ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbast39f05 |
|---|---|
| Clone Library Name | barley_pub |
>STAD_CARTI (P22243) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 396 Score = 56.6 bits (135), Expect = 2e-08 Identities = 27/43 (62%), Positives = 32/43 (74%) Frame = -1 Query: 317 RRAQEYVCGLPPKIRRMEELAHQRAARSELRPARFSWIFDRHV 189 R+AQ+YVCGLPP+IRR+EE A RA + P FSWIFDR V Sbjct: 354 RKAQDYVCGLPPRIRRLEERAQGRAKEGPVVP--FSWIFDRQV 394
>STAD_SPIOL (P28645) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 399 Score = 54.7 bits (130), Expect = 6e-08 Identities = 25/43 (58%), Positives = 33/43 (76%) Frame = -1 Query: 317 RRAQEYVCGLPPKIRRMEELAHQRAARSELRPARFSWIFDRHV 189 ++AQ+YVC LPP+IRR+EE A +RA ++ P FSWIFDR V Sbjct: 357 QKAQDYVCSLPPRIRRLEERARERAKQAPSMP--FSWIFDRQV 397
>STAD_RICCO (P22337) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) (Delta(9) stearoyl-acyl carrier protein desaturase) Length = 396 Score = 52.4 bits (124), Expect = 3e-07 Identities = 25/43 (58%), Positives = 31/43 (72%) Frame = -1 Query: 317 RRAQEYVCGLPPKIRRMEELAHQRAARSELRPARFSWIFDRHV 189 ++AQ+YVC LPP+IRR+EE A RA + P FSWIFDR V Sbjct: 354 QKAQDYVCRLPPRIRRLEERAQGRAKEAPTMP--FSWIFDRQV 394
>STAD_SOYBN (Q42807) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 411 Score = 52.0 bits (123), Expect = 4e-07 Identities = 24/41 (58%), Positives = 29/41 (70%) Frame = -1 Query: 317 RRAQEYVCGLPPKIRRMEELAHQRAARSELRPARFSWIFDR 195 R+AQEY+CGLPP+IRR+EE A R S +FSWI DR Sbjct: 349 RKAQEYICGLPPRIRRLEERAQARVKESS--TLKFSWIHDR 387
>STAD_OLEEU (Q43593) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 390 Score = 51.2 bits (121), Expect = 6e-07 Identities = 23/43 (53%), Positives = 30/43 (69%) Frame = -1 Query: 317 RRAQEYVCGLPPKIRRMEELAHQRAARSELRPARFSWIFDRHV 189 R+AQ+YVC LPP+IRR+EE A R ++ P FSWIF R + Sbjct: 348 RKAQDYVCTLPPRIRRLEERAQSRVKKASATP--FSWIFGREI 388
>STAD_HELAN (Q96456) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 396 Score = 50.8 bits (120), Expect = 8e-07 Identities = 26/43 (60%), Positives = 30/43 (69%) Frame = -1 Query: 317 RRAQEYVCGLPPKIRRMEELAHQRAARSELRPARFSWIFDRHV 189 R+AQ+YVCGL P+IRR+EE RA S P FSWIFDR V Sbjct: 354 RKAQDYVCGLAPRIRRLEERNSARAKESVNVP--FSWIFDREV 394
>STAD_SOLTU (P46253) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 393 Score = 49.7 bits (117), Expect = 2e-06 Identities = 23/43 (53%), Positives = 31/43 (72%) Frame = -1 Query: 317 RRAQEYVCGLPPKIRRMEELAHQRAARSELRPARFSWIFDRHV 189 RRAQ+YVCGL P+IR++EE A RA ++ P FSWIF + + Sbjct: 351 RRAQDYVCGLAPRIRKLEERAQARAKHAKSVP--FSWIFGKEI 391
>STAD_ORYSA (Q40731) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 390 Score = 48.5 bits (114), Expect = 4e-06 Identities = 22/45 (48%), Positives = 33/45 (73%) Frame = -1 Query: 317 RRAQEYVCGLPPKIRRMEELAHQRAARSELRPARFSWIFDRHVMV 183 RRAQ++VC L P+IRR++E A RA ++ + P FSW++DR V + Sbjct: 348 RRAQDFVCTLAPRIRRLDERAQARAKQAPVIP--FSWVYDRKVQL 390
>STADS_BRANA (Q01771) Acyl-[acyl-carrier-protein] desaturase, seed specific,| chloroplast precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 399 Score = 48.1 bits (113), Expect = 5e-06 Identities = 23/44 (52%), Positives = 30/44 (68%) Frame = -1 Query: 314 RAQEYVCGLPPKIRRMEELAHQRAARSELRPARFSWIFDRHVMV 183 +AQEY+CGL P+IRR++E A RA + P FSWI DR V + Sbjct: 358 KAQEYLCGLTPRIRRLDERAQARAKKGPKIP--FSWIHDREVQL 399
>STAD_BRANA (P29108) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 398 Score = 48.1 bits (113), Expect = 5e-06 Identities = 23/44 (52%), Positives = 30/44 (68%) Frame = -1 Query: 314 RAQEYVCGLPPKIRRMEELAHQRAARSELRPARFSWIFDRHVMV 183 +AQEY+CGL P+IRR++E A RA + P FSWI DR V + Sbjct: 357 KAQEYLCGLTPRIRRLDERAQARAKKGPKVP--FSWIHDREVQL 398
