatg 281 |||||||||||||||||||| Sbjct: 75439 ctgctttattttcctccatg 75420
>gb|AC084429.5| Mus Musculus Chromosome 2 Clone RP23-291P1, complete sequence Length = 181684 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 caaataaaaaccattcattc 349 |||||||||||||||||||| Sbjct: 156511 caaataaaaaccattcattc 156492
>gb|AC025561.6| Homo sapiens BAC clone RP11-673E21 from 4, complete sequence Length = 154280 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 ctgctttattttcctccatg 281 |||||||||||||||||||| Sbjct: 116052 ctgctttattttcctccatg 116071
>dbj|AK081316.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130004C03 product:unclassifiable, full insert sequence Length = 1788 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 aaaagcaaataaaaaccatt 344 |||||||||||||||||||| Sbjct: 1316 aaaagcaaataaaaaccatt 1297
>gb|AC079828.4|AC079828 Arabidopsis thaliana chromosome 1 BAC F23H24 genomic sequence, complete sequence Length = 45337 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 caaaagcaaataaaaaccat 343 |||||||||||||||||||| Sbjct: 16124 caaaagcaaataaaaaccat 16143
>gb|AC149053.3| Mus musculus BAC clone RP24-502E20 from chromosome 7, complete sequence Length = 221785 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 tcctccatgaaacccttcct 292 |||||||||||||||||||| Sbjct: 113702 tcctccatgaaacccttcct 113721
>gb|AF118762.2|MMIGRP1 Mus musculus islet-specific glucose-6-phosphatase catalytic subunit-related protein (IGRP) gene, promoter region and exon 1 Length = 1596 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 caaataaaaaccattcattc 349 |||||||||||||||||||| Sbjct: 904 caaataaaaaccattcattc 923
>gb|AC006368.2| Homo sapiens BAC clone RP11-252C12 from 2, complete sequence Length = 171089 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 aatgacatgctgctttattt 272 |||||||||||||||||||| Sbjct: 152965 aatgacatgctgctttattt 152984
>gb|AC067959.5| Homo sapiens BAC clone RP11-79J24 from 2, complete sequence Length = 59030 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctgctttattttcctccatg 281 |||||||||||||||||||| Sbjct: 28455 ctgctttattttcctccatg 28436
>emb|AL929170.16| Mouse DNA sequence from clone RP23-451M16 on chromosome 2, complete sequence Length = 164121 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 caaataaaaaccattcattc 349 |||||||||||||||||||| Sbjct: 15268 caaataaaaaccattcattc 15287
>emb|AL807741.8| Mouse DNA sequence from clone RP23-224B9 on chromosome 2, complete sequence Length = 165777 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 aaaagcaaataaaaaccatt 344 |||||||||||||||||||| Sbjct: 29299 aaaagcaaataaaaaccatt 29280
>emb|AL844585.11| Mouse DNA sequence from clone RP23-339I5 on chromosome 4, complete sequence Length = 141401 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 161 acacaacagaatatgacaacacac 184 |||||||| ||||||||||||||| Sbjct: 77229 acacaacacaatatgacaacacac 77252 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,050,181 Number of Sequences: 3902068 Number of extensions: 4050181 Number of successful extensions: 79956 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79885 Number of HSP's gapped (non-prelim): 71 length of query: 466 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 444 effective length of database: 17,147,199,772 effective search space: 7613356698768 effective search space used: 7613356698768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)