ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbast39f03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY491681.1| Triticum monococcum DV92 BAC 109N23, complete sequence Length = 101101 Score = 56.0 bits (28), Expect = 7e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 1 gaactaaaacacatctagatacattcatttct 32 ||||||||| |||||||||||||||||||||| Sbjct: 88802 gaactaaaatacatctagatacattcatttct 88833
>gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (Lrr19), TAK19-1 (Tak19-1), and LRK19 (Lrk19) genes, complete cds Length = 35872 Score = 54.0 bits (27), Expect = 3e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 5 taaaacacatctagatacattcatttctccaaaaagtatttctggac 51 ||||| ||||||||||| |||||||||||| | ||||||||| |||| Sbjct: 33680 taaaatacatctagatagattcatttctccgacaagtatttccggac 33634
>gb|BT009606.1| Triticum aestivum clone wre1n.pk0091.d5:fis, full insert mRNA sequence Length = 1469 Score = 48.1 bits (24), Expect = 0.017 Identities = 27/28 (96%) Strand = Plus / Minus Query: 5 taaaacacatctagatacattcatttct 32 ||||| |||||||||||||||||||||| Sbjct: 1260 taaaatacatctagatacattcatttct 1233
>gb|AY235469.1| Triticum aestivum nonfunctional FCA-like protein (Fca-2C9) gene, exons 8 through 15, partial sequence Length = 3511 Score = 46.1 bits (23), Expect = 0.067 Identities = 44/51 (86%) Strand = Plus / Plus Query: 1 gaactaaaacacatctagatacattcatttctccaaaaagtatttctggac 51 ||||||||| |||||||||||||| |||| | || | ||||||||| |||| Sbjct: 729 gaactaaaatacatctagatacatccattcccccgacaagtatttccggac 779
>gb|AY235468.1| Triticum aestivum FCA-like protein (Fca-2A3) gene, exons 8 through 15, partial cds Length = 3601 Score = 46.1 bits (23), Expect = 0.067 Identities = 44/51 (86%) Strand = Plus / Plus Query: 1 gaactaaaacacatctagatacattcatttctccaaaaagtatttctggac 51 ||||||||| |||||||||||||| |||| | || | ||||||||| |||| Sbjct: 771 gaactaaaatacatctagatacatccattcccccgacaagtatttccggac 821
>gb|AY235467.1| Triticum aestivum FCA-like protein (Fca-1C5) gene, exons 8 through 15, partial cds Length = 3508 Score = 46.1 bits (23), Expect = 0.067 Identities = 44/51 (86%) Strand = Plus / Plus Query: 1 gaactaaaacacatctagatacattcatttctccaaaaagtatttctggac 51 ||||||||| |||||||||||||| |||| | || | ||||||||| |||| Sbjct: 712 gaactaaaatacatctagatacatccattcccccgacaagtatttccggac 762
>gb|AY235466.1| Triticum aestivum FCA-like protein (Fca-1F10) gene, exons 8 through 15, partial cds Length = 3502 Score = 46.1 bits (23), Expect = 0.067 Identities = 44/51 (86%) Strand = Plus / Plus Query: 1 gaactaaaacacatctagatacattcatttctccaaaaagtatttctggac 51 ||||||||| |||||||||||||| |||| | || | ||||||||| |||| Sbjct: 716 gaactaaaatacatctagatacatccattcccccgacaagtatttccggac 766
>gb|AY235464.1| Triticum aestivum FCA-like protein (Fca-5A3) gene, exons 8 through 15, partial cds Length = 3593 Score = 46.1 bits (23), Expect = 0.067 Identities = 44/51 (86%) Strand = Plus / Plus Query: 1 gaactaaaacacatctagatacattcatttctccaaaaagtatttctggac 51 ||||||||| |||||||||||||| |||| | || | ||||||||| |||| Sbjct: 774 gaactaaaatacatctagatacatccattcccccgacaagtatttccggac 824
>gb|AY235463.1| Triticum aestivum nonfunctional FCA-like protein (Fca-2E11) gene, exons 8 through 15, partial sequence Length = 3592 Score = 46.1 bits (23), Expect = 0.067 Identities = 44/51 (86%) Strand = Plus / Plus Query: 1 gaactaaaacacatctagatacattcatttctccaaaaagtatttctggac 51 ||||||||| |||||||||||||| |||| | || | ||||||||| |||| Sbjct: 769 gaactaaaatacatctagatacatccattcccccgacaagtatttccggac 819
>gb|AY235462.1| Triticum aestivum FCA-like protein (Fca-4C5) gene, exons 8 through 15, partial cds Length = 3585 Score = 46.1 bits (23), Expect = 0.067 Identities = 44/51 (86%) Strand = Plus / Plus Query: 1 gaactaaaacacatctagatacattcatttctccaaaaagtatttctggac 51 ||||||||| |||||||||||||| |||| | || | ||||||||| |||| Sbjct: 757 gaactaaaatacatctagatacatccattcccccgacaagtatttccggac 807
>gb|AY235448.1| Triticum aestivum FCA-like protein (Fca-2G10) gene, exons 8 through 15, partial cds Length = 3610 Score = 46.1 bits (23), Expect = 0.067 Identities = 44/51 (86%) Strand = Plus / Plus Query: 1 gaactaaaacacatctagatacattcatttctccaaaaagtatttctggac 51 ||||||||| |||||||||||||| |||| | || | ||||||||| |||| Sbjct: 780 gaactaaaatacatctagatacatccattcccccgacaagtatttccggac 830