>STAD_CUCSA (P32061) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 396 Score = 47.8 bits (112), Expect = 7e-06 Identities = 23/43 (53%), Positives = 29/43 (67%) Frame = -1 Query: 317 RRAQEYVCGLPPKIRRMEELAHQRAARSELRPARFSWIFDRHV 189 ++AQ+YVC LP +IR++EE A RA P FSWIFDR V Sbjct: 354 QKAQDYVCALPARIRKLEERAQGRAKEGPTIP--FSWIFDRQV 394
>STAD_GOSHI (Q42770) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 397 Score = 47.8 bits (112), Expect = 7e-06 Identities = 23/43 (53%), Positives = 30/43 (69%) Frame = -1 Query: 317 RRAQEYVCGLPPKIRRMEELAHQRAARSELRPARFSWIFDRHV 189 R+AQ+Y+C LP +IRR+EE A Q A+ + FSWIFDR V Sbjct: 354 RKAQDYLCSLPSRIRRLEERA-QEKAQGSTPVSPFSWIFDREV 395
>STAD_CORSA (P32063) Omega-12 acyl-[acyl-carrier-protein] desaturase,| chloroplast precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 385 Score = 47.8 bits (112), Expect = 7e-06 Identities = 22/45 (48%), Positives = 31/45 (68%) Frame = -1 Query: 317 RRAQEYVCGLPPKIRRMEELAHQRAARSELRPARFSWIFDRHVMV 183 R+AQEYVC L KIRR+EE + ++ L P FSWIF+R +++ Sbjct: 342 RKAQEYVCSLAAKIRRVEEKVQGKEKKAVL-PVAFSWIFNRQIII 385
>STAD_LINUS (P32062) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 396 Score = 44.7 bits (104), Expect = 6e-05 Identities = 20/44 (45%), Positives = 32/44 (72%) Frame = -1 Query: 314 RAQEYVCGLPPKIRRMEELAHQRAARSELRPARFSWIFDRHVMV 183 +AQ++VCGLP +IR++EE A RA ++ + FSWIF R +++ Sbjct: 354 KAQDFVCGLPARIRKLEERAAGRAKQTS-KSVPFSWIFSRELVL 396
>STAD_SOLCO (Q41319) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 393 Score = 44.7 bits (104), Expect = 6e-05 Identities = 19/42 (45%), Positives = 29/42 (69%) Frame = -1 Query: 314 RAQEYVCGLPPKIRRMEELAHQRAARSELRPARFSWIFDRHV 189 +A++YVCGL P+IR++EE A RA + P FSW+F + + Sbjct: 352 KARDYVCGLAPRIRKLEERAQARA--KQKAPVPFSWVFGKDI 391
>STAD_ELAGV (O24428) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 393 Score = 43.9 bits (102), Expect = 1e-04 Identities = 21/45 (46%), Positives = 31/45 (68%) Frame = -1 Query: 317 RRAQEYVCGLPPKIRRMEELAHQRAARSELRPARFSWIFDRHVMV 183 +RAQ++VC L P+IRR+EE A +RA ++ P SWI+ R V + Sbjct: 351 KRAQDFVCTLAPRIRRIEERAQERAKQAPRIPC--SWIYGREVQL 393
>STAD_SIMCH (Q01753) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 398 Score = 40.0 bits (92), Expect = 0.001 Identities = 19/44 (43%), Positives = 29/44 (65%) Frame = -1 Query: 314 RAQEYVCGLPPKIRRMEELAHQRAARSELRPARFSWIFDRHVMV 183 +AQ++VCGL P+IR++ E A + L P FSWIF++ + V Sbjct: 357 KAQDFVCGLAPRIRKLGERAQSLSKPVSLVP--FSWIFNKELKV 398
>NFKB2_HUMAN (Q00653) Nuclear factor NF-kappa-B p100 subunit (DNA-binding factor| KBF2) (H2TF1) (Lymphocyte translocation chromosome 10) (Oncogene Lyt-10) (Lyt10) [Contains: Nuclear factor NF-kappa-B p52 subunit] Length = 899 Score = 29.6 bits (65), Expect = 2.0 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 6/39 (15%) Frame = +3 Query: 216 AGRPELA-----TGRPLVCQFLHPPDL-GRQPAHVLLRA 314 AG PEL +G P V Q LH PD G P H+ +RA Sbjct: 572 AGAPELLRALLQSGAPAVPQLLHMPDFEGLYPVHLAVRA 610
>K2C8_XENLA (P08776) Keratin, type II cytoskeletal 8 (Cytokeratin-8) (CK-8)| (Keratin-8) (K8) Length = 502 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/33 (42%), Positives = 23/33 (69%) Frame = -2 Query: 283 PRSGGWRNWHTRGRPVASSGRPASVGYSIGTSW 185 PRSGG+ ++ G P+AS R +S +S+G+S+ Sbjct: 17 PRSGGFSSFSYSGAPMAS--RASSASFSLGSSY 47
