ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast39h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IML3_YEAST (P38265) Central kinetochore subunit IML3 (Increased ... 30 2.0
2TAF1_DROME (P51123) Transcription initiation factor TFIID subuni... 29 3.4
3LIPP_HUMAN (P16233) Pancreatic triacylglycerol lipase precursor ... 28 4.4
4RYBP_BRARE (Q5EG55) RING1 and YY1-binding protein (Death effecto... 28 7.5
5COBL4_ARATH (Q9LFW3) COBRA-like protein 4 precursor 28 7.5
6ATL2M_ARATH (O82353) RING-H2 finger protein ATL2M 28 7.5
7NOS_DROME (Q27571) Nitric-oxide synthase (EC 1.14.13.39) (dNOS) 27 9.8
8STK36_HUMAN (Q9NRP7) Serine/threonine-protein kinase 36 (EC 2.7.... 27 9.8
9LIPP_PIG (P00591) Pancreatic triacylglycerol lipase (EC 3.1.1.3)... 27 9.8

>IML3_YEAST (P38265) Central kinetochore subunit IML3 (Increased minichromosome|
           loss protein 3) (Minichromosome maintenance protein 19)
          Length = 245

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -2

Query: 246 ESHPGLCCSY-NYFHADLCCPCPYFNQRRVISVARIPLSLPILLGYTVVLCRLRLSSVIS 70
           ES  GL   Y N  H       PY      ++V R+PL+  IL G+T ++    ++S  S
Sbjct: 168 ESCEGLALGYGNTMHPYNDAIVPYIYNETGMAVERLPLTSVILAGHTKIMRESIVTSTRS 227

Query: 69  CREHV 55
            R  V
Sbjct: 228 LRNRV 232



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>TAF1_DROME (P51123) Transcription initiation factor TFIID subunit 1 (EC|
            2.7.11.1) (Transcription initiation factor TFIID 230 kDa
            subunit) (TAFII-230) (TAFII250) (TBP-associated factor
            230 kDa) (p230)
          Length = 2129

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 312  NEDPGFAEGGRASRP*QAWLFTESHPGLCCSYNYFHADL 196
            N+D  F  G RAS P   ++  E H G   S N  H  +
Sbjct: 1727 NDDYNFDRGSRASSPGDDYIDVEGHGGHASSSNSIHRSM 1765



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>LIPP_HUMAN (P16233) Pancreatic triacylglycerol lipase precursor (EC 3.1.1.3)|
           (Pancreatic lipase) (PL)
          Length = 465

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 228 CCSYNYFHADLCCPCP 181
           C SYN F A+ C PCP
Sbjct: 302 CASYNVFTANKCFPCP 317



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>RYBP_BRARE (Q5EG55) RING1 and YY1-binding protein (Death effector|
           domain-associated factor) (DED-associated factor)
          Length = 257

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 20/77 (25%), Positives = 31/77 (40%)
 Frame = +1

Query: 70  RNDARQSQPTENNSVTQENG*TQGDSSN*NHPSLVKVRARTTQVSXXXXXXXXXXRMALC 249
           ++D  QS P+E NS+      T+  +S+ + P L  +   T Q                 
Sbjct: 145 KSDIHQSPPSERNSIQSGKSTTKTKNSHNSRPKLKNIDRSTAQQLAITVGNVTVIITDFK 204

Query: 250 EKPGLSWPASSTSFSKS 300
           EK   S  +SST  S +
Sbjct: 205 EKTRTSSTSSSTVTSSA 221



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>COBL4_ARATH (Q9LFW3) COBRA-like protein 4 precursor|
          Length = 431

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 240 HPGLCCSYNYFHADLCCPCP 181
           HP  C S++ F+ D   PCP
Sbjct: 214 HPSCCVSFSSFYNDTITPCP 233



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>ATL2M_ARATH (O82353) RING-H2 finger protein ATL2M|
          Length = 214

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -2

Query: 135 SLPILLGYTVVLCRLRLSSVISCREHV*AKL*VQFSGDK 19
           S+ I LG+ V+L  + LSS I CR+       V+ +GD+
Sbjct: 38  SIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDR 76



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>NOS_DROME (Q27571) Nitric-oxide synthase (EC 1.14.13.39) (dNOS)|
          Length = 1349

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 16  KLITTKLNLQFCSNMFPARNDARQSQPTENNSVTQENG*TQGD 144
           K  T K NL+    +FP R DA+      NN +    G  Q D
Sbjct: 360 KYATNKGNLRSAITIFPQRTDAKHDYRIWNNQLISYAGYKQAD 402



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>STK36_HUMAN (Q9NRP7) Serine/threonine-protein kinase 36 (EC 2.7.11.1) (Fused|
           homolog)
          Length = 1315

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 95  LQRTTV*PKRMGKLKGILATEITRRWLK*GQGQHRSA 205
           L R    P+    L GILA+E+   W K G G+  SA
Sbjct: 341 LPRLGATPQESSLLAGILASELKSSWAKSGTGEVPSA 377



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>LIPP_PIG (P00591) Pancreatic triacylglycerol lipase (EC 3.1.1.3) (Pancreatic|
           lipase) (PL)
          Length = 450

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 228 CCSYNYFHADLCCPCP 181
           C SYN F A+ C PCP
Sbjct: 286 CDSYNVFTANKCFPCP 301


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,417,605
Number of Sequences: 219361
Number of extensions: 767755
Number of successful extensions: 1498
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1498
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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