>gb|AY235447.1| Triticum aestivum FCA-like protein (Fca-5H8) gene, exons 8 through 15, partial cds Length = 3524 Score = 46.1 bits (23), Expect = 0.067 Identities = 44/51 (86%) Strand = Plus / Plus Query: 1 gaactaaaacacatctagatacattcatttctccaaaaagtatttctggac 51 ||||||||| |||||||||||||| |||| | || | ||||||||| |||| Sbjct: 759 gaactaaaatacatctagatacatccattcccccgacaagtatttccggac 809
>dbj|AB081455.1| Oryzias latipes cnp-1 mRNA for C-type natriuretic peptide-1, complete cds Length = 1022 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 191 aaaacgtcaaaacatttctaca 212 |||||||||||||||||||||| Sbjct: 890 aaaacgtcaaaacatttctaca 869
>gb|AF548379.1| Aegilops tauschii isoamylase gene, complete cds Length = 9643 Score = 44.1 bits (22), Expect = 0.27 Identities = 31/34 (91%) Strand = Plus / Minus Query: 1 gaactaaaacacatctagatacattcatttctcc 34 ||||||||| || ||||||||||| ||||||||| Sbjct: 6032 gaactaaaatacgtctagatacatccatttctcc 5999
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1 gaactaaaacacatctagatacattcatt 29 ||||||||| |||||||||||||| |||| Sbjct: 52194 gaactaaaatacatctagatacatccatt 52222
>gb|AY235461.1| Triticum aestivum FCA-like protein (Fca-1B8) gene, exons 8 through 15, partial cds Length = 3631 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1 gaactaaaacacatctagatacattcatt 29 ||||||||| |||||||||||||| |||| Sbjct: 783 gaactaaaatacatctagatacatccatt 811
>emb|BX510301.6| Zebrafish DNA sequence from clone CH211-215A10 in linkage group 19, complete sequence Length = 209585 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 ttgttttcaatggcaaactat 84 ||||||||||||||||||||| Sbjct: 194935 ttgttttcaatggcaaactat 194955
>gb|AC105966.11| Mus musculus chromosome 3, clone RP23-403H2, complete sequence Length = 201376 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 acattgttttcaatggcaaa 80 |||||||||||||||||||| Sbjct: 197727 acattgttttcaatggcaaa 197708
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 40.1 bits (20), Expect = 4.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 1 gaactaaaacacatctagatacattcatttct 32 ||||||||| || ||||||||||| ||||||| Sbjct: 69855 gaactaaaatacgtctagatacatccatttct 69824
>gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, complete sequence Length = 142018 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 gaactaaaacacatctagatacat 24 ||||||||| |||||||||||||| Sbjct: 113474 gaactaaaatacatctagatacat 113497
>gb|AC004131.1|HUAC004131 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-69G12, complete sequence Length = 77713 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 atttctccaaaaagtatttc 46 |||||||||||||||||||| Sbjct: 11542 atttctccaaaaagtatttc 11523
>emb|AL080248.7|HSBA19D2 Human DNA sequence from clone RP11-19D2 on chromosome 20 Contains the a novel gene and the 5' end of a novel gene, complete sequence Length = 166913 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 cattcatttctccaaaaagt 41 |||||||||||||||||||| Sbjct: 49618 cattcatttctccaaaaagt 49599
>emb|AL360157.12| Human DNA sequence from clone RP11-801I18 on chromosome 6q14.2-16.1 Contains part of a novel gene, complete sequence Length = 197431 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 aaaaagtatttctggacaaa 54 |||||||||||||||||||| Sbjct: 60098 aaaaagtatttctggacaaa 60117
>gb|AY013754.1| Aegilops tauschii glutathione S-transferase gene, complete cds Length = 2453 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 gaactaaaacacatctagatacat 24 ||||||||| |||||||||||||| Sbjct: 1982 gaactaaaatacatctagatacat 2005
>gb|AC024248.7| Homo sapiens BAC clone RP11-659O3 from 4, complete sequence Length = 202340 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 agcaaaacataaatccacct 244 |||||||||||||||||||| Sbjct: 90693 agcaaaacataaatccacct 90674
>gb|AC011586.9| Homo sapiens, clone RP11-13N12, complete sequence Length = 167475 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 acattgttttcaatggcaaa 80 |||||||||||||||||||| Sbjct: 66973 acattgttttcaatggcaaa 66954
>gb|AC175781.3| Cavia porcellus clone CH234-402D11, complete sequence Length = 183894 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 tacattgttttcaatggcaa 79 |||||||||||||||||||| Sbjct: 31114 tacattgttttcaatggcaa 31133
>dbj|AK163846.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130079A18 product:unclassifiable, full insert sequence Length = 2319 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 acattgttttcaatggcaaa 80 |||||||||||||||||||| Sbjct: 606 acattgttttcaatggcaaa 587