>TYSY_NOCFA (Q5YPL7) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)| Length = 266 Score = 29.6 bits (65), Expect = 2.0 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%) Frame = -1 Query: 317 RRAQEYVCGLPPKIRRMEELAHQRAARSELRPARFSW------IFDRHV 189 +R+ + G+P I L H A ++EL P F W I+D HV Sbjct: 168 QRSADLFLGVPFNIASYALLTHMVAQQTELEPGEFIWTGGDCHIYDNHV 216
>NUDEL_DROME (P98159) Serine protease nudel precursor (EC 3.4.21.-)| Length = 2616 Score = 29.3 bits (64), Expect = 2.6 Identities = 10/22 (45%), Positives = 17/22 (77%) Frame = -1 Query: 257 AHQRAARSELRPARFSWIFDRH 192 A ++ AR++++P+R SWI D H Sbjct: 247 ATEKPARTKIKPSRISWIIDGH 268
>VCIP1_MOUSE (Q8CDG3) Deubiquitinating protein VCIP135 (EC 3.4.22.-)| (Valosin-containing protein p97/p47 complex-interacting protein p135) (Valosin-containing protein p97/p47 complex-interacting protein 1) Length = 1220 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +1 Query: 196 LSNIQLKRAGLSSLRAALWCASSSILRILGGSPHTY 303 + ++ L GLS+L A WC SS+ R+ G Y Sbjct: 521 VKDVLLPDYGLSNLTACNWCHGSSVRRVRGDGSIVY 556
>EX7L_XANCP (Q8P8D9) Probable exodeoxyribonuclease VII large subunit (EC| 3.1.11.6) (Exonuclease VII large subunit) Length = 446 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = +3 Query: 159 GIQAHSSAHHDVPIEYPTEAGRPELATGRPLVCQFLH 269 G+Q+HS H P++ A P+ A R L LH Sbjct: 346 GVQSHSPQRHLAPLQQRLRAAHPQAAMQRRLQQDHLH 382
>GP42_RAT (P23505) Cell surface glycoprotein gp42 precursor| Length = 233 Score = 28.1 bits (61), Expect = 5.8 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -2 Query: 247 GRPVASSGRPASVGYSIGTSWWAEEWAC 164 G P+A SGR AS+ S+ W + ++C Sbjct: 157 GEPLAPSGRAASLLISVKAEWSGKNYSC 184
>EUTC_RHOER (Q59782) Ethanolamine ammonia-lyase light chain (EC 4.3.1.7)| (Ethanolamine ammonia-lyase small subunit) Length = 257 Score = 28.1 bits (61), Expect = 5.8 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 11/54 (20%) Frame = +3 Query: 168 AHSSAHHDV--PIEYPTEAGRPE-LATGRPLVC--------QFLHPPDLGRQPA 296 AH++A V P++ T A R + + G P+V ++L PDLGRQPA Sbjct: 43 AHAAARDAVHEPLDSETLASRVDGVGIGAPVVVASSVSTRSEYLRRPDLGRQPA 96
>CTK1_RABIT (P49659) Voltage independent pH-sensitive potassium channel| (RACTK1) Length = 284 Score = 27.7 bits (60), Expect = 7.6 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -2 Query: 307 RSTCAGCRPRSGGWRNW 257 R + AG RPR GWR W Sbjct: 59 RKSSAGNRPRLSGWRRW 75
>MERA_SERMA (P08662) Mercuric reductase (EC 1.16.1.1) (Hg(II) reductase)| (Fragments) Length = 460 Score = 27.7 bits (60), Expect = 7.6 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -1 Query: 287 PPKIRRMEELAHQRAARSELRPARFSWIFDRHVMVG*RMG 168 PP I R LA Q+A ELR A++ I D + + R G Sbjct: 170 PPTILRERLLAQQQARVEELRHAKYEGILDGNSAITVRHG 209
>VCIP1_RAT (Q8CF97) Deubiquitinating protein VCIP135 (EC 3.4.22.-)| (Valosin-containing protein p97/p47 complex-interacting protein p135) (Valosin-containing protein p97/p47 complex-interacting protein 1) Length = 1221 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = +1 Query: 196 LSNIQLKRAGLSSLRAALWCASSSILRILGGSPHTY 303 + ++ L GLS+L A WC +S+ R+ G Y Sbjct: 521 VKDVLLPDYGLSNLTACNWCHGTSVRRVRGDGSIVY 556 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,833,610 Number of Sequences: 219361 Number of extensions: 865457 Number of successful extensions: 2204 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2154 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2196 length of database: 80,573,946 effective HSP length: 81 effective length of database: 62,805,705 effective search space used: 1507336920 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
