ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast39e07 |
|---|---|
| Clone Library Name | barley_pub |
>AROC_SALCH (Q57LX0) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 361 Score = 31.6 bits (70), Expect = 0.89 Identities = 13/44 (29%), Positives = 25/44 (56%) Frame = +1 Query: 277 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 408 +G + +++ H+ L+P+ + +PG + A E VE +GRH Sbjct: 277 LGGISSGQHIVAHMALKPTSSITVPGRTINRAGEEVEMITKGRH 320
>AROC_YERPE (Q8ZD41) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 360 Score = 31.6 bits (70), Expect = 0.89 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +1 Query: 277 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 408 +G + + V H+ L+P+ + ++PG + E VE RGRH Sbjct: 276 LGGISSGQPVVAHIALKPTSSIMVPGQTINRQGEAVEMVTRGRH 319
>AROC_SALTY (P58729) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 360 Score = 31.6 bits (70), Expect = 0.89 Identities = 13/44 (29%), Positives = 25/44 (56%) Frame = +1 Query: 277 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 408 +G + +++ H+ L+P+ + +PG + A E VE +GRH Sbjct: 276 LGGISSGQHIVAHMALKPTSSITVPGRTINRAGEEVEMITKGRH 319
>VE2_BPV3 (Q8BDD6) Regulatory protein E2| Length = 414 Score = 31.2 bits (69), Expect = 1.2 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 8/54 (14%) Frame = +3 Query: 291 SPALCHGPPRA*TLRHCPAPRPPRAGSTRGC--------GASPPWPAHAGTATG 428 SP+ H PRA + RPP G RG G +PP P GT +G Sbjct: 259 SPSGSHSRPRAPHVPDQETGRPPGGGGRRGSRDQQQGPGGPAPPSPGEVGTRSG 312
>PFA4_NEUCR (Q7SCY6) Palmitoyltransferase PFA4 (EC 2.3.1.-) (Protein fatty| acyltransferase 4) Length = 486 Score = 31.2 bits (69), Expect = 1.2 Identities = 16/40 (40%), Positives = 19/40 (47%) Frame = +3 Query: 309 GPPRA*TLRHCPAPRPPRAGSTRGCGASPPWPAHAGTATG 428 GP +A + C AP+PPRA R C P H TG Sbjct: 97 GPQKAKWCKKCDAPKPPRAHHCRHCARCIPRMDHHCPWTG 136
>AROC_YERPS (Q668V5) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 361 Score = 30.8 bits (68), Expect = 1.5 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +1 Query: 277 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 408 +G + + V H+ L+P+ + ++PG + E VE RGRH Sbjct: 277 LGGISSGQPVVAHIALKPTSSIMVPGQTINRQGEAVEIVTRGRH 320
>AROC_PHOLL (Q7N299) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 361 Score = 30.8 bits (68), Expect = 1.5 Identities = 13/44 (29%), Positives = 24/44 (54%) Frame = +1 Query: 277 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 408 +G + + + H+ L+P+ + ++PG + E VE RGRH Sbjct: 277 LGGISSSQPIVAHIALKPTSSIMVPGKTINRQGEEVEMVTRGRH 320
>AROC_ERWCT (Q6D2M6) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 361 Score = 30.4 bits (67), Expect = 2.0 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = +1 Query: 277 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 408 +G + + + HL L+P+ + ++PG + E E RGRH Sbjct: 277 LGGISSGQNIVAHLALKPTSSIMVPGKTINRQGEATEMVTRGRH 320
>INSI1_CRIGR (Q8CFA6) Insulin-induced gene 1 protein (INSIG-1)| Length = 257 Score = 30.4 bits (67), Expect = 2.0 Identities = 14/18 (77%), Positives = 14/18 (77%) Frame = +3 Query: 342 PAPRPPRAGSTRGCGASP 395 PAPR PRAG T GCGA P Sbjct: 41 PAPRSPRAG-TAGCGARP 57
>5E5_RAT (Q63003) 5E5 antigen| Length = 825 Score = 30.0 bits (66), Expect = 2.6 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = -3 Query: 301 SAGEQGCRCARGRAPGAGELVGAEAQVHGQGGR-WAMDA 188 S GE G RGR GAGE + G+GGR W +A Sbjct: 292 SPGEWGADVPRGRGEGAGEWGSDVPKDRGEGGREWGPEA 330
