ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast39f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1POL1_BRAV (Q8V5E0) RNA1 polyprotein (P1) [Contains: X1 protein; ... 30 1.8
2ALG10_YEAST (P50076) Alpha-1,2 glucosyltransferase ALG10 (EC 2.4... 29 3.1

>POL1_BRAV (Q8V5E0) RNA1 polyprotein (P1) [Contains: X1 protein; X2 protein;|
            Putative ATP-dependent helicase (EC 3.6.1.-) (NTP-binding
            protein) (NTB) (Membrane-binding protein); Viral
            genome-linked protein (VPg); Picornain 3C-like protease
            (EC 3.4.22.-) (
          Length = 2094

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 23   LIHTVYVPFSSVSIIYIENAQQHSLPQPYTHPY 121
            L H V VP S     Y E   + +LP+PY  P+
Sbjct: 2056 LYHDVSVPGSDALYFYFEQRARRALPEPYIPPH 2088



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>ALG10_YEAST (P50076) Alpha-1,2 glucosyltransferase ALG10 (EC 2.4.1.-)|
           (Alpha-2-glucosyltransferase ALG10)
           (Dolichyl-phosphoglucose-dependent glucosyltransferase
           ALG10) (Asparagine-linked glycosylation protein 10)
          Length = 525

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 12  VINY*FTQCMFHFPLFR*FTLKTPNSIRFHNLTP 113
           +I Y F   ++HF  F    +  PN + FH +TP
Sbjct: 376 LIKYFFMTPIYHFSTFAYLEVMRPNQLTFHPITP 409


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,998,513
Number of Sequences: 219361
Number of extensions: 323647
Number of successful extensions: 872
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 80,573,946
effective HSP length: 24
effective length of database: 75,309,282
effective search space used: 1807422768
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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