>ref|XM_626968.1| Cryptosporidium parvum Iowa II secreted insulinase like peptidase (cgd3_4250), partial mRNA Length = 3597 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 atctagatacattcatttct 32 |||||||||||||||||||| Sbjct: 3191 atctagatacattcatttct 3210
>gb|AC027130.5|AC027130 Homo sapiens chromosome 16 clone CTD-2380F24, complete sequence Length = 134640 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 atttctccaaaaagtatttc 46 |||||||||||||||||||| Sbjct: 100262 atttctccaaaaagtatttc 100243
>gb|AC134300.3| Homo sapiens chromosome 16 clone CTC-496I23, complete sequence Length = 171048 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 atttctccaaaaagtatttc 46 |||||||||||||||||||| Sbjct: 101337 atttctccaaaaagtatttc 101356
>gb|AF459085.1| Hordeum vulgare SNF2P (Snf2P) gene, complete cds Length = 7963 Score = 40.1 bits (20), Expect = 4.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 1 gaactaaaacacatctagatacattcatttct 32 ||||||||| || ||||||||||| ||||||| Sbjct: 1807 gaactaaaatacgtctagatacatccatttct 1776
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome Length = 3031430 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 ttctccaaaaagtatttctg 48 |||||||||||||||||||| Sbjct: 1094226 ttctccaaaaagtatttctg 1094207
>dbj|BS000220.1| Pan troglodytes chromosome 22 clone:PTB-057K02, map 22, complete sequences Length = 150817 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 cattcatttctccaaaaagtattt 45 ||||||||| |||||||||||||| Sbjct: 133559 cattcatttatccaaaaagtattt 133536
>emb|BX001010.13| Mouse DNA sequence from clone RP23-18D18 on chromosome X, complete sequence Length = 227248 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 agatacattcatttctccaa 36 |||||||||||||||||||| Sbjct: 90485 agatacattcatttctccaa 90504
>dbj|AP004311.1| Synechocystis sp. PCC 6803 plasmid pSYSA DNA, complete genome Length = 103307 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 cattcatttctccaaaaagt 41 |||||||||||||||||||| Sbjct: 29741 cattcatttctccaaaaagt 29722
>gb|AC154698.2| Mus musculus BAC clone RP23-137A20 from 14, complete sequence Length = 197874 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 ttcatttctccaaaaagtat 43 |||||||||||||||||||| Sbjct: 186019 ttcatttctccaaaaagtat 186000
>emb|X04262.1|RNALDOG3 R.norvegicus gene encoding aldolase A, exons 4 & 5 Length = 363 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 attatgatcagacaggtttg 305 |||||||||||||||||||| Sbjct: 158 attatgatcagacaggtttg 139
>dbj|AP001700.1| Homo sapiens genomic DNA, chromosome 21q, section 44/105 Length = 340000 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 cattcatttctccaaaaagtattt 45 ||||||||| |||||||||||||| Sbjct: 159169 cattcatttatccaaaaagtattt 159146
>emb|AL954861.11| Zebrafish DNA sequence from clone CH211-8I17, complete sequence Length = 175026 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 gttctaaaacatgtgtagcaatat 126 |||||||||||| ||||||||||| Sbjct: 39194 gttctaaaacatttgtagcaatat 39171
>gb|L41869.1|BLYBGQ6 Hordeum vulgare L. beta-glucosidase (BGQ60) gene, complete cds Length = 4152 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 2 aactaaaacacatctagatacattcatt 29 |||||||| |||||||||||||| |||| Sbjct: 3073 aactaaaatacatctagatacatccatt 3046
>emb|AL773592.5| Mouse DNA sequence from clone RP23-336B11 on chromosome 4, complete sequence Length = 219956 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 agatacattcatttctccaa 36 |||||||||||||||||||| Sbjct: 213168 agatacattcatttctccaa 213149
>gb|AC102860.13| Mus musculus chromosome 3, clone RP24-511H12, complete sequence Length = 202315 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 acattgttttcaatggcaaa 80 |||||||||||||||||||| Sbjct: 908 acattgttttcaatggcaaa 889
>dbj|AP001608.1| Homo sapiens genomic DNA, chromosome 21, clone:KB1919E1, APP-D21S292 region, complete sequence Length = 158485 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 cattcatttctccaaaaagtattt 45 ||||||||| |||||||||||||| Sbjct: 64926 cattcatttatccaaaaagtattt 64903 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,249,197 Number of Sequences: 3902068 Number of extensions: 3249197 Number of successful extensions: 59854 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59775 Number of HSP's gapped (non-prelim): 79 length of query: 316 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 294 effective length of database: 17,147,199,772 effective search space: 5041276732968 effective search space used: 5041276732968 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