>EVL_PONPY (Q5R896) Ena/VASP-like protein (Ena/vasodilator stimulated| phosphoprotein-like) Length = 422 Score = 30.0 bits (66), Expect = 2.6 Identities = 18/48 (37%), Positives = 19/48 (39%) Frame = +3 Query: 291 SPALCHGPPRA*TLRHCPAPRPPRAGSTRGCGASPPWPAHAGTATGLS 434 +P C GPP P P PP G PP P AG A G S Sbjct: 181 APVSCSGPP--------PPPPPPVPPPPTGATPPPPPPLPAGGAQGSS 220
>EVL_HUMAN (Q9UI08) Ena/VASP-like protein (Ena/vasodilator stimulated| phosphoprotein-like) Length = 416 Score = 30.0 bits (66), Expect = 2.6 Identities = 18/48 (37%), Positives = 19/48 (39%) Frame = +3 Query: 291 SPALCHGPPRA*TLRHCPAPRPPRAGSTRGCGASPPWPAHAGTATGLS 434 +P C GPP P P PP G PP P AG A G S Sbjct: 175 APVSCSGPP--------PPPPPPVPPPPTGATPPPPPPLPAGGAQGSS 214
>PHX2B_MOUSE (O35690) Paired mesoderm homeobox protein 2B (Paired-like homeobox| 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox) Length = 314 Score = 30.0 bits (66), Expect = 2.6 Identities = 38/126 (30%), Positives = 42/126 (33%), Gaps = 10/126 (7%) Frame = -3 Query: 430 NPVAVPACA--GHGGDAPQPRVLPXXXXXXXXXXXXXXXXXGP*HSAGEQG--------C 281 NP P+C G GG P P P GP GE G Sbjct: 201 NPNPTPSCGANGGGGGGPSPAGAP--------------GAAGPGGPGGEPGKGGAAAAAA 246 Query: 280 RCARGRAPGAGELVGAEAQVHGQGGRWAMDAPGLQAHLS*VTRIGHSLGGEWALM*FTAL 101 A A A G A G G WA PG +T I SLGG +A + L Sbjct: 247 AAAAAAAAAAAAAAGGLAAAGGPGQGWA-PGPGP------ITSIPDSLGGPFA----SVL 295 Query: 100 CSLPRP 83 SL RP Sbjct: 296 SSLQRP 301
>AROC_SALPA (Q5PCX2) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 361 Score = 29.6 bits (65), Expect = 3.4 Identities = 12/44 (27%), Positives = 24/44 (54%) Frame = +1 Query: 277 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 408 +G + +++ H+ L+P+ + +PG + E VE +GRH Sbjct: 277 LGGISSGQHIVAHMALKPTSSITVPGRTINRMGEEVEMITKGRH 320
>AROC_SALTI (P16280) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 360 Score = 29.6 bits (65), Expect = 3.4 Identities = 12/44 (27%), Positives = 24/44 (54%) Frame = +1 Query: 277 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 408 +G + +++ H+ L+P+ + +PG + E VE +GRH Sbjct: 276 LGGISSGQHIVAHMALKPTSSITVPGRTINRMGEEVEMITKGRH 319
>AROC_PSEAE (Q9I344) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 363 Score = 29.6 bits (65), Expect = 3.4 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = +1 Query: 277 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 408 +G + + + HL L+P+ + PG + A E V+ +GRH Sbjct: 276 LGGISSGQPIVAHLALKPTSSITTPGRSIDTAGEPVDMITKGRH 319
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 29.3 bits (64), Expect = 4.4 Identities = 16/52 (30%), Positives = 20/52 (38%) Frame = +2 Query: 200 PSPPLTMNLCFGTHQLAGTGCXXXXXXXPLFTSAMSRSTSSLNPPALPCSPA 355 P+PP T +H G PL T S + S PP P +PA Sbjct: 882 PTPPTTAGAAGFSHFHRALGGSLSSSDSPLLTPMQSAARSPQQPPPPPGAPA 933
>NUDEL_DROME (P98159) Serine protease nudel precursor (EC 3.4.21.-)| Length = 2616 Score = 29.3 bits (64), Expect = 4.4 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Frame = +1 Query: 277 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVAL---EVVERPHRGRHTQVRRPDC 432 IG L+ + +V VH E SG L H V V L + HR H Q+RR DC Sbjct: 2056 IGVLIDKHWVMVH-ESCLSGIDL-ETHYVSVLLGGGKTKRSAHRSNHEQIRRVDC 2108
>ADA19_MOUSE (O35674) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 19) (Meltrin beta) Length = 920 Score = 29.3 bits (64), Expect = 4.4 Identities = 30/94 (31%), Positives = 36/94 (38%), Gaps = 3/94 (3%) Frame = +2 Query: 80 PRSWQRAQRRESHQRPLSS**MADASNLT*MCLKSWSVHRPSPP---LTMNLCFGTHQLA 250 P + R +R+ES +RP S M A N CL S RP PP L N G Sbjct: 821 PEAGARIERKESARRPPPSRPMPPAPN----CLLSQDFSRPRPPQKALPANPVPGQRTGP 876 Query: 251 GTGCXXXXXXXPLFTSAMSRSTSSLNPPALPCSP 352 +G TS + TS PP P P Sbjct: 877 RSG----------GTSLLQPPTSGPQPPRPPAVP 900
>SASH1_MOUSE (P59808) SAM and SH3 domain-containing protein 1| Length = 1230 Score = 28.9 bits (63), Expect = 5.8 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 5/36 (13%) Frame = +3 Query: 339 CPAPRPPRAGS-----TRGCGASPPWPAHAGTATGL 431 CP+PR PR S + C PPW A +T L Sbjct: 1018 CPSPREPRPSSGTEPGSPACTRPPPWLAELPESTSL 1053
>THIC2_METTH (O27617) Probable thiamine biosynthesis protein thiC 2| Length = 424 Score = 28.9 bits (63), Expect = 5.8 Identities = 16/49 (32%), Positives = 23/49 (46%) Frame = -1 Query: 411 RVPATVGTLHNLECYLHGVAGEQGSAGGFKLEVDRDIALVNKGADALAD 265 R + G NL ++ G +LEVD+ +A V GADA+ D Sbjct: 47 RESSPCGIGENLSTKINANIGSSSKMEDIELEVDKALAAVEYGADAVMD 95
>UPPS_XANOR (Q5H1E5) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP| synthetase) (Di-trans,poly-cis-decaprenylcistransferase) (Undecaprenyl diphosphate synthase) (UDS) Length = 258 Score = 28.9 bits (63), Expect = 5.8 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -1 Query: 261 HPVPASWWVPKHKFMVKGGDGRW 193 HPVP VP+H ++ G+GRW Sbjct: 7 HPVPPVADVPRHIAIIMDGNGRW 29
>TRPC2_BOVIN (O62826) Short transient receptor potential channel 2 homolog| (TrpC2) (btrp2) Length = 432 Score = 28.5 bits (62), Expect = 7.6 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = -1 Query: 423 SPYLRVPATVGTLHNLECYLHGVAGEQGSAGG 328 +P L VPATVGT + E L G Q A G Sbjct: 365 TPELTVPATVGTQESSEIGLPDAGGAQAPASG 396
>WRK16_ARATH (Q9FL92) Probable WRKY transcription factor 16 (WRKY DNA-binding| protein 16) Length = 1372 Score = 28.5 bits (62), Expect = 7.6 Identities = 24/71 (33%), Positives = 31/71 (43%) Frame = +2 Query: 188 SVHRPSPPLTMNLCFGTHQLAGTGCXXXXXXXPLFTSAMSRSTSSLNPPALPCSPATPCR 367 S+ +P+ +NL L+G PL TS M STS NP L C C Sbjct: 677 SIVKPNYRELLNLLAEIPGLSGVSNLEQSDLKPL-TSLMKISTSYQNPGKLSCLELNDC- 734 Query: 368 *HSRLWSVPTV 400 SRL S+P + Sbjct: 735 --SRLRSLPNM 743
>PHX2B_HUMAN (Q99453) Paired mesoderm homeobox protein 2B (Paired-like homeobox| 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox) Length = 314 Score = 28.5 bits (62), Expect = 7.6 Identities = 37/126 (29%), Positives = 41/126 (32%), Gaps = 10/126 (7%) Frame = -3 Query: 430 NPVAVPACA--GHGGDAPQPRVLPXXXXXXXXXXXXXXXXXGP*HSAGEQG--------C 281 NP P+C G GG P P P GP GE G Sbjct: 201 NPNPTPSCGANGGGGGGPSPAGAP--------------GAAGPGGPGGEPGKGGAAAAAA 246 Query: 280 RCARGRAPGAGELVGAEAQVHGQGGRWAMDAPGLQAHLS*VTRIGHSLGGEWALM*FTAL 101 A A A G A G G WA PG +T I SLGG + + L Sbjct: 247 AAAAAAAAAAAAAAGGLAAAGGPGQGWA-PGPGP------ITSIPDSLGGPFG----SVL 295 Query: 100 CSLPRP 83 SL RP Sbjct: 296 SSLQRP 301
>GLMS_GLOVI (Q7NIG8) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 608 Score = 28.1 bits (61), Expect = 9.9 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = -1 Query: 438 ITTIRSPYLRVPATVGTLHNLECYLHGVAGEQGSAG 331 I T+ L + G LHNLE L+GVA G+ G Sbjct: 33 IATVGESGLELVRAKGKLHNLEEKLNGVAQSTGTVG 68 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,845,429 Number of Sequences: 219361 Number of extensions: 1427430 Number of successful extensions: 5233 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 4860 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5207 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
